October 2016 Commit Log

Number of Commits:
316
Number of Active Developers:
5
sbu062 2016-10-31 13:15 Rev.: 1880

small fix

15 lines of code changed in 1 file:

sbu062 2016-10-29 09:12 Rev.: 1879

generic is_maxval

30 lines of code changed in 1 file:

sbu062 2016-10-29 08:37 Rev.: 1878

minor formats

8 lines of code changed in 1 file:

sbu062 2016-10-29 08:24 Rev.: 1877

fix interpolation parameters

2 lines of code changed in 1 file:

sbu062 2016-10-29 08:17 Rev.: 1876

fix dimension

1 lines of code changed in 1 file:

sbu062 2016-10-29 08:16 Rev.: 1875

sigmoid interpolation parameters for spontaneous arousal dissipation

2 lines of code changed in 1 file:

sbu062 2016-10-28 19:44 Rev.: 1874

fixed arousal dissipation factor, deleted gamma

47 lines of code changed in 1 file:

sbu062 2016-10-28 16:00 Rev.: 1873

fix comments , nonparametric arousal dissipation function

46 lines of code changed in 1 file:

sbu062 2016-10-28 14:58 Rev.: 1872

fixed gos calculations + nonlinear gamma arousal dissipation function

66 lines of code changed in 1 file:

sbu062 2016-10-28 13:35 Rev.: 1871

initial implementation of arousal threshold-based GOS, with simple linear arousal dissipation function

170 lines of code changed in 1 file:

cje012 2016-10-28 09:49 Rev.: 1870

Debugging and added matrices for fitness, fitnessconsequences and strategy

1 lines of code changed in 1 file:

cje012 2016-10-28 09:48 Rev.: 1869

Added correct value to M_O2_exp

92 lines of code changed in 1 file:

nzlcj 2016-10-28 08:55 Rev.: 1868

Coded together. Added optimization. Made a suggestion for how THF affects survival through aerobic scope.

34 lines of code changed in 1 file:

sbu062 2016-10-27 21:28 Rev.: 1867

fix genome chart

94 lines of code changed in 2 files:

sbu062 2016-10-27 11:43 Rev.: 1866

added gos threshold, old disabled BODYMASS_MODULATION_HUNGER_GENOTYPE deleted

46 lines of code changed in 1 file:

sbu062 2016-10-27 10:49 Rev.: 1865

added gos_global and gos_arousal data components to gos basic type

9 lines of code changed in 1 file:

sbu062 2016-10-27 10:01 Rev.: 1864

minor fix, move func

3 lines of code changed in 1 file:

sbu062 2016-10-27 08:57 Rev.: 1863

updated makefile

11 lines of code changed in 1 file:

sbu062 2016-10-27 08:56 Rev.: 1862

added interpolation test/fix/tweak program

0 lines of code changed in 1 file:

sbu062 2016-10-27 08:25 Rev.: 1861

fix plotting / graphics library build options

7 lines of code changed in 1 file:

sbu062 2016-10-26 17:00 Rev.: 1860

added link option with graphic library, tested pgplot

5 lines of code changed in 1 file:

cje012 2016-10-26 14:10 Rev.: 1859

Added correct value to M_O2_exp

1 lines of code changed in 1 file:

cje012 2016-10-26 12:48 Rev.: 1858

Debugging.

15 lines of code changed in 1 file:

sbu062 2016-10-26 12:34 Rev.: 1857

only moved function

22 lines of code changed in 1 file:

sbu062 2016-10-26 12:27 Rev.: 1856

added gos arousal level to emotional memory stack

128 lines of code changed in 1 file:

nzlcj 2016-10-26 11:59 Rev.: 1855

Coded together. Struggled with conversions costs and THF effect on predation. Not finished.

29 lines of code changed in 1 file:

sbu062 2016-10-26 09:06 Rev.: 1854

NEVILLE_R4 deleted so far

0 lines of code changed in 1 file:

sbu062 2016-10-26 08:24 Rev.: 1853

fix nev. produces nans

24 lines of code changed in 1 file:

sbu062 2016-10-26 07:52 Rev.: 1852

added initial Neville polynominal

50 lines of code changed in 1 file:

cje012 2016-10-26 06:59 Rev.: 1851

Debugging.

31 lines of code changed in 1 file:

sbu062 2016-10-25 15:21 Rev.: 1850

divided difference polynominals interpolation routines, r4 r8 plus generic interface, ready

136 lines of code changed in 1 file:

sbu062 2016-10-25 14:55 Rev.: 1849

fix indents

117 lines of code changed in 1 file:

sbu062 2016-10-25 14:47 Rev.: 1848

fixed ddint, now real kind 4

62 lines of code changed in 1 file:

sbu062 2016-10-25 13:25 Rev.: 1847

added ddint (r8)

174 lines of code changed in 2 files:

sbu062 2016-10-25 12:24 Rev.: 1846

global private invalid constant

2 lines of code changed in 1 file:

sbu062 2016-10-25 10:35 Rev.: 1845

added global parameter code for INVALID

4 lines of code changed in 1 file:

sbu062 2016-10-25 09:24 Rev.: 1844

private vector ascends util, pending a vector wrappers with assumed shape arrays + generic interface

2 lines of code changed in 1 file:

sbu062 2016-10-25 09:03 Rev.: 1843

minor change comments

6 lines of code changed in 1 file:

glj042 2016-10-25 06:39

Scripts for plotting - Gabbi

1065 lines of code changed in 4 files:

glj042 2016-10-25 06:38 Rev.: 1838

0 lines of code changed in 2 files:

sbu062 2016-10-24 15:46 Rev.: 1837

set default real type in r4 interpolation procedures, added generic interfaces for vector-based wrapper functions

