February 2017 Commit Log

Number of Commits:
278
Number of Active Developers:
5
sbu062 2017-02-28 18:50 Rev.: 2863

debug code

12 lines of code changed in 1 file:

sbu062 2017-02-28 17:49 Rev.: 2862

minor fix in (reproduce_do_probability_reproduction_calc)

3 lines of code changed in 1 file:

sbu062 2017-02-28 17:37 Rev.: 2861

minor fix

3 lines of code changed in 1 file:

sbu062 2017-02-28 17:33 Rev.: 2860

check condition no same-sex conspecifics in (reproduce_do_probability_reproduction_calc)

17 lines of code changed in 1 file:

sbu062 2017-02-28 13:41 Rev.: 2859

changed environmant class diagram; reduced big svg schemes to 75% for doxygen fit

4611 lines of code changed in 3 files:

sbu062 2017-02-28 13:27 Rev.: 2858

simplified individual class diagram; reduced big svg schemes to 75% for doxygen fit

34588 lines of code changed in 9 files:

sbu062 2017-02-28 12:50 Rev.: 2857

reduced big svg schemes to 75% for doxygen fit

62074 lines of code changed in 7 files:

sbu062 2017-02-27 18:52 Rev.: 2856

delta mass now compares with same sex conspecifics rather than all other conspecifics (reproduce_do_probability_reproduction_calc)

2 lines of code changed in 1 file:

sbu062 2017-02-27 15:41 Rev.: 2855

fixed file descriptor for output files, now includes the value of the

7 lines of code changed in 1 file:

sbu062 2017-02-27 14:42 Rev.: 2854

changed to nonparametric ADF at line 17732

0 lines of code changed in 2 files:

sbu062 2017-02-27 11:33 Rev.: 2852

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-27 11:31 Rev.: 2851

prepared for n same sex in (probability_reproduction)

22 lines of code changed in 1 file:

sbu062 2017-02-27 07:30 Rev.: 2850

test split as rendered poorly in svg

184 lines of code changed in 2 files:

sbu062 2017-02-27 07:20 Rev.: 2849

added agent's sex to debug

1 lines of code changed in 1 file:

sbu062 2017-02-27 07:15 Rev.: 2848

deleted arrows that render poorly in svg

35 lines of code changed in 2 files:

sbu062 2017-02-27 07:05 Rev.: 2847

added probability of reproduction delta mass interpolator

2622 lines of code changed in 2 files:

sbu062 2017-02-27 07:03 Rev.: 2846

in (reproduce_do_probability_reproduction_calc) introduced relative delta mass

19 lines of code changed in 1 file:

sbu062 2017-02-27 06:31 Rev.: 2845

added doxygen plot for delta mass and debug test oputput for probability of reproduction

13 lines of code changed in 1 file:

sbu062 2017-02-26 21:01 Rev.: 2844

doxygen cleanup minor fix

6 lines of code changed in 1 file:

sbu062 2017-02-26 20:27 Rev.: 2842

doxygen cleanup, minor fixes

20 lines of code changed in 1 file:

sbu062 2017-02-26 19:49 Rev.: 2841

merged latest changes in the main developmentr branch

66956 lines of code changed in 33 files:

sbu062 2017-02-26 11:36 Rev.: 2840

doxygen cleanup: solved glitch of feature when subsection begins at tabbed level after note or param, just have to insert an empty !> before section

31 lines of code changed in 1 file:

sbu062 2017-02-26 11:18 Rev.: 2839

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-26 11:13 Rev.: 2838

minor fix

3 lines of code changed in 1 file:

sbu062 2017-02-26 10:58 Rev.: 2837

doxygen cleanup reindex and join/collapse food resources

36 lines of code changed in 1 file:

sbu062 2017-02-26 09:34 Rev.: 2836

another minr fix

1 lines of code changed in 1 file:

sbu062 2017-02-26 09:32 Rev.: 2835

minor fix

2 lines of code changed in 1 file:

sbu062 2017-02-26 09:30 Rev.: 2834

doxyge cleanup, code (food_resource_collapse)

4 lines of code changed in 1 file:

sbu062 2017-02-25 10:23 Rev.: 2833

changelog updated

130 lines of code changed in 1 file:

sbu062 2017-02-25 10:20 Rev.: 2832

doxygen cleanups

18 lines of code changed in 1 file:

sbu062 2017-02-24 20:03 Rev.: 2831

cleanup visual range backend doxygen

34 lines of code changed in 1 file:

sbu062 2017-02-24 19:43 Rev.: 2830

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-24 19:40 Rev.: 2829

added visual range plots for doxygen

8458 lines of code changed in 6 files:

sbu062 2017-02-24 19:38 Rev.: 2828

doxygen cleanup visual range utils

90 lines of code changed in 1 file:

sbu062 2017-02-24 18:51 Rev.: 2827

small fix

6 lines of code changed in 1 file:

sbu062 2017-02-24 18:50 Rev.: 2826

doxygen cleanup: visual range plot

8 lines of code changed in 1 file:

sbu062 2017-02-24 18:50 Rev.: 2825

added visual range plots

8458 lines of code changed in 6 files:

sbu062 2017-02-24 18:18

minor fix

3 lines of code changed in 2 files:

sbu062 2017-02-24 18:16 Rev.: 2822

doxygen cleanup: further fix food_item_capture_probability_calc

12 lines of code changed in 1 file:

sbu062 2017-02-24 18:04 Rev.: 2821

reduced plot size to 75%

2055 lines of code changed in 2 files:

sbu062 2017-02-24 17:58 Rev.: 2820

added capture probability plot for doxygen

2351 lines of code changed in 2 files:

sbu062 2017-02-24 17:58 Rev.: 2819

doxygen cleanup food_item_capture_probability_calc

22 lines of code changed in 1 file:

sbu062 2017-02-24 11:39 Rev.: 2818

changelog updated

55 lines of code changed in 1 file:

sbu062 2017-02-24 11:30 Rev.: 2817

fix web name for new pdf

1 lines of code changed in 1 file:

sbu062 2017-02-24 11:25 Rev.: 2816

added docroot

7 lines of code changed in 1 file:

sbu062 2017-02-24 11:23 Rev.: 2815

added web scripts

86 lines of code changed in 3 files:

sbu062 2017-02-24 11:00 Rev.: 2814

modified plots, e.g. added reproductive factor perception, added eps for doxygen latex

27666 lines of code changed in 10 files:

sbu062 2017-02-24 09:11 Rev.: 2813

doxygen cleanup: added ref to aha manual

4 lines of code changed in 1 file:

sbu062 2017-02-24 08:18 Rev.: 2812

aha model (building blocks...) are now in doxygen docs

3 lines of code changed in 1 file:

sbu062 2017-02-24 08:09 Rev.: 2811

doxygen fix mainpage

4 lines of code changed in 1 file:

sbu062 2017-02-24 08:05 Rev.: 2810

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-24 07:58 Rev.: 2809

doxygen cleanup: added aha implementation overview to mainpage

75 lines of code changed in 1 file:

sbu062 2017-02-24 07:18 Rev.: 2808

hedtools pdf renamed, update weblink in mainpage

1 lines of code changed in 1 file:

sbu062 2017-02-24 05:58 Rev.: 2807

pdf doc renamed

1 lines of code changed in 1 file:

sbu062 2017-02-24 05:53 Rev.: 2806

fix scale name, added keywords

3 lines of code changed in 1 file:

sbu062 2017-02-24 05:48 Rev.: 2805

fix scale name

1 lines of code changed in 1 file:

sbu062 2017-02-24 05:40 Rev.: 2804

renamed BASE_UTILS.adoc to HEDTOOLS.adoc, AHA model modules isolated into a separate include file MOD_AHA.adoc

5735 lines of code changed in 5 files:

sbu062 2017-02-23 17:54 Rev.: 2803

doxygen cleanup: partly done the body

187 lines of code changed in 1 file:

sbu062 2017-02-23 12:00 Rev.: 2802

one more small change, doxygen cleanup

6 lines of code changed in 1 file:

sbu062 2017-02-23 11:52 Rev.: 2801

fix mainpage

54 lines of code changed in 1 file:

sbu062 2017-02-23 11:00 Rev.: 2800

minor fix doxygen formatting

2 lines of code changed in 1 file:

sbu062 2017-02-23 09:55 Rev.: 2799

minor fix

7 lines of code changed in 1 file:

sbu062 2017-02-23 09:51 Rev.: 2798

doxygen cleanup: added simple intro mainpage

40 lines of code changed in 1 file:

sbu062 2017-02-23 05:22 Rev.: 2797

minor fix latex formula gamma2gene

3 lines of code changed in 1 file:

sbu062 2017-02-23 05:11 Rev.: 2796

another minor doxygen change

0 lines of code changed in 1 file:

sbu062 2017-02-23 05:08 Rev.: 2795

minor change

2 lines of code changed in 1 file:

sbu062 2017-02-22 20:21 Rev.: 2794

added graphs for doxygen docs

2000 lines of code changed in 6 files:

sbu062 2017-02-22 20:18 Rev.: 2793

doxygen cleanup: started body/condition

12 lines of code changed in 1 file:

sbu062 2017-02-22 19:29 Rev.: 2792

doxygen cleanup: done hormones

19 lines of code changed in 1 file:

sbu062 2017-02-22 19:12 Rev.: 2791

doxygen checkup : hormone started

25 lines of code changed in 1 file:

sbu062 2017-02-22 18:45 Rev.: 2790

doxygen cleanup: neuronal response functions in genome done

87 lines of code changed in 1 file:

