Changed the calculations of starvation to survival = survival * (1/starvation_limit) * (reserves/reserves_max)
5 lines of code changed in 3 files:
first time commit, new code to make some plots of forward and backward model output [TL]
248 lines of code changed in 2 files:
fixed length argentine, added function to calculate weight by length for argentine, fixed ts in years [TL]
176 lines of code changed in 5 files:
Posix C call in (SET_ENVIRONMENT_VARIABLE) does not work stably, crashing and non-execution, deleted so far, needs more testing
-`svn merge -r HEAD:9365 .`
2 lines of code changed in 3 files:
added tests for (SET_ENVIRONMENT_VARIABLE) - Posix subroutine unstable
- will be deleted
38 lines of code changed in 2 files:
added (SET_ENVIRONMENT_VARIABLE) to (re)set system environment variable from within Fortran
44 lines of code changed in 1 file:
merged latest changes from BASE_UTILS r9365
69 lines of code changed in 1 file:
added single scalar function frontend to (CSPLINE), r9365
77 lines of code changed in 2 files:
added single scalar function frontend to (CSPLINE)
77 lines of code changed in 2 files:
vector-based spline functions declared pure, merged r9363
2 lines of code changed in 1 file:
merged latest change from BASE_UTILS r9362
2 lines of code changed in 1 file:
purified vector-based functions, forgotten
2 lines of code changed in 1 file:
added cover page for binding
0 lines of code changed in 2 files:
merged latest changes in BASE_UTILS v 1.4 r9358
73 lines of code changed in 1 file:
deleted dev branch
0 lines of code changed in 1 file:
cubic spline converted to **pure**, merged r9355 from dev branch
0 lines of code changed in 4 files:
cubic spline converted to **pure**, merged r9355 from dev branch
73 lines of code changed in 1 file:
Oracle Fortrandoes not support assumed size parameter array declaration `(*)`, needs explicit size
8 lines of code changed in 1 file:
purified cubic spline procesures (CSPLINE) and whole private backend
47 lines of code changed in 1 file:
purified pchdf, converted as subroutine
0 lines of code changed in 2 files:
inform on grid and show interpolation grid points if no interpolation X array provided, merged r9349 and r9350
0 lines of code changed in 2 files:
display info on kind of plot, grid or data, on plot title for convenience
5 lines of code changed in 1 file:
show dots of interpolation grid if no interpolation points are provided
- this is done for playing with and tweaking the function plot
because grid points would make it easier to see which points
should be moved and where. PGPLOT-based program does show
grid points as small dots.
13 lines of code changed in 1 file:
added more utils
12648 lines of code changed in 5 files:
disable all information diagnostics from DISLIN in non-debug mode
10 lines of code changed in 2 files:
merged latest BASE_UTILS v1.4 r9343
2171 lines of code changed in 1 file:
include graphics backend intp the initial help screen
0 lines of code changed in 12 files:
documented the new (CSPLINE) and (CSPLINE_VECTOR)
26 lines of code changed in 1 file:
deleted development branch
0 lines of code changed in 7 files:
updated doc on plotting tools, cubic spline backend not added yet
40 lines of code changed in 1 file:
migrate to DISLIN incorporated DISLIN-based graphic tools from devel. branch
- PGPLOT library works fine on Unix/Linux but its newer versions (via GrWin) could break runtime, GrWin changed license and from v. 1.10 essential GrWin server supplies with a time-limited license for one year. This limits the usage of PGPLOT on Windows
- DISLIN works fine on Windows and Linux with all compilers, Windows ifort not tested and supported on Windows, GNU gfortran works fine
7 lines of code changed in 9 files:
small fixes on Windows gfortran, deleted references to GrWin; Build OK, Intel ifort on Windows not tested, so far disabled
3 lines of code changed in 1 file:
test build code for Windows
12 lines of code changed in 1 file:
disable DEBUG mode, disable all DISLIN messages via (ERRMOD) `ALL`
- `htintrpl` now reports algorithm instead of file
15 lines of code changed in 3 files:
cleanup
25 lines of code changed in 1 file:
get rid of DISLIN warnings
- (errmod) must go after (disini)
- `'ALL', 'OFF'` arguments completely disable DISLIN outputs and notifications
3 lines of code changed in 1 file:
migrated **htintrpl** to **DISLIN** graphics library
- warnings produced due to calling (qplsca) after (qplcrv)
0 lines of code changed in 2 files:
reformat, delete references to PGPLOT
28 lines of code changed in 1 file:
migrated **hthist** to **DISLIN** graphics library
0 lines of code changed in 2 files:
comments on DISLIN builds on various platforms
11 lines of code changed in 1 file:
build instruction for Oracle f95
- build tested
6 lines of code changed in 1 file:
default no-graphics file name as parameter
4 lines of code changed in 1 file:
check availability of graphics on Unix systems
37 lines of code changed in 1 file:
fix title, deleted references to pgplot and grwin
6 lines of code changed in 1 file:
migrated **htscatter** to **DISLIN** graphics library
52 lines of code changed in 1 file:
test data big size
0 lines of code changed in 1 file:
branch for migration of tools to DISLIN
