May 2021 Commit Log

Number of Commits:
71
Number of Active Developers:
5
nfijg 2021-05-31 19:05 Rev.: 11203

added parameter panicthreshold

606 lines of code changed in 4 files:

sbu062 2021-05-28 17:34 Rev.: 11202

send notification on finishing job

4 lines of code changed in 3 files:

sbu062 2021-05-28 17:17 Rev.: 11201

some typos fixed

10412 lines of code changed in 1 file:

sbu062 2021-05-28 14:30 Rev.: 11200

apply patch from simulation, worked well, Limit maximum level of sex hormones to 10.0 to avoid huge growth of it and reproductive beyond limits
Patch here:
{{{
Index: m_body.f90
===================================================================
--- m_body.f90 (revision 10934)
+++ m_body.f90 (working copy)
@@ -1439,15 +1439,15 @@
if (length_increment > TOLERANCE_LOW_DEF_SRP) then
if (this%is_male()) then
!> - If the agent is **male**, **testosterone** is incremented.
- call this%testosterone_set( &
+ call this%testosterone_set( min( 10.0_SRP, &
this%testosterone_get() + &
- this%testosterone_get() * steroid_increment_factor )
+ this%testosterone_get() * steroid_increment_factor ) )
else
!> - If the agent is **female**, **estrogen** is incremented.
!! .
- call this%estrogen_set( &
+ call this%estrogen_set( min( 10.0_SRP, &
this%estrogen_get() + &
- this%estrogen_get() * steroid_increment_factor )
+ this%estrogen_get() * steroid_increment_factor ) )
end if
!> If there was no growth and the gonadal steroids are not incremented,
!! the current values are still saved in the history stack by calling
}}}

160 lines of code changed in 40 files:

sbu062 2021-05-28 14:22 Rev.: 11199

fix power factor

80 lines of code changed in 69 files:

sbu062 2021-05-28 11:46 Rev.: 11198

no-reentrance plot is not best example

2271 lines of code changed in 1 file:

sbu062 2021-05-28 11:44 Rev.: 11197

small changes here and there

1906 lines of code changed in 1 file:

sbu062 2021-05-28 11:33 Rev.: 11196

first full version of the presentation draft

167207 lines of code changed in 1 file:

sbu062 2021-05-27 07:10 Rev.: 11195

command to retain limited subset of agents

3 lines of code changed in 1 file:

sbu062 2021-05-27 07:09 Rev.: 11194

collect file names if order is wrong in array

4 lines of code changed in 1 file:

sbu062 2021-05-26 21:23 Rev.: 11193

implemented looping for arbitrary collection of data files

46 lines of code changed in 1 file:

sbu062 2021-05-26 19:59 Rev.: 11192

print means at the end

2 lines of code changed in 1 file:

sbu062 2021-05-26 19:52 Rev.: 11191

adaptation for stand-alone running

11 lines of code changed in 1 file:

sbu062 2021-05-26 19:25 Rev.: 11190

comment

3 lines of code changed in 1 file:

sbu062 2021-05-26 19:23 Rev.: 11189

stripe any punctuation, alternatively use `'s/,//g'`

1 lines of code changed in 1 file:

sbu062 2021-05-26 19:21 Rev.: 11188

user output prefix

205 lines of code changed in 3 files:

sbu062 2021-05-26 19:19 Rev.: 11187

batch conversion script works now: convert csv behaviours to sitings for complexity analysis

6 lines of code changed in 1 file:

sbu062 2021-05-26 14:24 Rev.: 11186

alphabet is 9 not 2

1 lines of code changed in 1 file:

sbu062 2021-05-26 14:20 Rev.: 11185

add project data

201 lines of code changed in 3 files:

sbu062 2021-05-26 14:06 Rev.: 11184

use real variable names

9 lines of code changed in 1 file:

sbu062 2021-05-26 13:40 Rev.: 11183

calculate complecity BDM

25 lines of code changed in 1 file:

sbu062 2021-05-26 12:46 Rev.: 11182

basic aocc functions for strings

82 lines of code changed in 1 file:

sbu062 2021-05-26 12:41 Rev.: 11181

stripe and delete commas to produce plain strings for acss

5 lines of code changed in 1 file:

sbu062 2021-05-26 12:15 Rev.: 11180

copied scripts from utils

54 lines of code changed in 2 files:

sbu062 2021-05-26 12:11 Rev.: 11179

added algorithmic complexity code from OACC
https://github.com/algorithmicnaturelab/OACC.git

8321 lines of code changed in 3 files:

nfijg 2021-05-24 13:13 Rev.: 11178

simplified SRvertical

198 lines of code changed in 4 files:

nfijg 2021-05-23 08:07 Rev.: 11177

fixed bug that drove all into panic

41 lines of code changed in 1 file:

nfijg 2021-05-22 14:59 Rev.: 11176

fixed MEM/MOD bug in mutations

55 lines of code changed in 4 files:

nfijg 2021-05-22 12:56 Rev.: 11175

reduced overlap between icommonfish and files i100 and i101

232 lines of code changed in 3 files:

nfijg 2021-05-21 09:40 Rev.: 11174

converted all array numbers to parameters in iCommonfish

552 lines of code changed in 4 files:

nfijg 2021-05-19 11:53 Rev.: 11173

first prt of implementing GOS = 3, panic

336 lines of code changed in 3 files:

hje044 2021-05-18 10:55 Rev.: 11172

Added many comments for readability, and now scales recruitment to TargetInd (tentatively)

1653 lines of code changed in 2 files:

nfijg 2021-05-17 18:30 Rev.: 11171

expanded philosophy of model

126 lines of code changed in 3 files:

nfijg 2021-05-15 16:14 Rev.: 11170

new parameter RISKCAP and other changes in gain and risk

78 lines of code changed in 3 files:

aru047 2021-05-14 15:06 Rev.: 11169

200 000 generations long

1408 lines of code changed in 6 files:

nfijg 2021-05-12 12:12 Rev.: 11168

corrected print "% Afraid" in file 11

2 lines of code changed in 1 file:

sbu062 2021-05-12 11:33 Rev.: 11167

use tortoiseproc.exe api program for tools

6 lines of code changed in 1 file:

sbu062 2021-05-12 11:04 Rev.: 11166

delete energy branch, synced and merged to mmain STOMACH

0 lines of code changed in 8 files:

sbu062 2021-05-12 11:00 Rev.: 11165

merged r11163 from **STOMACH_energ_dev**, there are too many changes in the energetics branch

389 lines of code changed in 8 files:

sbu062 2021-05-12 10:45 Rev.: 11164

UPGRADE with INTERFACE CHANGE: merged r11163, got rid of `double` and implemented arbitrary vector default values
NOTE: interface change suffix `_D` should use `_R` (for real), `HRP` real uses `_HR`

137 lines of code changed in 2 files:

sbu062 2021-05-12 10:30 Rev.: 11163

CHANGE INTERFACE: got rid of `double precision` in `PARSETEXT`
WARNING: procedure names were changed: real type `SRP` reals now have suffix `_R` such as (PTREAD_R),no `_D` now;
Very high `HRP` real type procedure implemented only for scalar (PTREAD) variant

30 lines of code changed in 2 files:

sbu062 2021-05-12 09:56 Rev.: 11162

setting default GUI DISLIN parameters from constants `DISLIN_GUI_WINDOW_ASPECT_PLOTTING_DEF`, `DISLIN_GUI_WINDOW_PAGESIZE_PLOTTING_DEF` and `DISLIN_GUI_WINDOW_WIDTH_PLOTTING_DEF`
This allows empty configuration entries for `gui_plot_window_page_size`, `gui_plot_area_width` and `gui_plot_area_aspect`

12 lines of code changed in 3 files:

sbu062 2021-05-12 09:31 Rev.: 11161

implemented vector default parameters for real and logical versions as in r11160 for integer

110 lines of code changed in 2 files:

sbu062 2021-05-12 09:11 Rev.: 11160

vector parameter in parameter file can be absent, with default vector supplied
This required two versions of (PTREAD_IVEC) with generic interface,
note that vector default version uses non-optional argument vector
to guard against ambiguous interface

56 lines of code changed in 3 files:

sbu062 2021-05-11 14:35 Rev.: 11159

send model params to stdout, yes button

6 lines of code changed in 1 file:

sbu062 2021-05-11 13:09 Rev.: 11158

reformat only

5 lines of code changed in 1 file:

sbu062 2021-05-11 13:02 Rev.: 11157

added body_mass to GUI table `idx_table_params`

85 lines of code changed in 1 file:

sbu062 2021-05-10 19:50 Rev.: 11156

show parameters add body mass and energy

0 lines of code changed in 4 files:

sbu062 2021-05-10 19:37 Rev.: 11155

debug code removed

0 lines of code changed in 1 file:

sbu062 2021-05-10 13:31 Rev.: 11154

run target with xmpp reporting

3 lines of code changed in 1 file:

sbu062 2021-05-10 09:36 Rev.: 11153

merged Jarl's branch r11150

151 lines of code changed in 2 files:

sbu062 2021-05-07 12:12 Rev.: 11152

debug: get rid of debug prints

749 lines of code changed in 1 file:

sbu062 2021-05-07 12:08 Rev.: 11151

debug: debug version with `print` to be disabled: runs to the end without crashing with `-init=arrays,snan`

759 lines of code changed in 1 file:

nfijg 2021-05-07 11:45 Rev.: 11150

SIMNeurobiologicalState

84 lines of code changed in 2 files:

tla051 2021-05-07 07:19

upload

12254 lines of code changed in 11 files:

tla051 2021-05-07 07:18 Rev.: 11138

delete and replace to fix broken link

0 lines of code changed in 10 files:

aru047 2021-05-05 20:15 Rev.: 11137

2548 lines of code changed in 4 files:

nfijg 2021-05-05 17:14 Rev.: 11136

initiated arrays in SRdiploideggs14

67 lines of code changed in 1 file:

sbu062 2021-05-05 16:16 Rev.: 11135

fix crushes: initialize arrays, ln 5427 still wrong format

3 lines of code changed in 1 file:

sbu062 2021-05-05 13:44 Rev.: 11134

merged with jarl r11133

19 lines of code changed in 3 files:

nfijg 2021-05-05 13:38 Rev.: 11133

corrected format 1837

4 lines of code changed in 1 file:

nfijg 2021-05-05 13:14 Rev.: 11132

neutralized memory

15 lines of code changed in 3 files:

sbu062 2021-05-05 10:54 Rev.: 11130

merged r11129 from jarl
branch URL: https://tegsvn.uib.no/svn/tegsvn/branches/jarl/HED26

373 lines of code changed in 6 files:

nfijg 2021-05-05 08:22 Rev.: 11129

renamed Commonfish_SNG.txt to iCommonfish_SNG.txt

373 lines of code changed in 5 files:

sbu062 2021-05-04 12:14 Rev.: 11128

delete other data files

1 lines of code changed in 1 file:

sbu062 2021-05-04 11:40 Rev.: 11127

merged from main Jarl's branch atv r11113

0 lines of code changed in 4 files:

sbu062 2021-05-04 11:38 Rev.: 11126

delete data directories on clean

1 lines of code changed in 1 file:

sbu062 2021-05-01 08:15 Rev.: 11125

added older versions of figs

10077 lines of code changed in 4 files:

sbu062 2021-05-01 05:59 Rev.: 11124

v2.0: subtitle fix

16 lines of code changed in 1 file:

sbu062 2021-05-01 05:40 Rev.: 11123

v2.0: small change in conclusion

12 lines of code changed in 1 file:

sbu062 2021-05-01 05:36 Rev.: 11122

v2.0: abstract adapted

55 lines of code changed in 1 file:

April 2021 »

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