doc: use symbols for volume consistently as in box 1
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doc: small addition to t&t
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doc: screenshot for cmd from Windows 10
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set `rate_interval` in command line mode
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doc: document `rate_interval` parameter
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added `Global_Rate_Interval` and adapted GUI for arbitrary discretization interval, CMD need set function
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additional entries for parameter plot menu
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doc: document `show plots_scale_relative` command
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doc: small fix
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doc: add R example
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doc: better text
7 lines of code changed in 1 file:
document tags with `FFA_MODEL_OUTPUT_TAG`
24 lines of code changed in 1 file:
digestibility is 90%
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add tag defined by environment variable `FFA_MODEL_OUTPUT_TAG` to automatically generated file names
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doc: small reformat
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update screenshot for GUI
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document `plots_scale_relative` parameter
8 lines of code changed in 1 file:
in stomach and midgut plots, adapt Y-axis to the `Global_Time_Plots_IS_Relative_Scale` parameter
20 lines of code changed in 2 files:
in GUI parameter table, n of digits number format is defined automatically
> SWGTBF (ID, XVAL, NDIG, IROW, ICOL, COPT)
> NDIG is the number of digits displayed after the decimal point (
> &ge -2). NDIG = -2 means that the number of digits is calculated
> by DISLIN.
2 lines of code changed in 1 file:
added GUI control for `Global_Time_Plots_IS_Relative_Scale` : `plots_scale_relative`
19 lines of code changed in 1 file:
implemented relative and absolute plot switch for Global_Time_Plots_IS_Relative_Scale in GUI
14 lines of code changed in 1 file:
added model parameter `plots_scale_relative` for plotting stomach and midgut volume with relative scale (0:1), cmd interface done, GUI not done yet
48 lines of code changed in 4 files:
comment only
1 lines of code changed in 1 file:
reverted pre-TEST r10629
`svn merge -r HEAD:10629 .`
8 lines of code changed in 2 files:
TEST: need miore debug printing, `n_food_items_midgut`
5 lines of code changed in 2 files:
TEST: experimenting with 6-point sigmoid interpolation pattern for gastric midgut evacuation
27 lines of code changed in 2 files:
TEST: try to use positive link between midgut filling and evacuation time
`htintrpl.exe [0 0.2 1] [1 1.7 50] [0.5] [splines]`
12 lines of code changed in 1 file:
TEST: try to make gastric evacuation inversely dependent on midgut filling
The link is reverse, higher filling causes fast evacuation, empty midgut is slow evacuation, pattern exponential based on`DDPINTERPOL`
Link function : `htintrpl.exe [0 0.8 1] [8 1.2 1] [0.5] [splines]`
8 lines of code changed in 1 file:
added code for Poisson direct method
> The hint’s in the title. I wrote a simple function in Fortran for simulating
> (or sampling) Poisson random variables. (More precisely, I should say
> that the function generates Poisson variates.) I used the simple direct
> method. This method is based on the exponential inter-arrival times of the
> Poisson (stochastic) process.
>
> My code should not be used for large Poisson parameter values (larger than,
> say, 20 or 30), as the code may be too slow. Other methods exist for larger
> parameter values, which I’ve discussed previously.
>
> I just use the standard Fortran function random_number for generating
> (pseudo-)random numbers. I am not an expert in Fortran, but my Poisson
> function seems to work fine. I wrote and ran a simple test that estimates
> the first and second moments, which should match for Poisson variables.
90 lines of code changed in 1 file:
reformat code
4 lines of code changed in 1 file:
obsolete condition deleted
0 lines of code changed in 1 file:
additional debug check `DEBUG_CHECK_SUBZERO_FOOD`
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fix: `max_time` must be integer
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added `max_time` parameter to (check_disappear) method
20 lines of code changed in 1 file:
revert debug to r10621
1 lines of code changed in 1 file:
DEBUG: trying stochastic decay gastric evacuation, (food_item_eaten_mg_check_destruct_decay)
98 lines of code changed in 1 file:
simple test code for decay
39 lines of code changed in 2 files:
fix names of output plots
4 lines of code changed in 2 files:
typo fixed
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plotting script in Gnuplot
2 lines of code changed in 1 file:
no need doi for books
some were wrong
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obsolete piece deleted
3 lines of code changed in 1 file:
better use the same default file for model output arrays
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plot `type='l'`, `lines` obsolete in script
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fix link
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fix links in md
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added links to repo and pdf
4 lines of code changed in 1 file:
repo address in extensions
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info on installation
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make runnable script
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absorption plot
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better legend
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formatting
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added plot with absolute values
17 lines of code changed in 1 file:
file name for plot defined
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header description
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plot 2: ingestion
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use data from parameters file for plotting
9 lines of code changed in 1 file:
doc: typo fixed
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doc: small addition
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doc: added cross-refs to parameters
7 lines of code changed in 1 file:
doc: small typo fixed
1 lines of code changed in 1 file:
need more format characters to displav integer, was `Food provisioning schedule: [ 10**** ] 'food_provision_pattern'`
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use R style for arrays
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doc: document the possibility to use the R array syntax for parameters file
9 lines of code changed in 1 file:
added `c` symbol to ignore list, this allows definingn arrays in R style, e.g. `transport_pattern_r = c(1.0, 0.6 , 0.01, 0.0)`
1 lines of code changed in 1 file:
R batch added for quick call
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do svg
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save plot to pdf
run `R CMD BATCH quick-plot.R`
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better plot from output arrays
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quick plot in R
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added basic readme, need it for gitlab
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extension updated to r10584
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fix revert error dialog
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updated extension to r10582
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cleanup code for Windows version
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normally output csv only cumulative absorption
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removed debug code
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DEBUG: debug code only
19 lines of code changed in 1 file:
always plot cumulative absorption, total ansorption is a debug technical value
TODO: rename `food_volume_absorb_total_midgut` to make clear it is for debugging and internal use
2 lines of code changed in 2 files:
more convenient to have extended output parameter at the top, avoids searching through the code
4 lines of code changed in 1 file:
DEBUG: debugging and testing changes only
64 lines of code changed in 3 files:
describe Windows version and screenshots
7327 lines of code changed in 1 file:
exported r10573
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loak and unlock better synchronous and closing main dialog
4 lines of code changed in 1 file:
in commit, synchronous dialog works better
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lock and unlock better without closing main dialog
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revert better with synchronous gui
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use asynchronous operations with Tortoisesvn
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exported extension with fix r10567
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document must be read-only for revert on Windows to avoid sharing violation error, it is locked
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consistent names
513 lines of code changed in 2 files:
Tortoise version for Windows is enough
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export Windows extension making use of TortoiseSVN
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diffodt works on Windows now, delete debugging
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use the CreateUnoService for shell exec
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bug fixes from r10558 and r10559
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merged r10559: need to go to drive where the temp directory is located in stupid Windows cmd, otherwise it does not ener `TEMPDIR`
4 lines of code changed in 1 file:
need to go to drive where the temp directory is located in stupid Windows cmd, otherwise it does not ener `TEMPDIR`
4 lines of code changed in 1 file:
merged r10557: fix bug deleting original file, fix bug wrong file name, `%FILENAME%` must be quoted on Windows
7 lines of code changed in 1 file:
fix bug deleting original file, fix bug wrong file name, `%FILENAME%` must be quoted on Windows
7 lines of code changed in 1 file:
working with simplified dialog on Windows, diffodt does not call, needs debugging
24 lines of code changed in 2 files:
need a simplified dialog without showing the current revision number and main document URL
This is becase `cmd.exe` must be called on Windows to run the `svn` commands and this causes ugly terminal windows flashing quickly. A simplest solution is to get rid of allo additional informatyion and kust use the TortoiseSVN native dialogs from the simplified dialog buttons
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added full project pdf
33196 lines of code changed in 1 file:
updated for TortoiseSVN API
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two branches for bare svn and tortoisesvn on Windows platform
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check commit from windows, code with minimum tmp delete, ro
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test LO code
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test LO code
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commit ro 776
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try commit from windows 000 readonly
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try commit from windows
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commit 3 readonly
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check if commit works from windows 2
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check if commit works from windows
98 lines of code changed in 1 file:
windows code working, but retains multiple cmd windows
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substituted all bash calls to object.exec method
32 lines of code changed in 1 file:
working windows code
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working prototype for shell, using global CreateUnoService('com.sun.star.system.SystemShellExecute')
12 lines of code changed in 1 file:
added property with Revision tag
63 lines of code changed in 1 file:
export extension from LO Basic code r10532
0 lines of code changed in 1 file:
name at start of title helps in PDF navigation bar, parenthetical note (for researcher) is not really needed
0 lines of code changed in 1 file:
added property `svn:needs-lock` to libreoffice files
`svn propset 'svn:needs-lock' 1 document_file_name`
8 lines of code changed in 15 files:
use a single temporary file, with random name per user instance to avoid conflicts; function (random_string_hex) for this
191 lines of code changed in 2 files:
better UI message
1 lines of code changed in 1 file:
formatting and refs
367 lines of code changed in 1 file:
copied diffodt from the original, it's better to keep all files/tools as a package
322 lines of code changed in 3 files:
moe on installing
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added label to screenshot
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very small changes
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added document foundation text on using LO with version control
44 lines of code changed in 1 file:
added author
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added a bit on installation and adding icon
97 lines of code changed in 1 file:
small additional changes, seems finished
70 lines of code changed in 1 file:
added refs
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formatting
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added revision keyword/tag
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added Lo_SVN extension brief doc, with workflows
1349 lines of code changed in 1 file:
added diffodt description
8411 lines of code changed in 1 file:
started brief manual for Lo_SVN
547 lines of code changed in 1 file:
use string for file read convert to integer with `cint`
285 lines of code changed in 2 files:
more usage tips
1 lines of code changed in 1 file:
make a separate project directory for Lo_SVN
808 lines of code changed in 3 files:
additional tips
1 lines of code changed in 1 file:
very short wait delay also started to work
1 lines of code changed in 1 file:
reduce wait duration, with synchronous operations and correct `Shell` syntax (single command + separate options) delay is not needed
1 lines of code changed in 1 file:
adhere to syntax rules
`Shell (Pathname As String[, Windowstyle As Integer][, Param As String][, bSync]) `
22 lines of code changed in 1 file:
delete obsolete
1 lines of code changed in 1 file:
better comments
4 lines of code changed in 1 file:
commit function now reports errors
47 lines of code changed in 1 file:
added error analysis and reporting to lock and unlock functions
128 lines of code changed in 1 file:
set `svn:needs-lock` property, lock-to-edit policy enabled
0 lines of code changed in 4 files:
release sync with r10502: diffodt system-wide
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diffodt refers to system-wide, no user directory; deleted outdated dialog description, all in xml config exported
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pause after async to make sure the following stat command result is correct
4 lines of code changed in 1 file:
this Lo_SVN code is Linux-specific
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this Lo_SVN extension is Linux-specific
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output extension with upper repo URL, Linux only
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show main repository URI in the dialog, upper text box
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show main repository URI in the dialog, upper text box
52 lines of code changed in 1 file:
show current revision in dialog
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force save before commit; show dialog after commit
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unlock button addad
7 lines of code changed in 1 file:
unlock function
28 lines of code changed in 1 file:
list properties at info, this is useful for checking `svn:needs-lock`
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wait delay enabled in commit, without it document can reload too quickly with lock-to-edit workflow scenario, in wrong read-write mode
1 lines of code changed in 1 file:
delete wait before reload, works immediately
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update function: close main svn commit dialog and reload after update
12 lines of code changed in 1 file:
dialog with lock-to-edit button
12 lines of code changed in 1 file:
implemented lock-to-edit function; force reload document after commit to sync with the latest commit: it is safe and works well with "svn:needs-lock" property-enabled documents
46 lines of code changed in 1 file:
close main svn dialog after revert
4 lines of code changed in 1 file:
fixed update function (no shell called) and implemented new Revert function
31 lines of code changed in 1 file:
comment on getting directory from `Environ(TEMP)`
2 lines of code changed in 1 file:
new version of extension, deleted private directories, Linux only
0 lines of code changed in 1 file:
moved to library Lo_SVN
7 lines of code changed in 1 file:
this is moved to Lo_SVN library, remove user directories
4 lines of code changed in 1 file:
exported extension Lo_SVN
0 lines of code changed in 1 file:
added Dialog (exported) for LibreOffice svn macro
7 lines of code changed in 1 file:
do not reload document at update, more ibntuitive
3 lines of code changed in 1 file:
notes on dialog structure
9 lines of code changed in 1 file:
use line input for strings, better resilence
2 lines of code changed in 1 file:
procedure to show svn info added
54 lines of code changed in 1 file:
check if document under version control, forgotten stub implemented
5 lines of code changed in 1 file:
procedure to reload the document
22 lines of code changed in 1 file:
formatted MsgBox constructs
29 lines of code changed in 2 files:
basic Subversion integration macro for LibreOffice Basic
20 lines of code changed in 1 file:
a few typos fixed
0 lines of code changed in 1 file:
added 'Simulation' in peer-review
0 lines of code changed in 1 file:
format legend fig. 3
0 lines of code changed in 1 file:
Ivar's changes
> From: Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>, Jarl Giske <Jarl.Giske@uib.no>
> Subject: Comments and corrections from me
> Date: Mon, 8 Feb 2021 14:55:15 +0000
>
> Pls find enclosed.
>
> IvarR
0 lines of code changed in 1 file:
fixed some comments from Ivar
> From: Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>, Jarl Giske <Jarl.Giske@uib.no>
> Subject: Comments and corrections from me
> Date: Mon, 8 Feb 2021 14:55:15 +0000
>
> Pls find enclosed.
>
> IvarR
Except serial comma before 'and', we use UK style.
0 lines of code changed in 1 file:
wre not masters
0 lines of code changed in 1 file:
next paragraphs should refer to project description, as relevance is now separate
0 lines of code changed in 1 file:
darker font
19 lines of code changed in 2 files:
added calendar yea bar below
165 lines of code changed in 2 files:
typo fixed
0 lines of code changed in 1 file:
better text callout
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: HAVBRUK revision r10452 (relevance r10454)
> Date: Sun, 7 Feb 2021 19:38:21 +0000
>
> Not it may seems as reduce and replace is the goal of the model
> I would either skip this sentence
>
> The model will replace and reduce the use of live fish in research.
>
> Or I would add an "also":
>
>
> The model will also replace and reduce the use of live fish in research.
0 lines of code changed in 1 file:
a different callout text, it should be short max. 4 lines to fit all to one page
>From: Jarl Giske <Jarl.Giske@uib.no>
>To: Sergei Budaev <Sergey.Budaev@uib.no>
>Subject: RE: HAVBRUK revision r10452 (relevance r10454)
>Date: Sun, 7 Feb 2021 19:16:14 +0000
>
>But why do you want to say the same about the 3Rs twice in the short
>relevance text?
0 lines of code changed in 1 file:
added reduce and replace in calout text
0 lines of code changed in 1 file:
merged Jarl's changes
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: [automatic] New HAVBRUK revision r10452
> Date: Sun, 7 Feb 2021 13:41:18 +0000
>
> I keep suggesting these changes.
> -j
We cannot delete "Aquaculture research" under the project title because it
will then not agree with the NFR template
0 lines of code changed in 1 file:
added CVs, docx converted to Word XML
0 lines of code changed in 3 files:
foresee -> forecast
0 lines of code changed in 1 file:
changed callout (yellow)
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: HAVBRUK revision r10444
> Date: Sun, 7 Feb 2021 10:39:41 +0000
>
> Can you also change this to the yellow text in the Relevance document?
>
> Fish welfare is a major component in sea lice infestations, which again is
> the main reason the government has introduced the traffic light system to
> regulate the industry (Myksvoll et al 2020), and for the very few new
> permits for increased salmon production since 2013.
>
> (There is not full stop, but close to.)
>
> Jarl
0 lines of code changed in 1 file:
font fix
0 lines of code changed in 1 file:
added a note on references
> The relevance document also needs a line that the references are in the
> project description, or else the references should be at the end of the
> relevance text. (I do not know whether the reviewers will get to read the
> relevance document, or only the RCN aquaculture staff.)
0 lines of code changed in 1 file:
fig. 5 slightly up
0 lines of code changed in 1 file:
very small change in footnote
0 lines of code changed in 1 file:
fixed fish-talk-to-me in relevance
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>, Sergey Budaev <sbudaev@gmx.com>
> CC: Ivar Rønnestad <Ivar.Ronnestad@uib.no>, Floriana Lai <Floriana.Lai@uib.no>
> Subject: RE: HAVBRUK revision r10444
> Date: Sun, 7 Feb 2021 10:20:56 +0000
>
> Good to see that the text is getting close!
> 1) Once we have decided on which reviewers we shall suggest, we should
> make sure they find themselves in the text. Maybe we should suggest Marion
> Dawkins? (I was also thinking of Donald Broom, but he is almost 80 years old.)
>
> 2) There is a mismatch between the explanation for "fish talk to me" in the
> footnote on Harald Sveier and Lerøy SG versus in the relevance document. I
> think we shall change the footnote (from referring to PFF to referring to
> coping) by using (almost) the same wording as in the relevance document.
FIXED, DONE
>
> 3) The relevance document does not tell the reader that it is about
> relevance. I suggest you change the title from "Aquaculture Research" to
> "Relevance for aquaculture". The relevance document also needs a line that
> the references are in the project description, or else the references should
> be at the end of the relevance text. (I do not know whether the reviewers
> will get to read the relevance document, or only the RCN aquaculture staff.)
There is a clear header text: - "Relevance of the project to the selected
topics under the call for proposals" with red tag "FPRV (do not remove)". So
it is clear. The "Aquaculture research" is the verbatim name of the research
topic, as stated in the template. I do not think we need to change it here.
>
> 4) (And the budget may need a revision to include TDI, will talk to Heidi
> on Monday.)
>
> Jarl
0 lines of code changed in 1 file:
title of the document includes sergey budaev, then the name appears in the index panel for easy navigation
0 lines of code changed in 1 file:
removed revision tags from text (footer)
0 lines of code changed in 2 files:
small reformat style
0 lines of code changed in 1 file:
deleted revision tags from figures
697 lines of code changed in 8 files:
relevance section deleted from project description, figure position etc fixed acordingly
0 lines of code changed in 2 files:
attach relevance document to email target
1 lines of code changed in 1 file:
use pattern rules
3 lines of code changed in 1 file:
add relevance doc in notification message
1 lines of code changed in 1 file:
added relevance document to makefile
33 lines of code changed in 1 file:
formatting
0 lines of code changed in 1 file:
separate relevance document
0 lines of code changed in 1 file:
fix empty p 12, last empty paragraph after references section 1pt
0 lines of code changed in 1 file:
figure 2 goes up
0 lines of code changed in 1 file:
typo
0 lines of code changed in 1 file:
delete tag on footer
0 lines of code changed in 1 file:
fix footer
0 lines of code changed in 1 file:
added tags to doc properties
0 lines of code changed in 1 file:
added and edited cv
0 lines of code changed in 1 file:
fix year in LeuSENSE
> From: Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: Re: CVs
> Date: Fri, 5 Feb 2021 14:37:31 +0000
>
> 2017-21
>
0 lines of code changed in 1 file:
fixed LeuSENSE years
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: LeuSENSE: 2017-2020
> Date: Fri, 5 Feb 2021 14:23:27 +0000
>
> https://www.uib.no/en/persons/Ana.Gomes#uib-tabs-current-projects
> 2017-2020
>
> (Research collaborator in the RCN project LeuSENSE (2017-2020) - Exploring
> leucine’s role in feed intake and growth under stress: from sensing to
> action (PI: Ivar Rønnestad, UiB; Grant no. 267626).)
0 lines of code changed in 1 file:
add Floriana to notifications
1 lines of code changed in 1 file:
added frame with major challenge at p1
> 2)
> It would be good to have this red text (or a modification) at page 1,
> rather saying that these concepts will be explained at p 2-3. "Red text"
> deep into the document is not so effective.
0 lines of code changed in 1 file:
merged Jarl's comments from email, red text not placed on p1 so far
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>,
> Ivar Rønnestad <Ivar.Ronnestad@uib.no>,
> Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: HAVBRUK revision r10422
> Date: Fri, 5 Feb 2021 12:40:47 +0000
>
> Very good!
> Three things:
>
> 1)
> I suggest we change
>
> The major knowledge challenge is therefore to develop a predictive model
> that can be integrated into the precision aquaculture environment, to foresee
> troubles before they grow big.
>
> to
>
> The major knowledge challenge for fish wellbeing is therefore to develop a
> predictive model that can foresee troubles before they grow big.
>
> 2)
> It would be good to have this red text (or a modification) at page 1,
> rather saying that these concepts will be explained at p 2-3. "Red text"
> deep into the document is not so effective.
>
> 3)
> Fig 5: this indicates 4 full year. Either change text to a first (short)
> year or change label to say a year starts 1 Oct.
>
> It is still possible to sva space by another look at the figures. Move them
> to the right margin, and cut the tail of the fish. Fig 1 can be shrinked.