0 lines of code changed in 5 files:
better example for (cspline)
4 lines of code changed in 1 file:
`impure` taints Oracle Fortran, fixed header docs for (CSPLINE)
30 lines of code changed in 1 file:
added cubic splines to **htintrpl** graphics
14 lines of code changed in 1 file:
added vector-based wrappers for (CSPLINE)
69 lines of code changed in 1 file:
restructured timestep and day loop indexing to allow for higher time resolution and selection of single days to run [TL]
90 lines of code changed in 4 files:
test for , k8
32 lines of code changed in 1 file:
test for `CSPLINE`, k4
24 lines of code changed in 1 file:
transformed for R8, for HEDTOOLS
39 lines of code changed in 1 file:
added cubic spline interpolation `CSPLINE` procedure for `kind=8`
1043 lines of code changed in 1 file:
added cubic cpline interpolation `CSPLINE` procedure for `kind=4`
1076 lines of code changed in 1 file:
renamed inner private procs kind-specific
17 lines of code changed in 1 file:
added public interface for basic real
8 lines of code changed in 1 file:
set real kind
32 lines of code changed in 1 file:
test array-based version
- test passed
1 lines of code changed in 1 file:
process optional parameters in main interface subroutine
20 lines of code changed in 1 file:
explicit intent for all arguments
26 lines of code changed in 1 file:
set arguments in modern style
8 lines of code changed in 1 file:
deleted scratch arrays from module interfaces
7 lines of code changed in 1 file:
test data
12 lines of code changed in 3 files:
f90 version converted fo module **mod_spline.f90**
- test program still here for testing
1148 lines of code changed in 1 file:
wrong file, missed f90
0 lines of code changed in 1 file:
wrong file, needed f90
0 lines of code changed in 1 file:
utils added
5369 lines of code changed in 13 files:
autoconverted fixed form .f to .f90 (via f77_to_f90)
1121 lines of code changed in 1 file:
fixed error in day loop structure (environment is now 365 days irrespective of modelling timeframe) [TL]
9 lines of code changed in 3 files:
uploaded [TL]
0 lines of code changed in 1 file:
code uploaded [TL]
490 lines of code changed in 13 files:
k-means clustering in any dimension
383 lines of code changed in 2 files:
k-Gaussian mixture clustering in any dimension with EM
733 lines of code changed in 2 files:
added cubic spline
1132 lines of code changed in 2 files:
added SAGRAD project for NN
2674 lines of code changed in 23 files:
added Fortran bindings for FANN 2.1 from http://leenissen.dk/fann/wp/language-bindings/
1899 lines of code changed in 3 files:
no need in `DISABLE` auth group, **judyjinn** finally deleted
0 lines of code changed in 1 file:
added text [AB]
1 lines of code changed in 1 file:
refined user rights
1 lines of code changed in 1 file:
added group TOMLANG and set limited access rights
8 lines of code changed in 1 file:
this is a test from Tom
0 lines of code changed in 1 file:
first directory for the pandora project models
0 lines of code changed in 1 file:
added screenshots to doxygen docs
6 lines of code changed in 4 files:
added path for documentayion and doxygen graphics
0 lines of code changed in 1 file:
doxygen comments and cleanup only
26 lines of code changed in 1 file:
added label
2 lines of code changed in 1 file:
added version number to main window header at GUI mode
1 lines of code changed in 1 file:
cleanup unused idx variables
6 lines of code changed in 1 file:
cleanup debug printouts
1 lines of code changed in 1 file:
deleted debug outputs in error trapping (report_error_gui)
2 lines of code changed in 1 file:
done all range checks in parameter table widget, GUI mode
37 lines of code changed in 1 file:
checking proportion range in parameter table widget, GUI mode
16 lines of code changed in 1 file:
checking ratio range in parameter table widget in GUI mode
13 lines of code changed in 1 file:
done float parameters in table widget in GUI mode, checking for range (0:1) not done yet
15 lines of code changed in 1 file:
done `food_provision_pattern` reset from parameter table widget in GUI mode
- `food_provision_pattern` is converted from two-element string
38 lines of code changed in 1 file:
formatting only
1 lines of code changed in 1 file:
progress bar in GUI mode limited by maximum N of steps
- number of steps was equal to the total time steps, if that differ
by changing parameters progress bar was broken
- now the number of steps and step size are both 100, so progress
bar translates to percents
10 lines of code changed in 3 files:
sxtarted to implement callback routine for parameter table widget
54 lines of code changed in 2 files:
save model output data in main menu, GUI mode
2 lines of code changed in 1 file:
commented callback routine for table widget, GUI mode
3 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
(output_arrays_save_csv), added GUI mode error reporting
27 lines of code changed in 2 files:
done save output arrays in GUI mode
37 lines of code changed in 2 files:
initial skeleton for current plot save
13 lines of code changed in 1 file:
added processing code for "Run model" in main menu
8 lines of code changed in 1 file:
done plot absorption in GUI mode
53 lines of code changed in 1 file:
done plot volume of food in midgut in GUI mode