sbu062 2017-02-22 13:49 Rev.: 2789

doxygen cleanup: partly did the genome objects

227 lines of code changed in 1 file:

sbu062 2017-02-22 10:51 Rev.: 2788

doxygen cleanup: fixed subfunctions for gos_find

23 lines of code changed in 1 file:

sbu062 2017-02-22 10:45 Rev.: 2787

resize plot for doxygen, 75% 1px width

504 lines of code changed in 1 file:

sbu062 2017-02-22 07:30 Rev.: 2786

doxygen micro fix

4 lines of code changed in 1 file:

sbu062 2017-02-22 07:29 Rev.: 2785

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-22 07:24 Rev.: 2784

doxygen cleanup: interpolation plot for nonparametric dissipation

6 lines of code changed in 1 file:

sbu062 2017-02-22 07:13 Rev.: 2783

doxygen cleanup: small fix

3 lines of code changed in 1 file:

sbu062 2017-02-22 06:04 Rev.: 2782

doxygen cleanup: added very short modules intro

15 lines of code changed in 1 file:

sbu062 2017-02-22 06:03 Rev.: 2781

doxygen cleanup: enabled several advanced features for graphviz uml diagrams

5 lines of code changed in 1 file:

sbu062 2017-02-22 05:20 Rev.: 2780

set DIAFILE_DIRS = ./../HEDTOOLS/doc/img/

4 lines of code changed in 1 file:

sbu062 2017-02-21 20:39 Rev.: 2779

doxygen cleanup: fixed all wrong comment delimiters !1 -> !!

9 lines of code changed in 1 file:

sbu062 2017-02-21 20:30 Rev.: 2778

set STRIP_CODE_COMMENTS to NO; better to see full unstripped comments within the linked code

3 lines of code changed in 1 file:

sbu062 2017-02-21 17:27 Rev.: 2777

doxygen cleanup: added figures for latex output, in eps

4 lines of code changed in 1 file:

sbu062 2017-02-21 14:37 Rev.: 2776

minor fix

2 lines of code changed in 1 file:

sbu062 2017-02-21 13:39 Rev.: 2775

scaled big plot down, rendered too big in doxygen

1017 lines of code changed in 1 file:

sbu062 2017-02-21 13:38 Rev.: 2774

small fix

6 lines of code changed in 1 file:

sbu062 2017-02-21 13:19 Rev.: 2773

added plot for doxygen docs

1012 lines of code changed in 1 file:

sbu062 2017-02-21 13:18 Rev.: 2772

doxygen cleanup gos_find, added more figures

69 lines of code changed in 1 file:

sbu062 2017-02-20 09:50 Rev.: 2771

added note on doxygen IMAGE_PATH quirk

3 lines of code changed in 1 file:

sbu062 2017-02-20 03:45 Rev.: 2770

fix latex formula in (reproduce_do_probability_reproduction_calc)

1 lines of code changed in 1 file:

sbu062 2017-02-19 20:16 Rev.: 2769

typing error fix

1 lines of code changed in 1 file:

sbu062 2017-02-19 20:14 Rev.: 2768

doxygen cleanup: straight quotes only

1 lines of code changed in 1 file:

sbu062 2017-02-19 20:14 Rev.: 2767

doxygen cleanup: minor fix quotes

1 lines of code changed in 1 file:

sbu062 2017-02-19 20:08 Rev.: 2766

doxygen cleanup: did (gos_find) and (attention_modulate)

26 lines of code changed in 1 file:

sbu062 2017-02-19 20:06 Rev.: 2765

fix image path, into hedtools img

1 lines of code changed in 1 file:

sbu062 2017-02-19 19:54 Rev.: 2764

added external graphs for doxygen-generated documentation

0 lines of code changed in 2 files:

sbu062 2017-02-19 17:47 Rev.: 2763

doxygen cleanup: minor fix gos_find

33 lines of code changed in 1 file:

sbu062 2017-02-19 16:10 Rev.: 2762

doxygen cleanup, more cleans

14 lines of code changed in 1 file:

sbu062 2017-02-19 11:11 Rev.: 2761

doxygen cleanup minor fix

9 lines of code changed in 1 file:

sbu062 2017-02-19 11:06 Rev.: 2760

doxygen cleanup: added comments on timer_cpu object

15 lines of code changed in 1 file:

sbu062 2017-02-19 10:59 Rev.: 2759

doxygen cleanup: done all within-bound-type descriptions for all objects

50 lines of code changed in 1 file:

sbu062 2017-02-18 21:53 Rev.: 2758

added doxygen comments at within-type-bound interface declaration: ENVIRONMENT

38 lines of code changed in 1 file:

sbu062 2017-02-18 20:33 Rev.: 2757

additional small fixes

6 lines of code changed in 1 file:

sbu062 2017-02-18 20:22 Rev.: 2756

added doxygen comments at within-type-bound interface declaration SPATIAL_MOVING

28 lines of code changed in 1 file:

sbu062 2017-02-18 20:12 Rev.: 2755

added doxygen comments at within-type-bound interface declaration SPATIAL

37 lines of code changed in 1 file:

sbu062 2017-02-18 14:28 Rev.: 2754

doxygen wrong group close tag minor fix: always must be !> @}

1 lines of code changed in 1 file:

sbu062 2017-02-18 14:22 Rev.: 2753

minor fix, a couple of separate-line formulas. punctuation doesn't rebder correctly if punctuation signs are outside closing @] tag