>
> Jarl
0 lines of code changed in 1 file:
moved figures for fit, deleted highlights
0 lines of code changed in 1 file:
further abridging of references and some text
got 11 pages total
0 lines of code changed in 1 file:
reference style condension done, need to do more
0 lines of code changed in 1 file:
mobe fig. 5 to fil reference list
0 lines of code changed in 1 file:
started manual editing reference list: deleted doi (`doi:.*$`) etc
0 lines of code changed in 1 file:
merged Jarl's suggestions for changes unchanged
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: FW: NFR project, with deadline 10 Feb
> Date: Fri, 5 Feb 2021 09:43:46 +0000
>
> Suggestions for PFF removals
0 lines of code changed in 1 file:
reviewed and deleted some references
0 lines of code changed in 1 file:
reference style Aquaculure with abbreviated journals
0 lines of code changed in 1 file:
anchor fig 3 to page, better text flow, switched to LibreOffice 7.1
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style change: titles, reduced top spacing to 0.05 cm, as below
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merged Jarl's small changes from 'project 04 Feb jg.docx'
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Ivar Rønnestad <Ivar.Ronnestad@uib.no>, Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: HAVBRUK revision r10411
> Date: Thu, 4 Feb 2021 18:01:06 +0000
>
> Here I have deleted one paragraph and many small words etc to save a
> line here and there. The next job may be to shrink the literature list
> substantially. This will also save space in the main text. (Very seldom use
> more than 3 citations to back a statement, maybe not more than 1-2.)
> I agree with Ivar: some extra space (like 4pt) should be above all headings.
> Thereafter one should consider if the figures could be smaller.
> And then consider if we repeat ourselves in the text, that is quite likely.
> -j
Note:
Left a reduced paragraph
"The main participants of the project maintain close links with the salmon
industry ..." - this is a crucial positive message for reviewers!
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fixed highlighted remains, moved figures in place
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check and fix refs: n.d. unpublished; TEG and MDB groups abbreviation
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merged Jarl's small changes from 'ch 2.3-4 jg.docx'
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: sharepoint versions
> Date: Thu, 4 Feb 2021 13:33:22 +0000
>
> Just some small things from the last sections of the text
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merged suggested changes by Jarl from 'suggested WP5.docx'
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merged Ivar's comments and changes from 'project – endret av Ivar Rønnestad 0402.docx
1. Relevance to the call is minimally changed to fix the side comment:
> unclear:
> model (Digital twin) of what (lack of) welfare is for a fish with tools
Jarl did huge changes yo it before then.
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merged changes by Jarl from `project jg0402.docx`
EXCLUSIONS/QUESTIONS:
1. The sense of the phrase completely altered:
> Most animals will detect such problems much earlier than they become apparent
> to the human observer who then can respond to avoid or mitigate them (Broom &
> Johnson, 2019; Dawkins, 1998; Kristiansen, Fernö, et al., 2020; Kristiansen,
> Madaro, et al., 2020). However, maintenance in captivity largely precludes
> the fish from solving many of their coping problems on their own
The original idea was that animals are more efficient in managing their own
needs, responding to their subjective states etc. than the humans. But when
animals are kept by humans, they cannot execute this capacity and management
by humans is the only option. It is therefore implied that humans MUST
understand the animals' internal state to care for them efficiently.
2. I do not agree with the idea that model is (much or always) better than
intuition
> A model is much better than our intuition to interpret what these data tell
> about the fish.
Perhaps, a very experienced fish culturist can detect many problems early
from his/her intuition better than many models (all models are bad and
grossly incomplete!). A major advantage of the model is that model allows
to not relay on unique capacities of the best human exemplars and do more
or less satisfactory in majority of cases. So even mediocre workers (lacking
much experience and intuition) can be at least efficient.
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small fix: we won't collect new data and do new experiments
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fix some refs
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add reference to Changes.html
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removed obsolete placeholders
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added timing of WPs, fig.4 reduced
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reduced margins to minimum
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fix font colour
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color coding and small rewording
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use color coding as in fig. 5
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added fig. 5 gnatt diagram with time course
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small modification wp4
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replace tag
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added fig 5 to make
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added gnatt chart fig. 5
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added 4.2 Project organisation and management
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add fig.4
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more compact figure 4
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added figure 4
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figure 4: relationships betwen all WPs
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Word docx file should be last to upload to safeguard against file locking by another online user on sharepoint. Then the target does not fail other uploads
{{{
rclone copy project.docx uib_sharepoint:TEGsvn/project-havbruk-21/
2021/02/03 14:13:10 ERROR : project.docx: Failed to copy: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:10 ERROR : Attempt 1/3 failed with 1 errors and: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:10 ERROR : project.docx: Failed to copy: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:10 ERROR : Attempt 2/3 failed with 1 errors and: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:11 ERROR : project.docx: Failed to copy: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:11 ERROR : Attempt 3/3 failed with 1 errors and: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
2021/02/03 14:13:11 Failed to copy: nameAlreadyExists: An upload session already exists for this file (is it a OneNote file?)
Makefile:119: recipe for target 'push' failed
}}}
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Ivar's changes on chapter 3.1
> From: Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> To: Jarl Giske <Jarl.Giske@uib.no>, Sergei Budaev <Sergey.Budaev@uib.no>
> CC: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: Re: chapter 3.1
> Date: Wed, 3 Feb 2021 12:54:32 +0000
>
> Minor changes suggested.
>
> IvarR
>
> **************************************************
> Ivar Rønnestad, PhD, Professor
> Department of Biological Sciences, University of Bergen, Bergen, NORWAY
>
> Cell: +47 926 47 219
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Jarl's ch 4.1
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: ch 4.1
> Date: Wed, 3 Feb 2021 12:14:06 +0000
>
> A start on this section ..
0 lines of code changed in 1 file:
some small changes to Jarl's text
- reduce emphasis on digital twin
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Jarl's new chapter 3.1
> Date: Wed, 3 Feb 2021 11:44:56 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Cc: Sergei Budaev <Sergey.Budaev@uib.no>, Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> Subject: chapter 3.1
>
> Suggestion for new text
>
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fisk to fish
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Jarl's changes in novelty and ambition
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> CC: Sergei Budaev <Sergey.Budaev@uib.no>, Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> Subject: Novelty and ambitions
> Date: Wed, 3 Feb 2021 10:15:57 +0000
>
> Suggestion for new text
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changes to relevance: Tried to make it more acceptable by fish people by avoiding such worda as "feeling"
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Jarl's new relevance
> Date: Wed, 3 Feb 2021 08:39:42 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Cc: Ivar Rønnestad <Ivar.Ronnestad@uib.no>
> Subject: RE: [automatic] New HAVBRUK revision r10377
>
> Suggestion for a new take on the relevance chapter.
> -j
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digestion submodel renamed to feeding submodel throughout the text
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`all` target includes `figs`
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small alterations behor I go to office
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attention on top less confusing
332 lines of code changed in 2 files:
auto-lock with `svn:needs-lock` requires more hassle on non intensely shared files
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reorder text
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added `mime-type` and `needs-lock` svn keywords
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set default locking `svn propset svn:needs-lock "true" project.fodt`
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properties
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add tag in document properties
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added keywords
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temlate for howto doc
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fix path
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added another tag in description
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added svn tags to document properties
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some changes suggested by Ivar, after Zoom meeting Tuesday
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enable non-debug `MAILTO`
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email target: more instructions text and better message formatting
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shorter title to fit NFR web form 140 chars
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added info on growth submodel unit
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WP5 added social acceptance
> Challenge: up to now we have not shown how the model may
> impact wellbeing, and how it may impact social acceptance.
> Are they coming after here?
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replace figures 2 and 3 to agree with fig refs
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Jarl's comments on r10350: Challenges added to WPs
> Date: Mon, 1 Feb 2021 10:55:18 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: [automatic] New HAVBRUK revision r10352
>
> Here are some suggestions for the WPs.
> I think we need to be very clear that the project is good for fish welfare.
> -j
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fix ref and rebuild
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better notification, figs after master fodt
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more recent citate to Sterling on allostasis: book 2020
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good to have more info in files: master doc and figures
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integrated Jarl's comments and changes
> Date: Sun, 31 Jan 2021 16:07:55 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: [automatic] New HAVBRUK revision r10346
>
> Suggestion for a slight rewrite of the Relevance chapter attached.
> -j
> ---------------------------------------------------------------------
> Date: Sun, 31 Jan 2021 17:24:13 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: [automatic] New HAVBRUK revision r10346
>
> Some comments and suggestions on the text, before the WP descriptions.
> -j
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