43 lines of code changed in 1 file:

sbu062 2016-10-24 14:57 Rev.: 1836

kind 8 real vector wrappers for lagrange and linear interpolators

64 lines of code changed in 1 file:

sbu062 2016-10-24 14:53 Rev.: 1835

vector based (1-d) wrappers for the linear and lagrange interpolators

73 lines of code changed in 1 file:

sbu062 2016-10-24 14:13 Rev.: 1834

minor fix function ascends strictly

10 lines of code changed in 1 file:

sbu062 2016-10-24 13:50 Rev.: 1833

marked disabled scalar parameter values in comments (by --)

7 lines of code changed in 1 file:

sbu062 2016-10-24 13:37 Rev.: 1832

minor

1 lines of code changed in 1 file:

sbu062 2016-10-24 13:36 Rev.: 1831

minor comments fixes and formatting, linear and lagrange interpolation procs ready now

0 lines of code changed in 1 file:

sbu062 2016-10-24 13:33 Rev.: 1830

implemented parameter correctness checks and generic interfaces

64 lines of code changed in 1 file:

sbu062 2016-10-24 13:11 Rev.: 1829

added real kind 8 interpolation procs

475 lines of code changed in 1 file:

sbu062 2016-10-24 12:59 Rev.: 1828

interpolation procs now ready for kind 8 reals, minor comments added

17 lines of code changed in 1 file:

sbu062 2016-10-24 12:40 Rev.: 1827

minor formats & comments

14 lines of code changed in 1 file:

sbu062 2016-10-24 12:35 Rev.: 1826

logical R8VEC_ASCENDS_STRICTLY modernised, uses result notation

12 lines of code changed in 1 file:

sbu062 2016-10-24 12:30 Rev.: 1825

interpolation main drivers now use assumed shape arrays for input

38 lines of code changed in 1 file:

sbu062 2016-10-24 11:56 Rev.: 1824

fix intent Lagrange interpolation

31 lines of code changed in 1 file:

sbu062 2016-10-24 11:45 Rev.: 1823

integer default type everywhere

19 lines of code changed in 1 file:

sbu062 2016-10-24 11:43 Rev.: 1822

initial implementation of Lagrange polynominal and linear interpolation in M dimensions, imported, R8 reals

531 lines of code changed in 2 files:

sbu062 2016-10-22 16:15 Rev.: 1821

fix class chart, abstract type

48 lines of code changed in 2 files:

sbu062 2016-10-22 16:11 Rev.: 1820

fix import

1 lines of code changed in 1 file:

sbu062 2016-10-22 16:03 Rev.: 1819

updated class chart with the new base root type for motivation

576 lines of code changed in 2 files:

sbu062 2016-10-22 15:32 Rev.: 1818

the base motivation type class STATE_MOTIVATION_BASE converted to abstract type, abstract interface to the clean_init function added.

18 lines of code changed in 1 file:

sbu062 2016-10-22 14:59 Rev.: 1817

all motivation objects are now extensions of the base root motivation type, fix comments and deleted TODO

10 lines of code changed in 1 file:

sbu062 2016-10-22 14:46 Rev.: 1816

converted all motivations as extensions of the base root motivation type, deleted specific motivation accessor functions

12 lines of code changed in 1 file:

sbu062 2016-10-22 14:31 Rev.: 1815

converted hunger motivation to a small-code extension of the base root motivation type, TODO: do all other motivations the same

42 lines of code changed in 1 file:

sbu062 2016-10-22 14:17 Rev.: 1814

added base motivation container class as a root to all other motivation types (which would be extensions)

298 lines of code changed in 1 file:

sbu062 2016-10-22 10:20 Rev.: 1813

minor add comment todo -- delete code doubling in emotional states + abstract base class motivation

3 lines of code changed in 1 file:

sbu062 2016-10-21 20:43 Rev.: 1812

further minor fix

1 lines of code changed in 1 file:

sbu062 2016-10-21 20:42 Rev.: 1811

update revision string

6 lines of code changed in 1 file:

sbu062 2016-10-21 20:32 Rev.: 1810

added revision string

3 lines of code changed in 1 file:

sbu062 2016-10-21 15:43 Rev.: 1809

minor changes in comments

10 lines of code changed in 1 file:

sbu062 2016-10-21 14:19 Rev.: 1808

predation risk assessment for appraisal now weights only a part of the latest perceptual memory

58 lines of code changed in 1 file:

sbu062 2016-10-21 13:05 Rev.: 1807

emotional memory functions elemental

2 lines of code changed in 1 file:

sbu062 2016-10-21 13:02 Rev.: 1806

motivation funcs elemental

3 lines of code changed in 1 file:

sbu062 2016-10-21 12:22 Rev.: 1805

spatial_neighbours_distances cannot be pure (comment)

1 lines of code changed in 1 file:

sbu062 2016-10-21 12:08 Rev.: 1804

spatial distance 3d made pure function

2 lines of code changed in 1 file:

sbu062 2016-10-21 11:58 Rev.: 1803

accessor functions for perception objects all made elemental, fixed add_to_memory -- renamed perception_to_memory and motivations_to_memory to avoid incorrect overriding

22 lines of code changed in 1 file:

sbu062 2016-10-21 11:27 Rev.: 1802

reproduction state accessor get funcs now elemental

13 lines of code changed in 1 file:

sbu062 2016-10-21 11:21 Rev.: 1801

active avoidance state accessor get funcs now elemental

13 lines of code changed in 1 file:

sbu062 2016-10-21 11:19 Rev.: 1800

passive avoidance state accessor get funcs now elemental

13 lines of code changed in 1 file:

sbu062 2016-10-21 11:17 Rev.: 1799

hunger state accessor get funcs now elemental

13 lines of code changed in 1 file:

sbu062 2016-10-21 11:13 Rev.: 1798

accessor functions for motivational state label

71 lines of code changed in 1 file:

sbu062 2016-10-21 10:27 Rev.: 1797

coding rules from bigDFT project as a hidden comment (so far)

5 lines of code changed in 1 file:

sbu062 2016-10-21 09:50 Rev.: 1796

get label function for hunger motivation state

14 lines of code changed in 1 file:

nzlcj 2016-10-21 09:44 Rev.: 1795

Coded together. Added mortality and more complete reserve dynamics.

