November 2018 Commit Log

Number of Commits:

90

Number of Active Developers:

3

sbu062 2018-11-26 12:51 #90 Rev.: 7562

added modification of n block test program for testing standard builtin random_number procedure, with simple non-parallel seed routine from HEDTOOLS

165 lines of code changed in 1 file:

• branches/budaev/var/tools: nbtest_rnd.f (new 165)

sbu062 2018-11-24 12:36 #89 Rev.: 7561

added random number codes from netlib

4206 lines of code changed in 6 files:

• branches/budaev/var/tools: nblocktest.f (new 162), randgen.f (new 748), randgen.txt (new 405), random.f90 (new 1595), ziggurat.f90 (new 333), zufall.f (new 963)

sbu062 2018-11-21 22:16 #88 Rev.: 7560

FEE v.2.9f, additional small fixes

8 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+8 -6)

sbu062 2018-11-21 15:02 #87 Rev.: 7559

FEE v2.9f, deleted reference management fields from the text, in ODT

168 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+167 -170)

sbu062 2018-11-21 14:40 #86 Rev.: 7558

FEE v2.9, reformatted text as required by authors guide for FEE, conflict of interest and other mandatory sections added from FEE template

35 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+34 -21)

sbu062 2018-11-21 13:20 #85 Rev.: 7557

FEE v2.8, checked and fixed all remaining references

45 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+44 -42)

sbu062 2018-11-20 14:03 #84 Rev.: 7556

system: fixed misleading comments

3 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: dump.tegsvn.bat (+3 -2)

sbu062 2018-11-20 13:50 #83 Rev.: 7555

system: added check md5 command

5 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: dump.tegsvn.bat (+5 -3)

sbu062 2018-11-20 13:42 #82 Rev.: 7554

sstem: added TEGSVN backup script for Windows, will save dumps on O disk for user backup

75 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: dump.tegsvn.bat (new 75)

sbu062 2018-11-20 10:08 #81 Rev.: 7553

a simple batch script to produce date label for files ala date+ format in Linux

22 lines of code changed in 1 file:

• branches/budaev/var/tools: getdate.bat (new 22)

sbu062 2018-11-19 20:57 #80 Rev.: 7552

FEE v2.7, small forgotten fix in final agreed revision

5 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+5 -2)

sbu062 2018-11-19 20:46 #79 Rev.: 7551

FEE v2.7, final agreed version

19 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+19 -21)

sbu062 2018-11-19 20:38 #78 Rev.: 7550

FEE 2.7, Sigrunn 's small fixes

28 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+28 -29)

sbu062 2018-11-19 12:43 #77 Rev.: 7549

system: have to use the same config name, otherwise daemon starts in a different more and user parameters cannot be changed, so needed to move and rename config files to normal name

11 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: create_user.sh (+11 -2)

sbu062 2018-11-19 12:12 #76 Rev.: 7548

system: more info on quick start

15 lines of code changed in 2 files:

• trunk/SVNSERVER: README.html (+5 -2), README.md (+10 -2)

sbu062 2018-11-19 11:39 #75 Rev.: 7547

FEE 2.7, snall fixes missed before

9 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+9 -9)

sbu062 2018-11-19 10:51 #74 Rev.: 7546

FEE 2.7, incorporated Jarl's and Marc's changes into the main text

186 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+185 -179)

sbu062 2018-11-19 10:41 #73 Rev.: 7545

FEE 2.6jg, Jarl's changes plus Marc's comment from email on new paragraph

241 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+241 -231)

sbu062 2018-11-17 14:02 #72 Rev.: 7544

small reorganize

797 lines of code changed in 2 files:

• branches/budaev/var/env_var: env_var_mod.f90 (del)
• branches/budaev/var/tools: ParseText.F90 (new 797)

sbu062 2018-11-16 22:51 #71 Rev.: 7543

web: deleted user creation details as theis is now done by script, all the details moved to comments within the create_user.sh script

20 lines of code changed in 2 files:

• trunk/SVNSERVER: README.html (+7 -39), README.md (+13 -82)

sbu062 2018-11-16 22:45 #70 Rev.: 7542

system: added doc on user management and common authentication in svn and xmpp into the user create script

100 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: create_user.sh (+100)

sbu062 2018-11-16 20:18 #69 Rev.: 7541

web: fix readme

0 lines of code changed in 1 file:

• trunk/SVNSERVER: README.html (-3)

sbu062 2018-11-16 20:17 #68 Rev.: 7540

system: deleted dangerous command from readme, it is never used

9 lines of code changed in 2 files:

• trunk/SVNSERVER: README.html (+3 -1), README.md (+6 -10)

sbu062 2018-11-16 20:12 #67 Rev.: 7539

system: fix pass

2 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: create_user.sh (+2 -2)

sbu062 2018-11-16 20:11 #66 Rev.: 7538

system: small beautifying

10 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: create_user.sh (+10 -9)

sbu062 2018-11-16 20:01 #65 Rev.: 7537

system: added create user script

93 lines of code changed in 1 file:

• trunk/SVNSERVER/bin: create_user.sh (new 93)

sbu062 2018-11-16 17:20 #64 Rev.: 7536

web: small aestetic fixes

3 lines of code changed in 1 file:

• trunk/SVNSERVER/root_www_html: index.md (+3 -2)

sbu062 2018-11-16 11:31 #63 Rev.: 7535

web: landing page, small restyle, added downloads

5 lines of code changed in 1 file:

• trunk/SVNSERVER/root_www_html: index.md (+5 -8)

sbu062 2018-11-15 10:45 #62 Rev.: 7534

web: enable webdav access to downloads area, requires module dav_fs: a2enmod dav_fs

1 lines of code changed in 1 file:

• trunk/SVNSERVER/config/apache2/sites-enabled: default-ssl.conf (+1)

sbu062 2018-11-13 19:29 #61 Rev.: 7533

FEE 2.6, small fixes, fixed camelcase in refs

19 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+19 -19)

sbu062 2018-11-13 16:11 #60 Rev.: 7532

FEE 2.6, trimmed references from paper text reading (paper-frontiers-ecoevo-v2.5-marked-20181113153855.pdf), first round of refs reduction, removed those that occur once

237 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+236 -483)

sbu062 2018-11-12 12:51 #59 Rev.: 7531

typo fix

1 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+1 -1)

sbu062 2018-11-12 12:48 #58 Rev.: 7530

visrange: renamed simple test for name consistency with other tests

337 lines of code changed in 6 files:

• tags/VISRANGE/1.1: Makefile (+1 -1), README.md (+4 -4), test_simple.f90 (new 167), test_simple_hrp.f90 (new 165), vr_test_simple.f90 (del), vr_test_simple_hrp.f90 (del)

sbu062 2018-11-12 12:36 #57 Rev.: 7529

tetitle

1 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+1 -1)

sbu062 2018-11-12 12:34 #56 Rev.: 7528

visrange: doc interferes with hedtools doc path that is in search path and is checked first, renamed target to docs that has no corresponding path

2 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+2 -2)

sbu062 2018-11-12 12:20 #55 Rev.: 7527

visrange: we don't need optimizations for damo

4 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+4 -4)

sbu062 2018-11-12 12:14 #54 Rev.: 7526

visrange: deleted obsolete targets

17 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+17 -35)

sbu062 2018-11-12 11:51 #53 Rev.: 7525

visrange: added example call for getr() in R in simple section

7 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+7 -5)

sbu062 2018-11-12 11:44 #52 Rev.: 7524

visrange: fixed makefile, small updates for readme

61 lines of code changed in 2 files:

• tags/VISRANGE/1.1: Makefile (+6 -5), README.md (+55 -24)

sbu062 2018-11-12 11:23 #51 Rev.: 7523

visrange: fixed R library build path on Windows

1 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+1 -1)

sbu062 2018-11-12 09:39 #50 Rev.: 7522

small change text

1 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+1 -1)

sbu062 2018-11-12 09:36 #49 Rev.: 7521

Fixed Makefile for visrange, also for R, see also r7519

5 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+5 -21)

sbu062 2018-11-12 09:30 #48 Rev.: 7520

deleted utf crap symbols from file

11 lines of code changed in 2 files:

• tags/VISRANGE/1.1: Makefile (+8 -16), README.md (+3 -3)

sbu062 2018-11-10 15:04 #47 Rev.: 7519

refprmat text

9 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+9 -6)

sbu062 2018-11-10 15:02 #46 Rev.: 7518

visrange: update readme, porting notes on R interface

7 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+7)

sbu062 2018-11-10 14:23 #45 Rev.: 7517

visrange: delete windows dll on distclean

1 lines of code changed in 1 file:

• tags/VISRANGE/1.1: Makefile (+1 -1)

sbu062 2018-11-10 14:13 #44 Rev.: 7516

visrange: separate compile and build work better on Windows

10 lines of code changed in 2 files:

• tags/VISRANGE/1.1: getr.R (+5 -6), test_plot_r.R (+5 -8)

sbu062 2018-11-10 13:48 #43 Rev.: 7515

visrange: added windows os path for R library

15 lines of code changed in 2 files:

• tags/VISRANGE/1.1: getr.R (+7 -2), test_plot_r.R (+8 -3)

sbu062 2018-11-10 13:18 #42 Rev.: 7514

visrange: user-adjustable path to R library for building shared library

18 lines of code changed in 2 files:

• tags/VISRANGE/1.1: getr.R (+9 -2), test_plot_r.R (+9 -2)

sbu062 2018-11-10 09:36 #41 Rev.: 7513

visrange: better plot

3 lines of code changed in 1 file:

• tags/VISRANGE/1.1: test_plot_r.R (+3 -1)

sbu062 2018-11-10 09:29 #40 Rev.: 7512

visrange: added build function in R

6 lines of code changed in 1 file:

• tags/VISRANGE/1.1: getr.R (+6)

sbu062 2018-11-10 08:58 #39 Rev.: 7511

unimportant reformat

2 lines of code changed in 1 file:

• tags/VISRANGE/1.1: test_plot_r.R (+2 -2)

sbu062 2018-11-09 23:17 #38 Rev.: 7510

visrange: build fortran function for R demo

14 lines of code changed in 1 file:

• tags/VISRANGE/1.1: test_plot_r.R (+14 -5)

sbu062 2018-11-09 23:01 #37 Rev.: 7509

visrange: added R test demo the same as in fortran tests, plotting

91 lines of code changed in 1 file:

• tags/VISRANGE/1.1: test_plot_r.R (new 91)

sbu062 2018-11-09 21:41 #36 Rev.: 7508

delete .so shared library on distclean

0 lines of code changed in 2 files:

• tags/VISRANGE/1.1: Makefile (new)

sbu062 2018-11-09 19:54 #35 Rev.: 7507

visrange: fix precision after conversion of SRP ty kind 8

0 lines of code changed in 2 files:

• tags/VISRANGE/1.1: vr_test_simple.f90 (changed)

sbu062 2018-11-09 19:42 #34 Rev.: 7506

visrange: fix formatting

13 lines of code changed in 1 file:

• tags/VISRANGE/1.1: README.md (+13 -12)

sbu062 2018-11-09 19:38 #33 Rev.: 7505

visrange: deleted development branch

0 lines of code changed in 6 files:

• branches/budaev/VISRANGE: README.md (del), getr.R (del), visrange.f90 (del), visrange_if.f90 (del), vr_test_simple.f90 (del), vr_test_simple_hrp.f90 (del)

sbu062 2018-11-09 19:37 #32 Rev.: 7504

visrange: merged latestr doc on R interface

0 lines of code changed in 2 files:

• tags/VISRANGE/1.1: README.md (new)

sbu062 2018-11-09 19:36 #31 Rev.: 7503

visrange: added info on R interface and use

0 lines of code changed in 2 files:

• branches/budaev/VISRANGE: README.md (changed)

sbu062 2018-11-09 18:53 #30 Rev.: 7502

visrange: merged R interface

105 lines of code changed in 4 files:

• tags/VISRANGE/1.1: getr.R (new 29), visrange.f90 (new), visrange_if.f90 (new 76)

sbu062 2018-11-09 18:47 #29 Rev.: 7501

visrange: added R wrapper function

30 lines of code changed in 2 files:

• branches/budaev/VISRANGE: getr.R (new 29), visrange.f90 (+1 -1)

sbu062 2018-11-09 18:10 #28 Rev.: 7500

visrange: added R interface wrapper

0 lines of code changed in 1 file:

• branches/budaev/VISRANGE: visrange_if.f90 (new)

sbu062 2018-11-09 13:28 #27 Rev.: 7498

visrange: added a SRP version of the simple test, it should be the main simple test

0 lines of code changed in 1 file:

• branches/budaev/VISRANGE: vr_test_simple.f90 (new)

sbu062 2018-11-09 13:23 #26 Rev.: 7497

visrange: original simple test was in hrp, now it is moved to a separate hrp-test

0 lines of code changed in 2 files:

• branches/budaev/VISRANGE: vr_test_simple.f90 (del), vr_test_simple_hrp.f90 (new)

sbu062 2018-11-09 13:16 #25 Rev.: 7496

visrange: added wrapper and generic interface to (srgetr), so it can be used both in HRP and SRP real precision models

0 lines of code changed in 2 files:

• branches/budaev/VISRANGE: visrange.f90 (new)

sbu062 2018-11-09 12:34 #24 Rev.: 7495

visrange is now in tags, current latest rev. v.1, r7269

0 lines of code changed in 8 files:

• trunk/VISRANGE: Makefile (del), README.md (del), mod_ogpf.f90 (del), test_plot_ogpf.f90 (del), test_plot_pgplot.f90 (del), visrange.f90 (del), visrange_old.f90 (del), vr_test_simple.f90 (del)

sbu062 2018-11-09 12:33 #23 Rev.: 7494

visrange: merged latest changes made in tags 1.0

0 lines of code changed in 1 file:

• trunk/VISRANGE: vr_test_simple.f90 (new)

sbu062 2018-11-09 12:32 #22 Rev.: 7493

merged latest changes from v1.0

0 lines of code changed in 1 file:

• branches/budaev/VISRANGE: vr_test_simple.f90 (new)

sbu062 2018-11-08 20:50 #21 Rev.: 7491

FEE v2.5, fix abstract mistypes

22 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+22 -23)

sbu062 2018-11-08 12:37 #20 Rev.: 7490

FEE v2.5, incorporated legends into main text

39 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+39 -1)

sbu062 2018-11-08 11:57 #19 Rev.: 7489

FEE v2.5, new abstract combining Marc's and old

72 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+72 -32)

sbu062 2018-11-07 16:00 #18 Rev.: 7488

FEE v2.5, started to integrate Marc Mangel latest comments

159 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+158 -222)

sbu062 2018-11-07 09:44 #17 Rev.: 7487

FEE: Marc Mangel, second round of changes on v2.4, paper-frontiers-ecoevo-v2.4_MM.docx

390 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+390 -366)

sbu062 2018-11-07 09:43 #16 Rev.: 7486

cancel r7485

367 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+366 -390)

sbu062 2018-11-07 09:40 #15 Rev.: 7485

FEE: Marc Mangel, second round of changes on v2.4

391 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+390 -366)

sbu062 2018-11-06 11:22 #14 Rev.: 7484

web: configuration for private section on tegsvn web site

10 lines of code changed in 1 file:

• trunk/SVNSERVER/config/apache2/sites-enabled: default-ssl.conf (+10 -2)

sbu062 2018-11-06 10:49 #13 Rev.: 7483

web: configuration for downloads section on tegsvn web site

9 lines of code changed in 1 file:

• trunk/SVNSERVER/config/apache2/sites-enabled: default-ssl.conf (+9)

sbu062 2018-11-06 10:26 #12 Rev.: 7482

FEEv2.4, a couple of small wording changes

11 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+11 -11)

sbu062 2018-11-02 12:15 #11 Rev.: 7481

FEEv2.4, small changes, added refs on planning

17 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+17 -9)

jwe041 2018-11-02 08:50 #10 Rev.: 7480

Change to Reserve Cat when saved in Ind

Starvation limit: no reduction in survival when low reserves

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk_mortality: Hormones_v2.f90 (+3 -3)

cje012 2018-11-02 08:35 #9 Rev.: 7479

Fixed error in how R_cat is saved to the ind array.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/testingbranch: Hormones_v2.f90 (+1 -1)

cje012 2018-11-02 08:27 #8

Fixed error in how R_cat is saved to the ind array.

2 lines of code changed in 2 files:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+1 -1)
• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

cje012 2018-11-02 07:58 #7 Rev.: 7476

Commented out lines about starvation_limit as they cause problems.

4 lines of code changed in 1 file:

• hormones_v2/branches_camilla/testingbranch: Hormones_v2.f90 (+4 -4)

cje012 2018-11-02 07:47 #6 Rev.: 7475

Commented out lines about starvation_limit as they cause problems.

4 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+4 -4)

cje012 2018-11-02 07:41 #5 Rev.: 7474

Commented out lines about starvation_limit as they cause problems.

4 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+4 -4)

sbu062 2018-11-01 14:02 #4 Rev.: 7473

v2.4, some minor changes, more on planning

67 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+67 -53)

cje012 2018-11-01 13:43 #3 Rev.: 7472

Added title with folder path and individual number to all plots, as well as some bugfixes.

5 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: individual_plot.r (+5 -2)

cje012 2018-11-01 13:17 #2 Rev.: 7471

Changed the folder structure in the output folder, to make it easier to plot several individuals after each other

6 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: individual_plot.r (+6 -2)

cje012 2018-11-01 13:04 #1 Rev.: 7470

R script for plotting one individual with the same movement through the environment to compare it without parasites, to the same individual with differering parasite levels.

220 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: individual_plot.r (new 220)

October 2018 »