3 lines of code changed in 1 file:

sbu062 2017-02-18 14:06 Rev.: 2752

doxygen @detail tag evokes warnings, correct is @details: fixed

318 lines of code changed in 1 file:

sbu062 2017-02-18 12:31 Rev.: 2751

after initial cleanup, can return HIDE_IN_BODY_DOCS = NO

1 lines of code changed in 1 file:

sbu062 2017-02-18 12:25 Rev.: 2750

minor fix

1 lines of code changed in 1 file:

sbu062 2017-02-18 12:17 Rev.: 2749

doxygen cleanup: hopefully final round of the_environment module cleanup, others should do using this pattern

358 lines of code changed in 1 file:

sbu062 2017-02-18 09:28 Rev.: 2748

more doxygen cleanups: fixed all '!> ### Implementation details ###' headers strictly to level 3

80 lines of code changed in 1 file:

sbu062 2017-02-18 09:13 Rev.: 2747

updated doxygen guide, restored a small portion in the_environment

11 lines of code changed in 1 file:

sbu062 2017-02-18 09:08 Rev.: 2746

updated doxygen style guidelines at header, restored some doxygen body tags in certain the_environment routines

93 lines of code changed in 1 file:

sbu062 2017-02-18 08:38 Rev.: 2745

added doxygen usage style descriotion

9 lines of code changed in 1 file:

sbu062 2017-02-18 00:07 Rev.: 2744

fixed wron this%capture_efficiency in accessof func (predator_get_capture_efficiency)

1 lines of code changed in 1 file:

sbu062 2017-02-18 00:01 Rev.: 2743

doxygen cleanup: minor fix

5 lines of code changed in 1 file:

sbu062 2017-02-17 23:55 Rev.: 2742

doxygen cleanup: did whole the_environment module

98 lines of code changed in 1 file:

sbu062 2017-02-17 23:49 Rev.: 2741

doxygen cleanup up to (predator_make_init)

14 lines of code changed in 1 file:

sbu062 2017-02-17 23:46 Rev.: 2740

doxygen cleanup: did (spatial_neighbours_distances)

51 lines of code changed in 1 file:

sbu062 2017-02-17 23:41 Rev.: 2739

doxygen cleanup: did food resource in the_environment

291 lines of code changed in 1 file:

sbu062 2017-02-17 23:19 Rev.: 2738

doxygen cleanup: did food capture engine

115 lines of code changed in 1 file:

sbu062 2017-02-17 23:05 Rev.: 2737

doxygen cleanup: done illumination engine in the_environment

90 lines of code changed in 1 file:

sbu062 2017-02-17 22:41 Rev.: 2736

changelog updated

14 lines of code changed in 1 file:

sbu062 2017-02-17 22:39 Rev.: 2735

enable EXTRACT_PRIVATE

1 lines of code changed in 1 file:

sbu062 2017-02-17 21:39 Rev.: 2734

doxygen cleanup: fixed maxima code blocks with @code ... @endcode tags

31 lines of code changed in 1 file:

sbu062 2017-02-17 21:15 Rev.: 2733

doxyge cleanup: done in the_environmemnt post AKVISRANGE

573 lines of code changed in 1 file:

sbu062 2017-02-17 18:50 Rev.: 2732

doxygen cleanup, deleted off-header comments

7 lines of code changed in 1 file:

sbu062 2017-02-17 18:48 Rev.: 2731

further cleanuo doxygen in the_environment; restored type-bound call in (environment_random_uniform_spatial_vec_3d) that crashed in intel fortran 13, now works fine in v17 ifort

98 lines of code changed in 1 file:

sbu062 2017-02-17 18:27 Rev.: 2730

started doxygen cleanup for the_environment

92 lines of code changed in 1 file:

sbu062 2017-02-17 17:50 Rev.: 2729

HIDE_IN_BODY_DOCS set to YES to reduce clutter in doxygen output, it is seems messy before doxygen comments cleanup

1 lines of code changed in 1 file:

sbu062 2017-02-17 17:37 Rev.: 2728

changelog update

48 lines of code changed in 1 file:

sbu062 2017-02-17 17:35 Rev.: 2727

minor fix list

7 lines of code changed in 1 file:

sbu062 2017-02-17 17:23 Rev.: 2726

doxygen comments in commondata further cleanup, implamented function (within) for forced conversion to range

