November 2019 Commit Log

Number of Commits:
118
Number of Active Developers:
6
sbu062 2019-11-29 11:39 Rev.: 8929

new line for easier modification of debug code, addition of new indicators

2 lines of code changed in 1 file:

sbu062 2019-11-29 10:31 Rev.: 8928

conemu starts from default path, unusable in tools menu

0 lines of code changed in 1 file:

sbu062 2019-11-29 10:30 Rev.: 8927

code::blocks config files for Windows

221 lines of code changed in 4 files:

nzlcj 2019-11-28 13:30 Rev.: 8926

Coded together. Got help from Sergey with passing type structure to functions, now at least one is subroutine. Made ind allocatable.

60 lines of code changed in 2 files:

lhi088 2019-11-28 12:04 Rev.: 8925

debugged and tidied up the code. started making a function for trait inheritance.

292 lines of code changed in 2 files:

sbu062 2019-11-27 17:02 Rev.: 8924

v2.12.refs: small fixes text

4 lines of code changed in 1 file:

sbu062 2019-11-27 11:55 Rev.: 8923

v2.12.refs: check refs and formats

22 lines of code changed in 1 file:

sbu062 2019-11-27 09:30 Rev.: 8922

v2.12.refs: figure legend, small fix

3 lines of code changed in 1 file:

sbu062 2019-11-26 22:37 Rev.: 8921

v2.12.refs: trimmed refs to end

27 lines of code changed in 1 file:

sbu062 2019-11-26 15:41 Rev.: 8920

v2.12.refs: started trimming references

17 lines of code changed in 1 file:

nzlcj 2019-11-26 14:04 Rev.: 8919

Coded together. Added function for normalizing mating success intervals. Fixed many small things relating to the type construct. Attempted to sort offpsring by males and females into next-generation ind array.

110 lines of code changed in 2 files:

lhi088 2019-11-26 12:08 Rev.: 8918

coded inheritance

42 lines of code changed in 2 files:

lhi088 2019-11-26 11:07 Rev.: 8917

debugging

53 lines of code changed in 2 files:

sbu062 2019-11-26 09:54 Rev.: 8916

v2.12: added Mendl, and small changes

7 lines of code changed in 1 file:

sbu062 2019-11-25 19:43 Rev.: 8915

v2.12: refs after duplicate find in mandeley

6 lines of code changed in 1 file:

lhi088 2019-11-25 17:24 Rev.: 8914

created individuals as a type and changed the syntax accordingly

took parts of the old code and translated it into the new structure

286 lines of code changed in 2 files:

sbu062 2019-11-25 17:10 Rev.: 8913

v2.12: shorter phrase

3 lines of code changed in 1 file:

sbu062 2019-11-25 15:16 Rev.: 8912

v2.12: need ref to Fanselow

8 lines of code changed in 2 files:

sbu062 2019-11-22 16:59 Rev.: 8911

v2.11: Christian resigned from coauthors, integrated Tore's notes

12 lines of code changed in 2 files:

nzlcj 2019-11-22 13:26 Rev.: 8910

Coded together, mostly discussing. Going back to rp precision.

16 lines of code changed in 1 file:

lhi088 2019-11-22 12:20 Rev.: 8909

26 lines of code changed in 2 files:

sbu062 2019-11-22 11:42 Rev.: 8908

extended output for (test_run)

19 lines of code changed in 1 file:

nzlcj 2019-11-22 10:49 Rev.: 8907

Coded togheter, made structure for ind() overview array

29 lines of code changed in 2 files:

lhi088 2019-11-22 09:24 Rev.: 8906

179 lines of code changed in 2 files:

nzlcj 2019-11-21 14:55 Rev.: 8905

Coded together. Changed to double precision.

51 lines of code changed in 2 files:

lhi088 2019-11-21 13:58 Rev.: 8904

coded function for female reproduction -> not checked for bugs

199 lines of code changed in 2 files:

sbu062 2019-11-21 11:20 Rev.: 8903

2.10: small changes, defined "subjective"

9 lines of code changed in 1 file:

sbu062 2019-11-20 22:05 Rev.: 8902

v2.10: typo

2 lines of code changed in 1 file:

sbu062 2019-11-20 21:56 Rev.: 8901

v2.10: incorporated Tore's and Jarl's comments

37 lines of code changed in 2 files:

sbu062 2019-11-20 15:00 Rev.: 8900

v2.9.: small changes, distributing v2.9

3 lines of code changed in 1 file:

sbu062 2019-11-20 14:19 Rev.: 8899

v2.9: small additional changes, JG's suggested authors order

8 lines of code changed in 1 file:

cje012 2019-11-20 14:17 Rev.: 8898

Minor change

115 lines of code changed in 1 file:

sbu062 2019-11-20 13:52 Rev.: 8897

v2.9: JG's abbreviations back in framework section

7 lines of code changed in 1 file:

sbu062 2019-11-20 13:32 Rev.: 8896

v2.9: more clear "original" outline, need whole reading yet

49 lines of code changed in 2 files:

sbu062 2019-11-19 19:02 Rev.: 8895

added comments

7 lines of code changed in 1 file:

sbu062 2019-11-19 18:42 Rev.: 8894

comment on absorption only

5 lines of code changed in 1 file:

nzlcj 2019-11-19 13:11 Rev.: 8893

Coded together. Checked male mating function. Small changes here and there for nice flows in and out of functions. Reformatted parameters part for environment and mating.

70 lines of code changed in 2 files:

sbu062 2019-11-19 12:35 Rev.: 8892

midgut absorption now starts only after `Global_Digestion_Delay` delay

2 lines of code changed in 1 file:

sbu062 2019-11-19 12:22 Rev.: 8891

must be object-specific midgut volume, not global parameter

5 lines of code changed in 1 file:

lhi088 2019-11-19 11:32 Rev.: 8890

202 lines of code changed in 2 files:

sbu062 2019-11-18 15:41 Rev.: 8889

v2.8, additional small changes

4 lines of code changed in 1 file:

sbu062 2019-11-18 15:19 Rev.: 8888

v2.8, integrated comments by Sigrunn and Tore, Hoffmeyer' biosemiotics not inserted so far, abstract unchanged for latest versions

41 lines of code changed in 2 files:

sbu062 2019-11-16 12:11 Rev.: 8887

these are unused

0 lines of code changed in 2 files:

sbu062 2019-11-16 09:07 Rev.: 8886

added admin group, trunk and tags are now restricted writing

12 lines of code changed in 1 file:

sbu062 2019-11-15 12:45 Rev.: 8885

readded qsort

253 lines of code changed in 1 file:

hje044 2019-11-15 11:17 Rev.: 8884

Sorting algorithm, how to use at line 942?

31 lines of code changed in 2 files:

hje044 2019-11-14 13:04 Rev.: 8883

Still having sorting trouble

36 lines of code changed in 1 file:

sbu062 2019-11-14 11:27 Rev.: 8882

added comments on build flags

4 lines of code changed in 1 file:

sbu062 2019-11-14 10:29 Rev.: 8881

typo

1 lines of code changed in 1 file:

sbu062 2019-11-14 10:27 Rev.: 8880

same build options work for gfortran on all platforms; added comments

6 lines of code changed in 1 file:

sbu062 2019-11-14 08:45 Rev.: 8879

branch long obsolete

0 lines of code changed in 151 files:

sbu062 2019-11-13 17:42 Rev.: 8878

fix Windows build options

1 lines of code changed in 1 file:

sbu062 2019-11-13 12:24 Rev.: 8877

added digestion delay in midgut, parameter added

27 lines of code changed in 5 files:

sbu062 2019-11-12 16:35 Rev.: 8876

fix global var case

2 lines of code changed in 1 file:

sbu062 2019-11-12 16:29 Rev.: 8875

`Z7` or `Zi` equivalent to `-g` on Windows intel ifort

2 lines of code changed in 1 file:

sbu062 2019-11-12 16:00 Rev.: 8874

add **docs** doxygen target, latex output disabled

10 lines of code changed in 2 files:

sbu062 2019-11-12 15:50 Rev.: 8873

doxy comments fix

11 lines of code changed in 1 file:

sbu062 2019-11-12 15:36 Rev.: 8872

pdb delete on windows

1 lines of code changed in 1 file:

sbu062 2019-11-12 15:34 Rev.: 8871

write arguments one on a line easier to count and control

7 lines of code changed in 1 file:

sbu062 2019-11-12 15:33 Rev.: 8870

extra checks make nuisance in ifort at `DEBUG` build

6 lines of code changed in 1 file:

sbu062 2019-11-12 15:02 Rev.: 8869

long integer version of (PTread) must have `li` suffix

2 lines of code changed in 1 file:

sbu062 2019-11-12 14:55 Rev.: 8868

GUI type is set by the config file, mandatory; GUI by environment variable now takes priority