53 lines of code changed in 1 file:

sbu062 2016-10-21 09:43 Rev.: 1794

added gos get-label function

12 lines of code changed in 1 file:

sbu062 2016-10-21 08:47 Rev.: 1793

merged from branch

2878 lines of code changed in 5 files:

sbu062 2016-10-21 08:45 Rev.: 1792

minor fix interpolation doc

9 lines of code changed in 1 file:

sbu062 2016-10-20 18:20 Rev.: 1791

minor fix another

5 lines of code changed in 1 file:

sbu062 2016-10-20 18:17 Rev.: 1790

minor fix

5 lines of code changed in 1 file:

sbu062 2016-10-20 18:13 Rev.: 1789

fix doc

2 lines of code changed in 1 file:

sbu062 2016-10-20 18:10 Rev.: 1788

update doc, linear interpolation func.

28 lines of code changed in 1 file:

sbu062 2016-10-20 16:31 Rev.: 1787

minor fix linear interpolation function , real kind 8 version plus generic interface

87 lines of code changed in 1 file:

sbu062 2016-10-20 16:22 Rev.: 1786

updated linear interpolation function, single precision real 4

53 lines of code changed in 1 file:

sbu062 2016-10-20 15:45 Rev.: 1785

linear interpolation function

49 lines of code changed in 2 files:

nzlcj 2016-10-20 12:44 Rev.: 1784

Coded together - one line with intake after long discussions.

10 lines of code changed in 1 file:

sbu062 2016-10-20 12:26 Rev.: 1783

emotional memory procs are now pure, added proc to add gos to emotional memory

16 lines of code changed in 1 file:

sbu062 2016-10-20 10:27 Rev.: 1782

emotional memory stack object now includes gos

10 lines of code changed in 1 file:

sbu062 2016-10-20 10:20 Rev.: 1781

character string add_to_history component

29 lines of code changed in 1 file:

sbu062 2016-10-20 10:03 Rev.: 1780

prototype of a "headless" architecture for gos

19 lines of code changed in 1 file:

sbu062 2016-10-20 09:44 Rev.: 1779

minor change, mostly comments

6 lines of code changed in 1 file:

sbu062 2016-10-20 09:37 Rev.: 1778

prototype gos procedures

22 lines of code changed in 1 file:

sbu062 2016-10-20 08:35 Rev.: 1777

labels for motivation components, added prototype gos procedure

20 lines of code changed in 1 file:

sbu062 2016-10-20 08:20 Rev.: 1776

neuro_resp is now the primary outer interface name of trait_init

2 lines of code changed in 1 file:

sbu062 2016-10-20 08:17 Rev.: 1775

rename trait_init_genotype only. might need for rescale- genotype init function.

3 lines of code changed in 1 file:

sbu062 2016-10-20 08:12 Rev.: 1774

fix comment todo done

3 lines of code changed in 1 file:

sbu062 2016-10-20 08:10 Rev.: 1773

minor, comments

4 lines of code changed in 1 file:

sbu062 2016-10-20 07:54 Rev.: 1772

rename `trait_init` to `neuro_resp` in appraisal. in case trait init is used differently, e.g. direct init from genome

45 lines of code changed in 1 file:

cje012 2016-10-20 07:47 Rev.: 1771

Debugging.

3 lines of code changed in 1 file:

sbu062 2016-10-20 07:41 Rev.: 1770

renamed generic interface to neuronal response (same length), in case we need a direct-genome trait init

2 lines of code changed in 1 file:

cje012 2016-10-19 14:58

Debugging.

9 lines of code changed in 2 files:

sbu062 2016-10-19 14:45 Rev.: 1767

gos dominance in all motivational state sub-objects, +init func, +is_dominant

61 lines of code changed in 1 file:

cje012 2016-10-19 14:42 Rev.: 1766

Added comments, updated all names to the same standard and declared some variables.

63 lines of code changed in 1 file:

sbu062 2016-10-19 14:30 Rev.: 1765

state hunger gos indicator + function

24 lines of code changed in 1 file:

sbu062 2016-10-19 13:39 Rev.: 1764

init appraisal procedure

17 lines of code changed in 1 file:

sbu062 2016-10-19 13:31 Rev.: 1763

initialisation and cleanup procedures for all emotional state sub-objects

88 lines of code changed in 1 file:

sbu062 2016-10-19 13:17 Rev.: 1762

add to emotional memory procedure, for all motivations

17 lines of code changed in 1 file:

sbu062 2016-10-19 12:39 Rev.: 1761

updated class charts

52 lines of code changed in 2 files:

sbu062 2016-10-19 12:33 Rev.: 1760

perceptual memory retrieval mean value, implemented optional arbitrary memory window, plus fix array bounds in all average memory retrieval procs

57 lines of code changed in 1 file:

sbu062 2016-10-19 12:19 Rev.: 1759

emotional memory retrieval functions

131 lines of code changed in 1 file:

sbu062 2016-10-19 12:11 Rev.: 1758

emotional memory retrieval function for hunger

45 lines of code changed in 1 file:

sbu062 2016-10-19 11:48 Rev.: 1757

emotional memory stack object and main functions (no get-values yet)