100 lines of code changed in 1 file:

sbu062 2017-02-17 14:48 Rev.: 2725

doxygen cleanup: fixed member groups in commondata

17 lines of code changed in 1 file:

sbu062 2017-02-17 14:34 Rev.: 2724

doxygen cleanup: further cleanup groups @name

118 lines of code changed in 1 file:

sbu062 2017-02-17 13:19 Rev.: 2723

doxygen cleanup: small fix

2 lines of code changed in 1 file:

sbu062 2017-02-17 13:07 Rev.: 2722

doxygen cleanup: fixed titles of parameter groupd in commondata

29 lines of code changed in 1 file:

sbu062 2017-02-17 12:34 Rev.: 2721

doxygenn cleanup: done COMMONDATA all procedures

377 lines of code changed in 1 file:

sbu062 2017-02-17 10:27 Rev.: 2720

doxygen cleanup: fixed docs within (alleleconv) and (cv2variance)

38 lines of code changed in 1 file:

sbu062 2017-02-17 09:48 Rev.: 2719

doxygen cleanup: more fixes in gammma2gene

13 lines of code changed in 1 file:

sbu062 2017-02-17 09:35 Rev.: 2718

doxygen cleanup: fix arrays example

3 lines of code changed in 1 file:

sbu062 2017-02-17 09:32 Rev.: 2717

doxygen: started cleaning-up doxygen comments, currently produces messy doc; now up to 4293

127 lines of code changed in 1 file:

sbu062 2017-02-17 06:10 Rev.: 2716

cleanup some messy doxygen tags

47 lines of code changed in 1 file:

sbu062 2017-02-16 21:19 Rev.: 2715

fix doxygen formulas, use now square brackets formula style, so far in (reproduce_do_probability_reproduction_calc)

4 lines of code changed in 1 file:

sbu062 2017-02-16 21:07 Rev.: 2714

fix doxygen subtitles in comments, so far in (gos_find_global_state) and (reproduce_do_probability_reproduction_calc)

54 lines of code changed in 1 file:

sbu062 2017-02-16 16:31 Rev.: 2713

fix latex formula

2 lines of code changed in 1 file:

sbu062 2017-02-16 16:22 Rev.: 2712

redeclared (consp_perception_is_seeing_conspecifics) elemental; (reproduce_do_probability_reproduction_calc) warning about pure/elemental

5 lines of code changed in 1 file:

sbu062 2017-02-16 16:12 Rev.: 2711

implemented function to calculate the probability of successful reproduction (reproduce_do_probability_reproduction_calc)

166 lines of code changed in 1 file:

sbu062 2017-02-16 13:21 Rev.: 2710

added body mass component to the conspecifics perception

45 lines of code changed in 1 file:

sbu062 2017-02-16 12:38 Rev.: 2709

in (reproduce_do_this) comments and added actor agent

11 lines of code changed in 1 file:

sbu062 2017-02-16 11:08 Rev.: 2708

fix comment

1 lines of code changed in 1 file:

sbu062 2017-02-16 11:06 Rev.: 2707

implemented REPRODUCE behaviour class, specific (init), added do_this, (expectancies_calculate) and (execute) protos

57 lines of code changed in 1 file:

sbu062 2017-02-16 04:59 Rev.: 2706

fix commenta on (add_to_history) interface

3 lines of code changed in 1 file:

sbu062 2017-02-16 04:53 Rev.: 2705

fix (add_to_history) comments

7 lines of code changed in 1 file:

sbu062 2017-02-16 04:38 Rev.: 2704

fix comments example call on (see_pred)

0 lines of code changed in 1 file:

sbu062 2017-02-15 19:33 Rev.: 2703

changelog update

32 lines of code changed in 1 file:

sbu062 2017-02-15 19:19 Rev.: 2702

refactored (see_pred) procedure (predator_perception_get_visrange_objects), simplified input: now only the array of predators to search within is used as mandatory dummy parameter

11 lines of code changed in 1 file:

sbu062 2017-02-15 18:55 Rev.: 2701

fix comments on (see_consp)

2 lines of code changed in 1 file:

sbu062 2017-02-15 13:39 Rev.: 2700

refactored (see_consp) procedure (consp_perception_get_visrange_objects), simplified input: now only the array of agents to search within is used as mandatory dummy parameter; agents'sizes, alive status and sex are obtained from the input dummy array

21 lines of code changed in 1 file:

sbu062 2017-02-15 13:03 Rev.: 2699

incorporated sex into the conspecific perception object, several procs

62 lines of code changed in 1 file:

lla008 2017-02-15 11:25 Rev.: 2698

Elaborated on the Arousal_GOS_Dissipation_Factor comments

7 lines of code changed in 1 file:

sbu062 2017-02-14 12:29 Rev.: 2697

fix link description

1 lines of code changed in 1 file:

sbu062 2017-02-14 12:08 Rev.: 2696

deleted all '@example' tags that do not correctly in doxygen (normally require linking with separate code set by EXAMPLE_PATH)