19 lines of code changed in 2 files:

sbu062 2019-11-12 14:53 Rev.: 8867

disabled optional parameters for logical PTread function, use types from REALCALC module
- absent logical config value produces cryptic errors on ifort with debug symbols enabled
- now works on all compilers

9 lines of code changed in 1 file:

sbu062 2019-11-12 13:58 Rev.: 8866

only import `c_int64_t` type

1 lines of code changed in 1 file:

sbu062 2019-11-12 11:00 Rev.: 8865

makefile adapted for cross-platform build with ifort and gfortran
- tested on Linux
- build fails on gfortran 5 (winXP)

104 lines of code changed in 1 file:

tla051 2019-11-12 10:25 Rev.: 8864

- read lat/lon from csv
- output daily cum ambient light

2975 lines of code changed in 3 files:

sbu062 2019-11-11 15:07 Rev.: 8863

use `Global_Absorption_Ratio`

2 lines of code changed in 1 file:

sbu062 2019-11-11 15:03 Rev.: 8862

added parameter for absorption ratio

24 lines of code changed in 5 files:

sbu062 2019-11-11 14:47 Rev.: 8861

comments fix

2 lines of code changed in 1 file:

sbu062 2019-11-11 14:39 Rev.: 8860

doxygen comments done on stomach and midgut processors

49 lines of code changed in 1 file:

sbu062 2019-11-11 09:51 Rev.: 8859

access rights fix

2 lines of code changed in 1 file:

tla051 2019-11-11 09:48 Rev.: 8858

add CSV IO to repository

0 lines of code changed in 1 file:

sbu062 2019-11-11 09:36 Rev.: 8857

added config for path-based access control, see `svn_authz`

17 lines of code changed in 2 files:

tla051 2019-11-11 07:46 Rev.: 8856

backup before experimenting with read.csv

227 lines of code changed in 2 files:

sbu062 2019-11-08 15:12 Rev.: 8855

simplify prototype with associate
- fixed value `0.5_SRP` is used, need a new global parameter

10 lines of code changed in 1 file:

sbu062 2019-11-08 15:00 Rev.: 8854

prototype excretion depending on max proportion of dry volume

2 lines of code changed in 1 file:

sbu062 2019-11-08 14:58 Rev.: 8853

debug code, better visibility

2 lines of code changed in 1 file:

sbu062 2019-11-08 14:23 Rev.: 8852

forgotten elemental attribute

2 lines of code changed in 1 file:

sbu062 2019-11-08 14:17 Rev.: 8851

added reference start volume component to FOOD_ITEM_EATEN class
- needed to implement excretion from gut depending on maximum absorption
- build and test ok

49 lines of code changed in 2 files:

sbu062 2019-11-08 14:13 Rev.: 8850

add comment

4 lines of code changed in 1 file:

sbu062 2019-11-08 12:22 Rev.: 8849

fix typo in name, rename (michaelis_menten)

5 lines of code changed in 2 files:

sbu062 2019-11-07 19:15 Rev.: 8848

Km relative, midgut volume reduced

2 lines of code changed in 2 files:

sbu062 2019-11-07 17:50 Rev.: 8847

debug code

4 lines of code changed in 1 file:

sbu062 2019-11-07 14:28 Rev.: 8846

(michaelis_meneten) moved to COMMONDATA

21 lines of code changed in 2 files:

sbu062 2019-11-07 13:58 Rev.: 8845

implemented Michaelis-Meneten adsorption dynamics in mid-gut
- parameters
- M-M in (mg_step)

62 lines of code changed in 6 files:

sbu062 2019-11-07 12:47 Rev.: 8844

prototype Michaelis-Meneten dynamics for midgut, depending on the current total volume, relative to midgut volume

7 lines of code changed in 1 file:

sbu062 2019-11-07 12:39 Rev.: 8843

Michaelis-Meneten equation

24 lines of code changed in 1 file:

sbu062 2019-11-07 10:15 Rev.: 8842

obsolete code deleted

0 lines of code changed in 1 file:

sbu062 2019-11-07 10:11 Rev.: 8841

comments only

3 lines of code changed in 1 file:

sbu062 2019-11-07 10:09 Rev.: 8840

arbitrary tolerance parameter in (food_item_eaten_check_destruct)

15 lines of code changed in 1 file:

sbu062 2019-11-07 10:03 Rev.: 8839

simplify code with `associate`, check for non-missing volumes
- non-mission check is superfluous because MISSING always smaller than tolerance, so far does check

17 lines of code changed in 1 file:

sbu062 2019-11-07 09:48 Rev.: 8838

implemented and updated food volume functions for stomach and midgut

49 lines of code changed in 1 file:

sbu062 2019-11-07 09:31 Rev.: 8837

(mg_step) public interface unification with (st_step)

2 lines of code changed in 2 files:

sbu062 2019-11-07 09:20 Rev.: 8836

better output for midgut

2 lines of code changed in 1 file:

sbu062 2019-11-07 09:16 Rev.: 8835

disable save stomach plot data

2 lines of code changed in 1 file:

sbu062 2019-11-06 16:21 Rev.: 8834

simplify multi-layer object code (fish_stomach_update_step) with `associate` construct

17 lines of code changed in 1 file:

sbu062 2019-11-06 16:04 Rev.: 8833

debugging skeleton (fish_midgut_update_from_stomach)

10 lines of code changed in 2 files:

sbu062 2019-11-06 15:55 Rev.: 8832

fix bug in format, now works both in gfortran and ifort

3 lines of code changed in 2 files:

sbu062 2019-11-06 13:21 Rev.: 8831

intel fortran strictly requires comma in format

2 lines of code changed in 2 files:

sbu062 2019-11-06 13:20 Rev.: 8830

initialise is_destruct because it is counted

10 lines of code changed in 1 file:

sbu062 2019-11-06 12:30 Rev.: 8829

rename (food_item_volume) for stomach, must have stomach in name

8 lines of code changed in 4 files:

sbu062 2019-11-06 07:39 Rev.: 8828

(fish_midgut_update_from_stomach) midgut processing begins after `ingestion_delay` not 1

1 lines of code changed in 1 file:

sbu062 2019-11-05 20:02 Rev.: 8827

more work on midgut
- debug code crash

40 lines of code changed in 3 files:

sbu062 2019-11-05 14:17 Rev.: 8826

arbitrary increment in (fish_midgut_update_from_stomach)

12 lines of code changed in 1 file:

sbu062 2019-11-05 14:08 Rev.: 8825

(fish_midgut_update_from_stomach) update n items in midgut

2 lines of code changed in 1 file:

sbu062 2019-11-05 14:02 Rev.: 8824

small fix

2 lines of code changed in 1 file:

sbu062 2019-11-05 13:58 Rev.: 8823

small whitespace readability

2 lines of code changed in 1 file:

sbu062 2019-11-05 13:36 Rev.: 8822

continue skeleton (fish_midgut_update_from_stomach)

27 lines of code changed in 1 file:

sbu062 2019-11-05 12:42 Rev.: 8821

(food_item_volume) function with zero time_in_process returns zero rather than MISSING volume, continue skeleton

45 lines of code changed in 1 file:

sbu062 2019-11-05 10:34 Rev.: 8820

(food_item_volume) checks for zero or negative processing time, continue skeleton

34 lines of code changed in 2 files:

sbu062 2019-11-05 09:40 Rev.: 8819

rename object component, more correct name for different compartments

14 lines of code changed in 2 files:

sbu062 2019-11-05 09:37 Rev.: 8818

skeleton subroutine for update food items in mid-gut

12 lines of code changed in 1 file:

sbu062 2019-11-04 13:28

rename public intarfaces for stomach functions

7 lines of code changed in 4 files:

sbu062 2019-11-04 13:23 Rev.: 8815

filled todo for Global_Mid_Gut_Volume

1 lines of code changed in 1 file:

sbu062 2019-11-04 13:22 Rev.: 8814

start adding midgut parameter, `Global_Mid_Gut_Volume`

66 lines of code changed in 6 files:

sbu062 2019-11-04 13:09 Rev.: 8813

update doxygen comments

13 lines of code changed in 1 file:

sbu062 2019-11-04 12:46 Rev.: 8812

refactor stomach components to include *stomach* in name

35 lines of code changed in 2 files:

sbu062 2019-11-04 11:53 Rev.: 8811

started to implement midgut

8 lines of code changed in 1 file:

October 2019 »

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