94 lines of code changed in 1 file:

sbu062 2016-10-19 11:13 Rev.: 1756

svn ignore properties

6 lines of code changed in 2 files:

sbu062 2016-10-19 11:09 Rev.: 1755

female genetic modulation of reproductive drive, plus is_female function in the genome

95 lines of code changed in 1 file:

sbu062 2016-10-19 10:48 Rev.: 1754

no modulation procedure for init, plus explicit modulation procedure prototype (so far male sex modulation of reproductive drive)

35 lines of code changed in 1 file:

sbu062 2016-10-19 09:44 Rev.: 1753

formatting only, minor

14 lines of code changed in 1 file:

sbu062 2016-10-19 09:39 Rev.: 1752

added primary motivation value (%motivation_prim) and final motivation (%motivation_finl) values, good to save before and after modulation for debugging and data analysis

91 lines of code changed in 1 file:

nzlcj 2016-10-19 09:39 Rev.: 1751

Coded together. Coded effects of length, reserves, thyroid, IGF.

57 lines of code changed in 1 file:

sbu062 2016-10-18 14:33 Rev.: 1750

prototype sex/male modulation of reproductive motivation by asymptotic additive component

160 lines of code changed in 1 file:

sbu062 2016-10-18 11:30 Rev.: 1749

update scheme, small change

3 lines of code changed in 2 files:

sbu062 2016-10-18 11:27 Rev.: 1748

updated class charts, unitary motivation objects with both perception components and overall drive level

100 lines of code changed in 2 files:

sbu062 2016-10-18 11:09 Rev.: 1747

minor, modulation prototype (all components), modulation identical so far

1 lines of code changed in 1 file:

sbu062 2016-10-18 11:07 Rev.: 1746

minor, comments only

6 lines of code changed in 1 file:

sbu062 2016-10-18 11:02 Rev.: 1745

standard get-functions for the motivation states (pluggable objects)

35 lines of code changed in 1 file:

sbu062 2016-10-18 10:53 Rev.: 1744

global motivation value moved to STATE_, so makes now unitary pluggable emotion/motivation objects

62 lines of code changed in 1 file:

sbu062 2016-10-18 09:46 Rev.: 1743

comments only

7 lines of code changed in 1 file:

sbu062 2016-10-18 09:44 Rev.: 1742

separate motivation object, plugged now into motivation_state agent level

27 lines of code changed in 1 file:

cje012 2016-10-18 09:41 Rev.: 1741

Updated all variable names to the same standard

1 lines of code changed in 1 file:

cje012 2016-10-18 09:36 Rev.: 1740

Updated

12 lines of code changed in 1 file:

cje012 2016-10-18 09:31 Rev.: 1739

Updates

5 lines of code changed in 1 file:

nzlcj 2016-10-18 09:19 Rev.: 1738

Loop structures written out.

41 lines of code changed in 1 file:

nzlcj 2016-10-18 07:25 Rev.: 1737

First upload of second attempt at hormones optimization model.

6 lines of code changed in 1 file:

glj042 2016-10-17 17:24 Rev.: 1734

Add new script

0 lines of code changed in 1 file:

glj042 2016-10-17 17:18 Rev.: 1733

Add new script

0 lines of code changed in 1 file:

glj042 2016-10-17 17:13 Rev.: 1732

0 lines of code changed in 2 files:

sbu062 2016-10-17 14:57 Rev.: 1731

prototype procedure modulation, no genotype effects so far

15 lines of code changed in 1 file:

sbu062 2016-10-17 13:48 Rev.: 1730

added appraisal and motivation chart

1 lines of code changed in 1 file:

sbu062 2016-10-17 13:47 Rev.: 1729

added appraisal and motivation class charts

2692 lines of code changed in 2 files:

sbu062 2016-10-17 12:51 Rev.: 1728

minor, reformat only

30 lines of code changed in 1 file:

sbu062 2016-10-17 12:47 Rev.: 1727

reproduction state added to perception and motivation, genotype x phenotype matrices, appraisal and motivation functions IMPLEMENTED ALL

602 lines of code changed in 1 file:

sbu062 2016-10-17 11:47 Rev.: 1726

reformatted genotype x phenotype matrices, after adding reproduction state

779 lines of code changed in 1 file:

sbu062 2016-10-17 11:13 Rev.: 1725

additional chromosome for reproduction, updated genotype x phenotype parameter matrices.

595 lines of code changed in 1 file:

sbu062 2016-10-17 10:50 Rev.: 1724

adding state "reproduction": added motivational state

185 lines of code changed in 1 file:

sbu062 2016-10-17 10:33 Rev.: 1723

use floor instead of int for RAND_I, avoids local elevation of density function in negative arguments.

6 lines of code changed in 1 file:

glj042 2016-10-17 09:06 Rev.: 1722

Script for plotting

0 lines of code changed in 1 file:

glj042 2016-10-17 09:05 Rev.: 1721

Script generates data for plotting

0 lines of code changed in 1 file:

sbu062 2016-10-15 07:21 Rev.: 1719

implemented primary motivation components and summator function, old modulation object prototype deleted, modulation will be implemented within motivation object