11 lines of code changed in 1 file:

sbu062 2017-02-14 11:12 Rev.: 2695

fix numbered

1 lines of code changed in 1 file:

sbu062 2017-02-14 10:44 Rev.: 2694

added link to doxygen docs for the HEDG2_01 code

4 lines of code changed in 1 file:

sbu062 2017-02-14 10:22 Rev.: 2693

add pdf doc to web index page

3 lines of code changed in 1 file:

sbu062 2017-02-14 10:00 Rev.: 2692

merged latest minor changes from work branch

1 lines of code changed in 1 file:

sbu062 2017-02-14 09:58 Rev.: 2691

repo reorganize: deleting old hormone trunk: hormonemodel is in 'hormones_v2' at the root

0 lines of code changed in 2 files:

sbu062 2017-02-14 09:40 Rev.: 2690

deleted old obsolete branch: hormonemodel is in 'hormones_v2' at the root

0 lines of code changed in 5 files:

sbu062 2017-02-14 09:37 Rev.: 2689

added simple starting index page source

21 lines of code changed in 1 file:

cje012 2017-02-14 09:23 Rev.: 2687

Added a line about how to use meld.

3 lines of code changed in 1 file:

cje012 2017-02-14 09:09 Rev.: 2686

Moved file up one folder.

59 lines of code changed in 2 files:

cje012 2017-02-14 09:06 Rev.: 2685

Copy of the SVN-guide to my new hormone branch.

0 lines of code changed in 1 file:

sbu062 2017-02-14 09:05 Rev.: 2684

fix outdated pdf web address

1 lines of code changed in 1 file:

sbu062 2017-02-13 15:32 Rev.: 2683

cleanup the repo, deleting obsolete branches.

0 lines of code changed in 4 files:

sbu062 2017-02-13 11:22 Rev.: 2682

(timer_cpu_log) added as a shortcut for timing, small changes in comments

20 lines of code changed in 1 file:

sbu062 2017-02-13 10:02 Rev.: 2681

code reorganized: implemented rudimentary (life_cycles_time_step), moved all debug code from block DEBUG_03 to (life_cycles_debug_test); a few other minor comments changes

416 lines of code changed in 1 file:

sbu062 2017-02-13 09:34 Rev.: 2680

small comments, listing implemented selectable functions

3 lines of code changed in 1 file:

sbu062 2017-02-11 16:15 Rev.: 2679

reorganized repo: deleted obsolete dirs

0 lines of code changed in 21 files:

sbu062 2017-02-10 23:48 Rev.: 2678

changelog updated

38 lines of code changed in 1 file:

sbu062 2017-02-10 23:45 Rev.: 2677

added baseline levels of sex steroids

43 lines of code changed in 1 file:

sbu062 2017-02-10 23:19 Rev.: 2676

clean sex steroids hormone history with (hormones_clean_history_stack)

14 lines of code changed in 1 file:

sbu062 2017-02-10 16:58 Rev.: 2675

relaxed parameters for easier growth

5 lines of code changed in 1 file:

sbu062 2017-02-10 16:26 Rev.: 2674

minor reformats only

4 lines of code changed in 1 file:

sbu062 2017-02-10 16:15 Rev.: 2673

fixed class-object intent in (food_item_clone_assign); reduced MASS_GROWTH_THRESHOLD to 1%

2 lines of code changed in 1 file:

sbu062 2017-02-10 16:09 Rev.: 2672

minor change and debug code shift

31 lines of code changed in 1 file:

sbu062 2017-02-10 15:40 Rev.: 2671

minor fix comment

1 lines of code changed in 1 file:

sbu062 2017-02-10 15:39 Rev.: 2670

SEX_STEROIDS_INCREMENT_FACTOR_AGE_CURVE_ABSCISSA midpoint changed to 0.25 of LIFESPAN; debug code small change : walk distance increased to make more food item encounters

4 lines of code changed in 1 file:

sbu062 2017-02-10 15:11 Rev.: 2669

added (sex_steroids_update) in debug code for testing

2 lines of code changed in 1 file:

sbu062 2017-02-10 15:03 Rev.: 2668

added (sex_steroids_update) interface for (sex_steroids_update_increment)

2 lines of code changed in 1 file:

sbu062 2017-02-10 15:01 Rev.: 2667

implemented steroid increment factor function depending on the agent's body length in (sex_steroids_update_increment), had to move BODY_LENGTH_MAX and a few other parameters upwards in COMMONDATA to enable use in interpolation grid parameters

79 lines of code changed in 1 file:

sbu062 2017-02-10 14:39 Rev.: 2666

sex steroid increment factor based on age moved into a function in (sex_steroids_update_increment)

