new line for easier modification of debug code, addition of new indicators
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conemu starts from default path, unusable in tools menu
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code::blocks config files for Windows
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Coded together. Got help from Sergey with passing type structure to functions, now at least one is subroutine. Made ind allocatable.
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debugged and tidied up the code. started making a function for trait inheritance.
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v2.12.refs: small fixes text
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v2.12.refs: check refs and formats
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v2.12.refs: figure legend, small fix
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v2.12.refs: trimmed refs to end
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v2.12.refs: started trimming references
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Coded together. Added function for normalizing mating success intervals. Fixed many small things relating to the type construct. Attempted to sort offpsring by males and females into next-generation ind array.
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coded inheritance
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debugging
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v2.12: added Mendl, and small changes
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v2.12: refs after duplicate find in mandeley
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created individuals as a type and changed the syntax accordingly
took parts of the old code and translated it into the new structure
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v2.12: shorter phrase
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v2.12: need ref to Fanselow
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v2.11: Christian resigned from coauthors, integrated Tore's notes
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Coded together, mostly discussing. Going back to rp precision.
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extended output for (test_run)
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Coded togheter, made structure for ind() overview array
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Coded together. Changed to double precision.
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coded function for female reproduction -> not checked for bugs
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2.10: small changes, defined "subjective"
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v2.10: typo
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v2.10: incorporated Tore's and Jarl's comments
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v2.9.: small changes, distributing v2.9
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v2.9: small additional changes, JG's suggested authors order
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Minor change
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v2.9: JG's abbreviations back in framework section
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v2.9: more clear "original" outline, need whole reading yet
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added comments
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comment on absorption only
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Coded together. Checked male mating function. Small changes here and there for nice flows in and out of functions. Reformatted parameters part for environment and mating.
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midgut absorption now starts only after `Global_Digestion_Delay` delay
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must be object-specific midgut volume, not global parameter
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202 lines of code changed in 2 files:
v2.8, additional small changes
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v2.8, integrated comments by Sigrunn and Tore, Hoffmeyer' biosemiotics not inserted so far, abstract unchanged for latest versions
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these are unused
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added admin group, trunk and tags are now restricted writing
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readded qsort
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Sorting algorithm, how to use at line 942?
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Still having sorting trouble
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added comments on build flags
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typo
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same build options work for gfortran on all platforms; added comments
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branch long obsolete
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fix Windows build options
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added digestion delay in midgut, parameter added
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fix global var case
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`Z7` or `Zi` equivalent to `-g` on Windows intel ifort
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add **docs** doxygen target, latex output disabled
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doxy comments fix
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pdb delete on windows
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write arguments one on a line easier to count and control
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extra checks make nuisance in ifort at `DEBUG` build
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long integer version of (PTread) must have `li` suffix
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GUI type is set by the config file, mandatory; GUI by environment variable now takes priority
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disabled optional parameters for logical PTread function, use types from REALCALC module
- absent logical config value produces cryptic errors on ifort with debug symbols enabled
- now works on all compilers
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only import `c_int64_t` type
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makefile adapted for cross-platform build with ifort and gfortran
- tested on Linux
- build fails on gfortran 5 (winXP)
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- read lat/lon from csv
- output daily cum ambient light
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use `Global_Absorption_Ratio`
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added parameter for absorption ratio
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comments fix
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doxygen comments done on stomach and midgut processors
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access rights fix
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add CSV IO to repository
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added config for path-based access control, see `svn_authz`
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backup before experimenting with read.csv
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simplify prototype with associate
- fixed value `0.5_SRP` is used, need a new global parameter
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prototype excretion depending on max proportion of dry volume
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debug code, better visibility
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forgotten elemental attribute
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added reference start volume component to FOOD_ITEM_EATEN class
- needed to implement excretion from gut depending on maximum absorption
- build and test ok
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add comment
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fix typo in name, rename (michaelis_menten)
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Km relative, midgut volume reduced
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debug code
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(michaelis_meneten) moved to COMMONDATA
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implemented Michaelis-Meneten adsorption dynamics in mid-gut
- parameters
- M-M in (mg_step)
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prototype Michaelis-Meneten dynamics for midgut, depending on the current total volume, relative to midgut volume
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Michaelis-Meneten equation
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obsolete code deleted
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comments only
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arbitrary tolerance parameter in (food_item_eaten_check_destruct)
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simplify code with `associate`, check for non-missing volumes
- non-mission check is superfluous because MISSING always smaller than tolerance, so far does check
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implemented and updated food volume functions for stomach and midgut
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(mg_step) public interface unification with (st_step)
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better output for midgut
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disable save stomach plot data
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simplify multi-layer object code (fish_stomach_update_step) with `associate` construct
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debugging skeleton (fish_midgut_update_from_stomach)
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fix bug in format, now works both in gfortran and ifort
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intel fortran strictly requires comma in format
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initialise is_destruct because it is counted
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rename (food_item_volume) for stomach, must have stomach in name
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(fish_midgut_update_from_stomach) midgut processing begins after `ingestion_delay` not 1
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more work on midgut
- debug code crash
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arbitrary increment in (fish_midgut_update_from_stomach)
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(fish_midgut_update_from_stomach) update n items in midgut
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small fix
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small whitespace readability
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continue skeleton (fish_midgut_update_from_stomach)
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(food_item_volume) function with zero time_in_process returns zero rather than MISSING volume, continue skeleton
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(food_item_volume) checks for zero or negative processing time, continue skeleton
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rename object component, more correct name for different compartments
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skeleton subroutine for update food items in mid-gut
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rename public intarfaces for stomach functions
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filled todo for Global_Mid_Gut_Volume
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start adding midgut parameter, `Global_Mid_Gut_Volume`
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update doxygen comments
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refactor stomach components to include *stomach* in name
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started to implement midgut
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