84 lines of code changed in 1 file:

sbu062 2016-10-14 13:28 Rev.: 1718

prototype modulation functions, all hunger state components

99 lines of code changed in 1 file:

sbu062 2016-10-14 12:58 Rev.: 1717

prototype modulation function for state object

19 lines of code changed in 1 file:

sbu062 2016-10-14 12:01 Rev.: 1716

modulation-level component

13 lines of code changed in 1 file:

sbu062 2016-10-14 11:08 Rev.: 1715

rename external interface for gaussian3d

1 lines of code changed in 1 file:

sbu062 2016-10-14 11:02 Rev.: 1714

debug code disable

16 lines of code changed in 1 file:

sbu062 2016-10-14 11:00 Rev.: 1713

fix gaussian object scatter, non-conforming parameters

7 lines of code changed in 1 file:

sbu062 2016-10-14 10:11 Rev.: 1712

fix depth in function, debug code

25 lines of code changed in 1 file:

sbu062 2016-10-14 09:41 Rev.: 1711

Gaussian 2d placement with stochastic separate depth added, plus made type-bound

49 lines of code changed in 1 file:

sbu062 2016-10-14 08:35 Rev.: 1710

Gaussian random spatial pbjects in 2d (fixed depth)

160 lines of code changed in 1 file:

sbu062 2016-10-14 06:17 Rev.: 1709

class-safe centroid for Gaussian random spatial objects array

4 lines of code changed in 1 file:

sbu062 2016-10-14 06:00 Rev.: 1708

array of Gaussian random spatial objects bound to an environment, single centroid

73 lines of code changed in 1 file:

sbu062 2016-10-14 03:44 Rev.: 1707

minor, conversion

3 lines of code changed in 1 file:

sbu062 2016-10-13 14:37 Rev.: 1706

added appraisal class scheme, now copy of percept

0 lines of code changed in 1 file:

sbu062 2016-10-13 14:29 Rev.: 1705

active avoidance appraisal functions, with genotype x phenotype constants :: NOTE: previous commit did passive avoidance

561 lines of code changed in 1 file:

sbu062 2016-10-13 13:58 Rev.: 1704

active avoidance appraisal functions, with genotype x penotype parameters

588 lines of code changed in 1 file:

sbu062 2016-10-13 12:40 Rev.: 1703

minor comments fix only

5 lines of code changed in 1 file:

sbu062 2016-10-13 12:39 Rev.: 1702

added two types of food neural components: directly seen and from the past memory stack

42 lines of code changed in 1 file:

sbu062 2016-10-13 12:29 Rev.: 1701

renamed fear to active avoidance

44 lines of code changed in 1 file:

sbu062 2016-10-13 11:58 Rev.: 1700

renamed stress to passive avoidance

89 lines of code changed in 1 file:

sbu062 2016-10-13 11:39 Rev.: 1699

neuronal response for age perception on hunger

56 lines of code changed in 1 file:

sbu062 2016-10-13 11:27 Rev.: 1698

neural response energy reserves on hunger

50 lines of code changed in 1 file:

sbu062 2016-10-13 11:20 Rev.: 1697

neuronal response for body mass / hunger

50 lines of code changed in 1 file:

sbu062 2016-10-13 11:14 Rev.: 1696

neuronal response for stomach availability + genotype matrix for food in memory stack

131 lines of code changed in 1 file:

sbu062 2016-10-13 10:41 Rev.: 1695

for hunger state, two food components: food_dir directly seen and food_mem from the past memory

30 lines of code changed in 1 file:

sbu062 2016-10-12 15:22 Rev.: 1694

added get average foods for memory stack into type-bound

1 lines of code changed in 1 file:

sbu062 2016-10-12 15:19 Rev.: 1693

perceptual memory functions for food items: get total and get mean

32 lines of code changed in 1 file:

sbu062 2016-10-12 15:02 Rev.: 1692

refactor average predator count function making use the func. average, average components declared pure

3 lines of code changed in 1 file:

sbu062 2016-10-12 14:56 Rev.: 1691

refactor array average excluding missing code function using fast parallel array intrinsics

22 lines of code changed in 1 file:

sbu062 2016-10-12 14:38 Rev.: 1690

perception memory for predators - get average count, implement neuronal response for predator risk making use of weighted memory for risk

41 lines of code changed in 1 file:

sbu062 2016-10-12 14:02 Rev.: 1689

total number of predators in perception memory stack, elemental function

13 lines of code changed in 1 file:

sbu062 2016-10-12 13:29 Rev.: 1688

neuronal responses for depth, food count, conspecifics + prototype for predators

256 lines of code changed in 1 file:

sbu062 2016-10-12 12:16 Rev.: 1687

hunger light Gaussian perception error parameter

14 lines of code changed in 1 file:

sbu062 2016-10-12 12:09 Rev.: 1686

neuronal function -- use trait_init -- for hunger light

19 lines of code changed in 1 file:

sbu062 2016-10-12 11:34 Rev.: 1685

state fear get functions

132 lines of code changed in 1 file:

sbu062 2016-10-12 11:28 Rev.: 1684

state stress get functions

137 lines of code changed in 1 file:

sbu062 2016-10-12 11:22 Rev.: 1683

state hunger get functions

139 lines of code changed in 1 file:

sbu062 2016-10-12 09:07 Rev.: 1682

shift neural function from state sub-object to the individual hierarchy for neuronal function

6 lines of code changed in 1 file:

sbu062 2016-10-12 08:42 Rev.: 1681

beautify genotype x phenotype matrices (pad for pad with was not obvious) + genotype neuronal response light hunger

55 lines of code changed in 1 file:

sbu062 2016-10-12 07:12 Rev.: 1680

state hunger prototype (no gamma2gene so far) + beautify comments

83 lines of code changed in 1 file:

sbu062 2016-10-11 15:29 Rev.: 1679

neurobiological states prototypes

52 lines of code changed in 1 file:

sbu062 2016-10-11 13:19 Rev.: 1678

appraisal prototype

11 lines of code changed in 1 file:

sbu062 2016-10-11 12:06 Rev.: 1677

small fix

1 lines of code changed in 1 file:

sbu062 2016-10-11 12:02 Rev.: 1676

inin perceptions, inner perceptions wrapper + examples/templates for outer perceptions in comments