53 lines of code changed in 1 file:
done plot volume of food in stomach in GUI mode
55 lines of code changed in 1 file:
done plot appetite in GUI mode
58 lines of code changed in 1 file:
done plot n provided in GUI mode
55 lines of code changed in 1 file:
done plot n not ingested in GUI mode
58 lines of code changed in 1 file:
autorun model for better usability in GUI mode
1 lines of code changed in 1 file:
plot total ingested in GUI mode
84 lines of code changed in 1 file:
reformat, progress bar done
5 lines of code changed in 2 files:
progress bar smooth
2 lines of code changed in 2 files:
progress bar shows in adjustable steps
6 lines of code changed in 3 files:
progress bar options
1 lines of code changed in 1 file:
done progress bar for GUI mode
12 lines of code changed in 2 files:
done progress bar in GUI mode, working
18 lines of code changed in 1 file:
(do_run_test_run): added working wrapper to test_run
12 lines of code changed in 1 file:
did GUI code for appetite function and Michaelis-Menten midgut pattern
29 lines of code changed in 1 file:
(do_plot_appetite_function): added widget controls for GUI, extra (disin)i call obsolete deleted
15 lines of code changed in 1 file:
copied appetite function from command line interface, unchanged
33 lines of code changed in 1 file:
move page definition out of plotting procedure to main gui caller
12 lines of code changed in 1 file:
variable now obsolete
1 lines of code changed in 1 file:
GUI, break long lines, fix wrong last row number in the table
8 lines of code changed in 1 file:
GUI, table of parameters done, added parameter config file examples that were missing
85 lines of code changed in 2 files:
widget index for parameter table and editor
9 lines of code changed in 1 file:
better shorter name
3 lines of code changed in 1 file:
progress bar, specific widget index
2 lines of code changed in 1 file:
bel widgets all return no_use id index
13 lines of code changed in 1 file:
adjust main top menu bar
4 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
fix widget structure scheme, better name
40 lines of code changed in 1 file:
added comment: widget structure
21 lines of code changed in 1 file:
added progress bar and widget separators
10 lines of code changed in 1 file:
control widgets went left for better screen space use, deeper window
40 lines of code changed in 2 files:
move global parameters to params widget
9 lines of code changed in 1 file:
data save button
4 lines of code changed in 1 file:
plot arrea now user defined parameters
16 lines of code changed in 4 files:
better proportions
1 lines of code changed in 1 file:
better page size defaults
8 lines of code changed in 2 files:
added labels
10 lines of code changed in 1 file:
horizontal arrangement of GUI, big graphics area
47 lines of code changed in 1 file:
axes titles fix
4 lines of code changed in 2 files:
axes titles
2 lines of code changed in 1 file:
white space only
0 lines of code changed in 1 file:
adjust widgets
4 lines of code changed in 2 files:
drop list with output formats
18 lines of code changed in 1 file:
better name
5 lines of code changed in 1 file:
consistent name with gui version
4 lines of code changed in 1 file:
started user setting for dislin graphic parameters, page size
16 lines of code changed in 4 files:
parameter now obsolete
0 lines of code changed in 1 file:
adjust plot page proportions, parameters should go to parameters file
1 lines of code changed in 1 file:
test more widgets
27 lines of code changed in 1 file:
check if model was run at least once before saving plots with `save` command
- this was fixed for `plot` earler
42 lines of code changed in 1 file:
use `setfil` to define file name for plots, simplified
10 lines of code changed in 1 file:
make parameters in table editable
3 lines of code changed in 1 file:
added button labels
41 lines of code changed in 1 file:
better id name
7 lines of code changed in 1 file:
comment fix
1 lines of code changed in 1 file:
started tweaking GUI, added table, rearrange widgets
63 lines of code changed in 1 file:
debug code
36 lines of code changed in 2 files:
feedback output on `save output_data` command
- in absence of feedback it was confusing
2 lines of code changed in 1 file:
`midgut_maxdur` parameter now set to minutes, not seconds, still integer
- fixed certain parameter reports
16 lines of code changed in 6 files:
comments fixed
2 lines of code changed in 1 file:
`digestion_delay` parameter now set to minutes, not seconds, still integer
- absorption in (fish_midgut_update_from_stomach) checks object component ingestion_delay not global `Global_Digestion_Delay_Min`
20 lines of code changed in 6 files:
in (zero) method use `delay` parameter because it is used both for stomach and midgut
- `ingestion_delay` was confusing in midgut because it should refer to digestion delay
12 lines of code changed in 1 file:
`ingestion_delay` parameter now set to minutes, not seconds, still integer
17 lines of code changed in 6 files:
fix broken images in PDF doc output, merged r9193
1 lines of code changed in 1 file:
`--destination` option can break images in final PDF
1 lines of code changed in 1 file:
comments that start with `#` are ignored
7 lines of code changed in 1 file: