April 2018 Commit Log

Number of Commits:

50

Number of Active Developers:

3

cje012 2018-04-27 13:58 #50 Rev.: 7038

Minor changes to comments.

23 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+23 -7)

cje012 2018-04-19 10:00 #49 Rev.: 7037

Fixed error.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+1 -1)

cje012 2018-04-19 09:34 #48 Rev.: 7036

Fixed error in autocorrelatedE. phi was not saved to lastphi in while loop.

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+3)

cje012 2018-04-19 08:38 #47 Rev.: 7035

Changed phi = alpha*lastphi + sqrt(1._RP-alpha)*rnorm() into phi = alpha*lastphi + sqrt(1._RP-alpha**2._RP)*rnorm() as the old way of calculating phi did not give a standard normal distribution.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+1 -1)

cje012 2018-04-19 08:37 #46 Rev.: 7034

Added new parameter SMR_coeff_weight used for calculations of SMR_coeff.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+2 -1)

cje012 2018-04-19 08:36 #45 Rev.: 7033

Weight used for calculating SMR_coeff is now a parameter names SMR_coeff_weight.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

sbu062 2018-04-12 21:21 #44 Rev.: 7032

web: fif F8 link, even wider plots

9 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (+9 -8)

sbu062 2018-04-12 21:18 #43 Rev.: 7031

web: wider plots

7 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (+7 -7)

sbu062 2018-04-12 21:16 #42 Rev.: 7030

web: further minor

2 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (+2 -1)

sbu062 2018-04-12 21:13 #41 Rev.: 7029

web: make architecture go first on main page

3 lines of code changed in 2 files:

• trunk/AHAWEB/content: cognitive-architecture.rst (+2 -2), example-results-simulation-r1.rst (+1 -2)

sbu062 2018-04-12 21:11 #40 Rev.: 7028

web: doi badge doesn't render

1 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (+1 -2)

sbu062 2018-04-12 21:08 #39 Rev.: 7027

web: small fix

18 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (+18)

sbu062 2018-04-12 21:03 #38 Rev.: 7026

web: add results for R1

184 lines of code changed in 1 file:

• trunk/AHAWEB/content: example-results-simulation-r1.rst (new 184)

sbu062 2018-04-12 21:01 #37

doc: copy plots

8411 lines of code changed in 7 files:

• trunk/AHAWEB/content/images: plot-r1-02.svg (new 1068), plot-r1-03.svg (new 1116), plot-r1-04.svg (new 1338), plot-r1-05.svg (new 1176), plot-r1-06.svg (new 1320), plot-r1-07.svg (new 1189), plot-r1-08.svg (new 1204)

sbu062 2018-04-12 21:01 #36 Rev.: 7018

doc: copy plots

1341 lines of code changed in 1 file:

• trunk/AHAWEB/content/images: plot-r1-01.svg (new 1341)

sbu062 2018-04-12 20:40 #35 Rev.: 7017

doc: header fixed

13 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.adoc (+13 -2)

sbu062 2018-04-12 20:38 #34 Rev.: 7016

doc: minor correction results

22 lines of code changed in 2 files:

• tags/AHA_R/R1/simulation: RESULTS.adoc (+11 -6), RESULTS.md (+11 -6)

sbu062 2018-04-11 12:14 #33 Rev.: 7015

web: update hedtools downloads to latest 1.1 r7014

2 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: hedtools.adoc (+2 -2)

sbu062 2018-04-10 20:43 #32 Rev.: 7014

doc: enable special magical section title 'References' that issued document build bug: requires explicit section template [sect1]

3 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.adoc (+3 -2)

sbu062 2018-04-10 13:49 #31 Rev.: 7013

doc: asciidoc version

186 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.adoc (new 186)

sbu062 2018-04-10 08:54 #30 Rev.: 7012

web: update repo addresess, add github

4 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: hedtools.adoc (+4 -2)

sbu062 2018-04-10 08:48 #29 Rev.: 7011

doc: fix path in getting started

4 lines of code changed in 1 file:

• tags/AHA_R/R1: README.md (+4 -4)

sbu062 2018-04-10 08:41 #28 Rev.: 7010

doc: update repo addresses to point to open repos for R1

5 lines of code changed in 1 file:

• tags/AHA_R/R1: README.md (+5 -5)

sbu062 2018-04-09 22:06 #27 Rev.: 7009

web: rewrite

16 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+16 -19)

sbu062 2018-04-09 21:59 #26 Rev.: 7008

web: small fix

3 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+3 -3)

sbu062 2018-04-09 21:43 #25 Rev.: 7007

web: doi badge below

4 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+4 -1)

sbu062 2018-04-09 21:42 #24 Rev.: 7006

web: fix format

12 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+12 -12)

sbu062 2018-04-09 21:41 #23 Rev.: 7005

web: more description for R1

12 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+12 -1)

sbu062 2018-04-09 21:31 #22 Rev.: 7004

web: added doi badge for R1

6 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+6)

sbu062 2018-04-09 21:10 #21 Rev.: 7003

doc: typo

1 lines of code changed in 1 file:

• tags/AHA_R/R1: LICENSE.md (+1 -1)

sbu062 2018-04-09 21:08 #20 Rev.: 7002

doc: added gpl v3

8 lines of code changed in 1 file:

• tags/AHA_R/R1: LICENSE.md (new 8)

sbu062 2018-04-09 20:51 #19 Rev.: 7001

doc: updated bitbucket and github repo addresses for R1

0 lines of code changed in 2 files:

• tags/AHA_R/R1: m_common.f90 (new)

sbu062 2018-04-09 17:58 #18 Rev.: 7000

web: add open repos at bitbucket and github

4 lines of code changed in 1 file:

• trunk/AHAWEB/content/pages: code.md (+4 -2)

sbu062 2018-04-09 17:41 #17 Rev.: 6999

doc: added ref to github repo mirror

0 lines of code changed in 2 files:

• tags/AHA_R/R1: README.md (new)

sbu062 2018-04-09 17:21 #16 Rev.: 6998

doc: spell

3 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.md (+3 -3)

sbu062 2018-04-09 17:12 #15 Rev.: 6997

doc: small changes

15 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.md (+15 -10)

sbu062 2018-04-09 16:33 #14 Rev.: 6996

doc: results plots 700 px width

49 lines of code changed in 7 files:

• tags/AHA_R/R1/simulation/plots: plot-r1-01.svg (+7 -7), plot-r1-02.svg (+7 -7), plot-r1-03.svg (+7 -7), plot-r1-04.svg (+7 -7), plot-r1-05.svg (+7 -7), plot-r1-07.svg (+7 -7), plot-r1-08.svg (+7 -7)

sbu062 2018-04-09 16:02 #13 Rev.: 6995

doc: results plots 500 px width

9744 lines of code changed in 8 files:

• tags/AHA_R/R1/simulation/plots: plot-r1-01.svg (+1340 -283), plot-r1-02.svg (+1067 -234), plot-r1-03.svg (+1115 -245), plot-r1-04.svg (+1337 -283), plot-r1-05.svg (+1175 -256), plot-r1-06.svg (+1319 -280), plot-r1-07.svg (+1188 -253), plot-r1-08.svg (+1203 -255)

sbu062 2018-04-09 16:01 #12 Rev.: 6994

doc: name of reference model R1, added simulation results section

0 lines of code changed in 2 files:

• tags/AHA_R/R1: Doxyfile (new)

sbu062 2018-04-09 15:52 #11 Rev.: 6993

doc: number figs

7 lines of code changed in 1 file:

• tags/AHA_R/R1/simulation: RESULTS.md (+7 -7)

sbu062 2018-04-09 15:40 #10 Rev.: 6992

doc: added brief results of a simulation for the reference model R1

2256 lines of code changed in 9 files:

• tags/AHA_R/R1/simulation: RESULTS.md (new 159)
• tags/AHA_R/R1/simulation/plots: plot-r1-01.svg (new 284), plot-r1-02.svg (new 235), plot-r1-03.svg (new 246), plot-r1-04.svg (new 284), plot-r1-05.svg (new 257), plot-r1-06.svg (new 281), plot-r1-07.svg (new 254), plot-r1-08.svg (new 256)

sbu062 2018-04-06 15:08 #9 Rev.: 6989

backported r6987-6988: fixed broken tests after r6909, was double main due to double calling of $DRV

16 lines of code changed in 4 files:

• branches/budaev/HEDG2_01: Makefile (+4 -4)
• branches/budaev/HEDG2_02: Makefile (+4 -4)
• branches/budaev/HEDG2_03: Makefile (+4 -4)
• branches/budaev/HEDG2_05: Makefile (+4 -4)

sbu062 2018-04-06 14:57 #8 Rev.: 6988

minor, white space only

2 lines of code changed in 1 file:

• branches/budaev/HEDG2_04: Makefile (+2 -2)

sbu062 2018-04-06 14:56 #7 Rev.: 6987

fixed broken tests after r6909, was double main due to double calling of $DRV

4 lines of code changed in 1 file:

• branches/budaev/HEDG2_04: Makefile (+4 -4)

sbu062 2018-04-06 11:30 #6 Rev.: 6986

delete executable dependency from zipdata target to avoid rebuilding

5 lines of code changed in 5 files:

• branches/budaev/HEDG2_01: Makefile (+1 -1)
• branches/budaev/HEDG2_02: Makefile (+1 -1)
• branches/budaev/HEDG2_03: Makefile (+1 -1)
• branches/budaev/HEDG2_04: Makefile (+1 -1)
• branches/budaev/HEDG2_05: Makefile (+1 -1)

tla051 2018-04-05 06:17 #5

before major changes to shift all environment calculations into a subroutine

438 lines of code changed in 2 files:

• mesopelagic_latitude/mesopelagic_barrier/trunk: mesopelagic_barrier.f90 (+438 -406), subroutine_environment.f90 (new)

cje012 2018-04-04 07:08 #4 Rev.: 6983

Added break to do while loop in the autocorrelatedE() function, to avoid infinite loops when AutoCorr/alpha == 1.

4 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+4 -1)

cje012 2018-04-04 07:04 #3 Rev.: 6982

Minor update.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+2 -2)

cje012 2018-04-03 09:52 #2 Rev.: 6981

Replaced calculations for initializing ValueOfE_real backward with autocorrelatedE() function where AutoCorr =1 so that lastE=E_real and lastphi=phi¸so therefor the ValueOfE for E_real is returned. See also comment for last change.

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+3 -2)

cje012 2018-04-03 09:47 #1 Rev.: 6980

Replaced the calculations for ValueOfE in backwards with the autocorrelatedE() function with AutoCorr=1. this means that lastE=E and lastphi=phi so the ValueOfE for E_cat is therefore returned from the function. This is done so that no calculations in the main code have to be changed if there are done any changes to the autocorrelatedE() function in the future.

4 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+4 -3)

March 2018 »