65 lines of code changed in 1 file:

sbu062 2016-10-11 10:07 Rev.: 1675

debug code, workaround against intel ifort compiler bug with OO output

58 lines of code changed in 1 file:

sbu062 2016-10-11 09:02 Rev.: 1674

minor edit

2 lines of code changed in 1 file:

sbu062 2016-10-11 09:00 Rev.: 1673

random uniform objects in 2D with fixed depth, generic interface remains the same (uniform)

62 lines of code changed in 1 file:

sbu062 2016-10-11 06:55 Rev.: 1672

comment only fix, all perception objects are now embedded back to the agent PERCEPTION data structure, rather than output for debug, debug code disabled all

4 lines of code changed in 1 file:

glj042 2016-10-11 06:54 Rev.: 1671

Nothing important - Gabbi

139 lines of code changed in 1 file:

sbu062 2016-10-11 06:43 Rev.: 1670

all (stomach, bodymass, energy, age) perceptions - now embedded within-agent PERCEPTION, debug code disabled previously

18 lines of code changed in 1 file:

sbu062 2016-10-11 06:31 Rev.: 1669

predator perception - now embedded within-agent PERCEPTION

4 lines of code changed in 1 file:

sbu062 2016-10-11 06:29 Rev.: 1668

conspecifics perception - now embedded within-agent PERCEPTION

4 lines of code changed in 1 file:

sbu062 2016-10-11 06:26 Rev.: 1667

depth and food perception - now embedded within-agent PERCEPTION

42 lines of code changed in 1 file:

sbu062 2016-10-11 06:16 Rev.: 1666

light perception - now embedded within-agent PERCEPTION, have to do the same with the other perceptions

4 lines of code changed in 1 file:

sbu062 2016-10-11 05:57 Rev.: 1665

fix permute_random, ,erge from branch

3 lines of code changed in 1 file:

sbu062 2016-10-11 05:55 Rev.: 1664

fix permute_random outside module

3 lines of code changed in 1 file:

sbu062 2016-10-11 05:45 Rev.: 1663

merged random permutation function

4066 lines of code changed in 4 files:

sbu062 2016-10-11 05:42 Rev.: 1662

integer random permutation function

49 lines of code changed in 2 files:

sbu062 2016-10-11 04:32 Rev.: 1661

minor, comment floor versus int

1 lines of code changed in 1 file:

sbu062 2016-10-10 20:14 Rev.: 1660

minor comment

1 lines of code changed in 1 file:

sbu062 2016-10-10 20:08 Rev.: 1659

age perception object + procs

81 lines of code changed in 1 file:

sbu062 2016-10-10 20:07 Rev.: 1658

updated class chart, delete age from memory

113 lines of code changed in 2 files:

sbu062 2016-10-10 17:32 Rev.: 1657

updated class chart

3912 lines of code changed in 2 files:

sbu062 2016-10-10 15:26 Rev.: 1656

added perceptual memory stack object and procedures

55 lines of code changed in 1 file:

sbu062 2016-10-10 14:52 Rev.: 1655

rename class only

5 lines of code changed in 1 file:

sbu062 2016-10-10 14:48 Rev.: 1654

added percepual memory stack object (of arrays)

74 lines of code changed in 1 file:

sbu062 2016-10-10 14:03 Rev.: 1653

added comment on whole-array allocatable derived type component passage to dummy params, f2003 6.1.2

11 lines of code changed in 1 file:

sbu062 2016-10-10 13:52 Rev.: 1652

reverted fully allocatable perception objects, problems with pure/elemental procedures (allocatable forbidden!!!) and f2003 standard 6.1.2. prohibits allocatable components passage from derived types as they are kept separately from the type [Error: Component to the right of a part reference with nonzero rank must not have the ALLOCATABLE attribute at ...]... may consider parametrizing arrays within derived types but does not work for scalars.

4 lines of code changed in 1 file:

sbu062 2016-10-10 12:29 Rev.: 1651

food perception object fully allocatable

5 lines of code changed in 1 file:

sbu062 2016-10-10 12:04 Rev.: 1650

comments and reformat

43 lines of code changed in 1 file:

sbu062 2016-10-10 11:05 Rev.: 1649

energy perception object in the individual PERCEPTION layer

30 lines of code changed in 1 file:

sbu062 2016-10-10 10:59 Rev.: 1648

body mass perception object in the individual PERCEPTION layer

22 lines of code changed in 1 file:

sbu062 2016-10-10 10:53 Rev.: 1647

stomach perception object in the individual PERCEPTION layer

58 lines of code changed in 1 file:

judyjinn 2016-10-07 19:19 Rev.: 1646

commit before converting all cog/forage genes into a single genomeCOG and genomeFOR array

254 lines of code changed in 2 files:

sbu062 2016-10-07 13:14 Rev.: 1645

merged latest, class chart for perception

6870 lines of code changed in 5 files:

sbu062 2016-10-07 13:09 Rev.: 1644

modify class chart, perception

694 lines of code changed in 2 files:

nzlcj 2016-10-07 13:04 Rev.: 1643

Looked for errors together. Added 2* migration cost in backweards routine, hopefully it works now.

4 lines of code changed in 1 file:

sbu062 2016-10-07 12:59 Rev.: 1642

minor fix

5 lines of code changed in 1 file:

sbu062 2016-10-07 12:40 Rev.: 1641

procs light and depth in the whole perception type

43 lines of code changed in 1 file:

sbu062 2016-10-07 12:16 Rev.: 1640

perception depth

63 lines of code changed in 1 file:

sbu062 2016-10-07 11:58 Rev.: 1639

perception light

70 lines of code changed in 1 file:

sbu062 2016-10-07 10:53 Rev.: 1638

small fix, added predator perception func to the type def

3 lines of code changed in 1 file:

sbu062 2016-10-07 07:37 Rev.: 1637

intel-ifort-safe debug output using log_dbg, plus minor comment fix on now_v

14 lines of code changed in 1 file:

sbu062 2016-10-07 07:04 Rev.: 1636

still intel *catastrophic* compiler bug, had to use do-loops instead of elemental functions or even whole-array colon assignments

34 lines of code changed in 1 file:

sbu062 2016-10-07 05:54 Rev.: 1635

intel compiler bug report formatted, fit line

12 lines of code changed in 1 file:

sbu062 2016-10-07 05:10 Rev.: 1634

added another intel compiler bug report, unformatted

12 lines of code changed in 1 file:

sbu062 2016-10-06 18:59 Rev.: 1633

predator perception objects

418 lines of code changed in 1 file:

sbu062 2016-10-06 14:21 Rev.: 1632

update the individual

113 lines of code changed in 2 files:

sbu062 2016-10-06 14:16 Rev.: 1631

update the individual

986 lines of code changed in 2 files:

sbu062 2016-10-06 14:05 Rev.: 1630

update perception object scheme

1030 lines of code changed in 2 files:

sbu062 2016-10-06 11:07 Rev.: 1629

forgotten conversion from m to cm in visual range result

7 lines of code changed in 1 file:

sbu062 2016-10-06 10:57 Rev.: 1628

forgotten m2cm functions

35 lines of code changed in 1 file:

sbu062 2016-10-06 10:37 Rev.: 1627

added more text on perception

15 lines of code changed in 1 file:

sbu062 2016-10-06 10:11 Rev.: 1626

fixed perception scheme

1181 lines of code changed in 3 files:

sbu062 2016-10-06 10:01 Rev.: 1625

added perception diagrams to doc

18 lines of code changed in 1 file:

sbu062 2016-10-06 09:50 Rev.: 1624

added perception objects diagram to img doc

5532 lines of code changed in 2 files:

sbu062 2016-10-06 08:20 Rev.: 1623

moved internal perception objects below spatial/environmental, they are separate

54 lines of code changed in 1 file:

sbu062 2016-10-06 08:00 Rev.: 1622

striped history stacks from perception objects/components, they will be placed in whole-agent perception layer, components will be truly dynamic and allocatable

16 lines of code changed in 1 file:

sbu062 2016-10-05 17:37 Rev.: 1621

fixed regression in food perception subroutine, dist_food copy., plus fixed index as in conspecifics proc

38 lines of code changed in 1 file:

sbu062 2016-10-05 16:25 Rev.: 1620

fixed wrong index from self in conspecific perception proc.

16 lines of code changed in 1 file:

sbu062 2016-10-05 15:56 Rev.: 1619

debugged and fixed conspecific perception procedure (perception object build was wrong by bad indexing)

3 lines of code changed in 1 file:

sbu062 2016-10-05 11:50 Rev.: 1618

debug code for percept conspecifics

82 lines of code changed in 1 file:

sbu062 2016-10-05 10:22 Rev.: 1617

min_dist_self tolerance parameter in perception conspecifics

16 lines of code changed in 1 file:

sbu062 2016-10-05 10:03 Rev.: 1616

minor fix, deleted food-coment tags in conspecifics perception proc

12 lines of code changed in 1 file:

sbu062 2016-10-05 09:47 Rev.: 1615

minor fix comment

3 lines of code changed in 1 file:

sbu062 2016-10-05 09:44 Rev.: 1614

copy food items array component in food perception proc now class-safe position( location() ) pattern

2 lines of code changed in 1 file:

sbu062 2016-10-05 09:29 Rev.: 1613

stochastic daylight parameter added + fix perception procs

12 lines of code changed in 1 file:

sbu062 2016-10-05 09:16 Rev.: 1612

environment forgotten timestep get+set procs, plus %dpos() func instead of direct depth value in both food and conspecificperception procs

38 lines of code changed in 1 file:

sbu062 2016-10-05 08:00 Rev.: 1611

minor changes and renames parameter

38 lines of code changed in 1 file:

sbu062 2016-10-05 07:08 Rev.: 1610

checked if copying all conspecifics into the additional array of spatial objects `agents_near` is needed. YES. resulted in internal compiler bug, reported in comments

24 lines of code changed in 1 file:

sbu062 2016-10-05 06:40 Rev.: 1609

minor changes in conspecific perception before further refactoring

6 lines of code changed in 1 file:

sbu062 2016-10-04 20:26 Rev.: 1608

fix conspecific perception function, builds now

7 lines of code changed in 1 file:

sbu062 2016-10-04 20:06 Rev.: 1607

conspecific perception function is nearly ready

124 lines of code changed in 1 file:

sbu062 2016-10-04 14:20 Rev.: 1606

reorder, plus work on converting consp_perception_get_visrange_objects: NOT READY TO BUILD YET

210 lines of code changed in 1 file:

glj042 2016-10-04 14:00 Rev.: 1605

Comments - Gabbi

138 lines of code changed in 1 file:

sbu062 2016-10-04 12:32 Rev.: 1604

refactor perception: now separate spatial perception component with higher order conspecific predators etc sub-components

287 lines of code changed in 1 file:

sbu062 2016-10-04 09:58 Rev.: 1603

done make and destroy procs for conspecific perception object

17 lines of code changed in 1 file:

sbu062 2016-10-04 09:46 Rev.: 1602

proto make for conspecific perception object

14 lines of code changed in 1 file:

sbu062 2016-10-04 09:35 Rev.: 1601

connspecifics perception object create + init

43 lines of code changed in 1 file:

sbu062 2016-10-04 09:13 Rev.: 1600

reorder sonspecific perception component, + proto create for consp perception object

19 lines of code changed in 1 file:

sbu062 2016-10-03 21:53 Rev.: 1599

get_dist for conspecific perception component

12 lines of code changed in 1 file:

sbu062 2016-10-03 21:49 Rev.: 1598

moved distance to the conspecific(s) into conspecific perception component

15 lines of code changed in 1 file:

sbu062 2016-10-03 13:25 Rev.: 1597

conspecific percept. component, get_size

12 lines of code changed in 1 file:

sbu062 2016-10-03 13:00 Rev.: 1596

function length to surface area for fish, for conspecific perception

17 lines of code changed in 1 file:

sbu062 2016-10-03 12:11 Rev.: 1595

only parameters

6 lines of code changed in 1 file:

sbu062 2016-10-03 11:33 Rev.: 1594

fix body length init, plus conspecific perception body size minimum

15 lines of code changed in 1 file:

sbu062 2016-10-03 11:19 Rev.: 1593

conspecific perception component functions

74 lines of code changed in 1 file:

sbu062 2016-10-03 10:49 Rev.: 1592

fix create method

6 lines of code changed in 1 file:

sbu062 2016-10-03 10:41 Rev.: 1591

array average funcs

96 lines of code changed in 1 file:

sbu062 2016-10-03 09:48 Rev.: 1590

conspecific perception component, the create method

82 lines of code changed in 1 file:

sbu062 2016-10-03 08:52 Rev.: 1589

first prototype of the conspecifics perception components and object

23 lines of code changed in 1 file:

sbu062 2016-10-03 08:28 Rev.: 1588

perception energy reserves

91 lines of code changed in 1 file:

sbu062 2016-10-03 08:27 Rev.: 1587

added hedtools from trunk

0 lines of code changed in 1 file:

sbu062 2016-10-03 08:24 Rev.: 1586

deleted hedtools in conflict

0 lines of code changed in 1 file:

sbu062 2016-10-03 07:28

added hedtools from trunk

27079 lines of code changed in 55 files:

sbu062 2016-10-03 07:26 Rev.: 1583

delete old conflict hedtools, will copy recent from trunk

0 lines of code changed in 54 files:

sbu062 2016-10-03 07:25 Rev.: 1582

delete old conflict hedtools, will copy recent

0 lines of code changed in 1 file:

sbu062 2016-10-02 21:11 Rev.: 1581

fixed intent in the population

17 lines of code changed in 1 file:

sbu062 2016-10-02 20:55 Rev.: 1580

fixed intent for the individual

7 lines of code changed in 1 file:

sbu062 2016-10-02 20:51 Rev.: 1579

create method is now elemental

26 lines of code changed in 1 file:

sbu062 2016-10-02 18:39 Rev.: 1578

converted to elemental in the_body

42 lines of code changed in 1 file:

sbu062 2016-10-02 18:05 Rev.: 1577

fixed intent for the_body

24 lines of code changed in 1 file:

sbu062 2016-10-02 17:44 Rev.: 1576

fixed intent for the_genome

72 lines of code changed in 1 file:

sbu062 2016-10-02 17:15 Rev.: 1575

beautified the_hormones, all procs are now elemental

45 lines of code changed in 1 file:

sbu062 2016-10-02 15:35 Rev.: 1574

fix todo

1 lines of code changed in 1 file:

sbu062 2016-10-02 15:23 Rev.: 1573

fixed all intents for the environment module

27 lines of code changed in 1 file:

sbu062 2016-10-02 14:46 Rev.: 1572

fix intent in timer_cpu

3 lines of code changed in 1 file:

sbu062 2016-10-02 14:20 Rev.: 1571

TODOs for beautifying code and auto-parallel-friendly

2 lines of code changed in 1 file:

sbu062 2016-10-02 13:47 Rev.: 1570

fixed intent in create for spatial and higher order in environment

3 lines of code changed in 1 file:

sbu062 2016-10-02 13:35 Rev.: 1569

deleted extra loop

5 lines of code changed in 1 file:

sbu062 2016-10-02 13:20 Rev.: 1568

position functions for spatial type made elemental

6 lines of code changed in 1 file:

sbu062 2016-10-02 13:08 Rev.: 1567

add_to_history declared pure

3 lines of code changed in 1 file:

sbu062 2016-10-02 12:59 Rev.: 1566

added warning on spatial object type, do not set id at this level

6 lines of code changed in 1 file:

sbu062 2016-10-02 12:48 Rev.: 1565

fixed intent and converted functions to elemental in the environment module

15 lines of code changed in 1 file:

sbu062 2016-10-02 10:34 Rev.: 1564

added individual id to food items plus type-bound functions

62 lines of code changed in 1 file:

sbu062 2016-10-02 09:50 Rev.: 1563

fix debug code, all eaten in safe

8 lines of code changed in 1 file:

sbu062 2016-10-02 09:31 Rev.: 1562

added test for food item is available (not eaten) in food perception proc, plus debug code below

17 lines of code changed in 1 file:

sbu062 2016-10-02 08:41 Rev.: 1561

fix procname conflict with dummy

1 lines of code changed in 1 file:

sbu062 2016-10-02 08:36 Rev.: 1560

minor changes

5 lines of code changed in 1 file:

sbu062 2016-10-01 11:54 Rev.: 1559

fixed minimum food item size, cannot be zero or below

7 lines of code changed in 1 file:

sbu062 2016-10-01 07:56 Rev.: 1558

fixed comments + test code

33 lines of code changed in 1 file:

sbu062 2016-10-01 07:42 Rev.: 1557

function for converting logical to real for csv output, remove fort. files in Makefile clean

46 lines of code changed in 2 files:

September 2016 »

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