45 lines of code changed in 1 file:

sbu062 2017-02-10 14:31 Rev.: 2665

implemented (sex_steroids_update_increment) for calculating sex steroid hormone dynamics, now increment depends on the agent's age; need also dependency on body length

100 lines of code changed in 1 file:

sbu062 2017-02-10 12:08 Rev.: 2664

fixed wrong intent the_other in (food_item_clone_assign)

1 lines of code changed in 1 file:

jwe041 2017-02-10 10:44 Rev.: 2663

removed figures from strategy- and fitnessconsequences-matrix

added figures for surplus before and after growth

62 lines of code changed in 1 file:

sbu062 2017-02-10 10:39 Rev.: 2662

added testosterone and estrogen history stacks and auto-update upon (set)

35 lines of code changed in 1 file:

sbu062 2017-02-10 09:21 Rev.: 2661

added a few more comments on writing files for saving data

9 lines of code changed in 1 file:

sbu062 2017-02-10 09:10 Rev.: 2660

minor fix function to build header row: we forgot to set n_vars parameter in place of 100 (it sets the width of the leading zeroes as, e.g. in VAR_001 or VAR_1)

1 lines of code changed in 1 file:

sbu062 2017-02-09 20:37 Rev.: 2659

merged my latest changes

26 lines of code changed in 1 file:

sbu062 2017-02-09 20:12 Rev.: 2658

debug code: added histogram of walk step distances (way passed)

20 lines of code changed in 1 file:

sbu062 2017-02-09 17:28 Rev.: 2657

deleted xyz data as duplicating

0 lines of code changed in 1 file:

sbu062 2017-02-09 17:22 Rev.: 2656

deleted agent's xyz data as dupliating

0 lines of code changed in 1 file:

sbu062 2017-02-09 15:44 Rev.: 2655

reduced huge variation of step in rwalk, added current XYZ position after walk

6 lines of code changed in 1 file:

sbu062 2017-02-09 15:43 Rev.: 2654

debug code: added current coords for agent

5 lines of code changed in 1 file:

sbu062 2017-02-09 15:30 Rev.: 2653

debug code: reduced walk step variance from huge

6 lines of code changed in 1 file:

sbu062 2017-02-09 15:02 Rev.: 2652

added AROUSAL_GOS_DISSIPATION_FACTOR value to the output file names

9 lines of code changed in 1 file:

sbu062 2017-02-09 14:28 Rev.: 2651

added a few more comments

6 lines of code changed in 1 file:

sbu062 2017-02-09 14:16 Rev.: 2650

increased AROUSAL_GOS_DISSIPATION_FACTOR to 0,85

1 lines of code changed in 1 file:

sbu062 2017-02-09 13:52 Rev.: 2649

produced first rows for output files as column labels

44 lines of code changed in 1 file:

jwe041 2017-02-09 13:10 Rev.: 2648

added variable for ghf, thf & oxf step in diagramcode

8 lines of code changed in 1 file:

sbu062 2017-02-09 13:08 Rev.: 2647

added csv file outputs for gos arousal and gos label

67 lines of code changed in 1 file:

sbu062 2017-02-09 10:35 Rev.: 2646

minor comment on (clone) food item

3 lines of code changed in 1 file:

sbu062 2017-02-09 10:02 Rev.: 2645

merged my latest changes in the main code

1330 lines of code changed in 2 files:

sbu062 2017-02-09 09:53 Rev.: 2644

changelog updated

40 lines of code changed in 1 file:

sbu062 2017-02-09 09:23 Rev.: 2643

note on latest reindex parameter in comments, additional warning on calling (unjoin) upon sorting

7 lines of code changed in 1 file:

cje012 2017-02-09 08:50 Rev.: 2642

Replaced old version with the one from trunk.

53 lines of code changed in 1 file:

cje012 2017-02-09 08:48 Rev.: 2641

Replaced old version with version from trunk.

62 lines of code changed in 1 file:

sbu062 2017-02-08 19:48 Rev.: 2640

added reindex parameter to debug code, added code example for (join) and (unjoin)

22 lines of code changed in 1 file:

sbu062 2017-02-08 17:49 Rev.: 2639

another small cleanup

0 lines of code changed in 1 file:

sbu062 2017-02-08 17:48 Rev.: 2638

cleanup obsolete (join) call

0 lines of code changed in 1 file:

sbu062 2017-02-08 17:47 Rev.: 2637

deleted debug code gaussian walk for the whole population

0 lines of code changed in 1 file:

sbu062 2017-02-08 16:52 Rev.: 2636

added 'reindex' parameter to (join) and (unjoin) for automatic reindexing of food resources.

118 lines of code changed in 1 file:

sbu062 2017-02-08 16:34 Rev.: 2635

the (destroy) method for food resource; debug code to check (join) and (unjoin) in food perception and food eating; deleted test code for join/unjoin in block DEBUG_01

65 lines of code changed in 1 file:

sbu062 2017-02-07 16:40 Rev.: 2634

debug code testing join unjoin food resources

44 lines of code changed in 1 file:

sbu062 2017-02-07 16:20 Rev.: 2633

all sub-component unjoin implementation for (food_resources_update_back)

435 lines of code changed in 1 file:

sbu062 2017-02-07 16:09 Rev.: 2632

single sub-component update implementation for (food_resources_update_back)

30 lines of code changed in 1 file:

sbu062 2017-02-07 15:39 Rev.: 2631

now (unjoin) is type bound (food_resources_update_back)

11 lines of code changed in 1 file:

sbu062 2017-02-07 15:35 Rev.: 2630

fix comments

7 lines of code changed in 1 file:

sbu062 2017-02-07 15:05 Rev.: 2629

fixed non-joined iid in (join) method for food resource class, debug code

58 lines of code changed in 1 file:

sbu062 2017-02-07 14:49 Rev.: 2628

more warnings

17 lines of code changed in 1 file:

sbu062 2017-02-07 14:41 Rev.: 2627

redeclared (food_resources_collapse) procedure as type bound with interface (join); additional comments and warnings

12 lines of code changed in 1 file:

sbu062 2017-02-07 14:30 Rev.: 2626

implemented (clone) method fof food_item; (food_resources_collapse) to join several food resource objects; cleanup debug code

600 lines of code changed in 1 file:

cje012 2017-02-07 13:56 Rev.: 2625

Added variable iftest for easier debugging.

7 lines of code changed in 1 file:

cje012 2017-02-07 11:29 Rev.: 2624

Changed conversion_cost = (surplus_before_growth/conversion_efficiency)... to ... (surplus_before_growth*conversion_efficiency)... under else in forwards and backwards.

2 lines of code changed in 1 file:

cje012 2017-02-07 10:32 Rev.: 2623

Updated to work with new code

2 lines of code changed in 1 file:

sbu062 2017-02-03 17:14 Rev.: 2622

merged latest changes

24 lines of code changed in 2 files:

sbu062 2017-02-03 17:10 Rev.: 2621

changelog updated

17 lines of code changed in 1 file:

sbu062 2017-02-03 17:08 Rev.: 2620

deleted testing call to (reindex_food_resources)

0 lines of code changed in 1 file:

sbu062 2017-02-03 17:04 Rev.: 2619

merged my latest changes, tested

196 lines of code changed in 1 file:

sbu062 2017-02-03 15:38 Rev.: 2618

fixed wrong index in (food_resource_reset_iid_all); fixed new proc name in environment build procedure; added optional parameter flag for reindex in (food_resource_sort_by_size)

17 lines of code changed in 1 file:

sbu062 2017-02-03 13:01 Rev.: 2617

renamed object-list implementation to (reindex_food_resources)

2 lines of code changed in 1 file:

sbu062 2017-02-03 12:58 Rev.: 2616

reimplemented (reindex_food_resource_array) to accept list or eaw resource objects, array creates problems with passing array constructor for object array dummy

158 lines of code changed in 1 file:

cje012 2017-02-03 12:21 Rev.: 2615

Moved calculations for somatic_weight and length after growth futher down in the code in FORWARD to avoid errors in the future.

6 lines of code changed in 1 file:

sbu062 2017-02-03 12:16 Rev.: 2614

arbitrary starting index in (food_resource_reset_iid_all), non-parallel reindex of array of food resources (reindex_food_resource_array)

46 lines of code changed in 1 file:

cje012 2017-02-03 11:53 Rev.: 2613

Removed some comments and made some minor changes so all if-statements follow the same standard.

17 lines of code changed in 1 file:

sbu062 2017-02-02 21:12 Rev.: 2612

changelog updated

1512 lines of code changed in 1 file:

sbu062 2017-02-02 21:10 Rev.: 2611

merged latest, disabled random iid in food item and resource

20 lines of code changed in 2 files:

sbu062 2017-02-02 21:05 Rev.: 2610

changelog updated

11 lines of code changed in 1 file:

sbu062 2017-02-02 21:02 Rev.: 2609

completely disabled random iids in (food_item_make), converted to elemental; (food_resource_make) uses now do concurrent, converted to pure

9 lines of code changed in 1 file:

sbu062 2017-02-02 20:30 Rev.: 2608

merged latest changes after my test

614 lines of code changed in 2 files:

sbu062 2017-02-02 17:03 Rev.: 2607

deleting reprfact branch that implemented reproductive factor perception component, all reintegrated to main HEDG2_01

0 lines of code changed in 1 file:

sbu062 2017-02-02 16:55 Rev.: 2605

merged the 'repfract' branch implementing reproductive factor perception component and fixes to non-deleted food items that were eaten by the agents

567 lines of code changed in 1 file:

sbu062 2017-02-02 16:48 Rev.: 2604

minor fix log

1 lines of code changed in 1 file:

sbu062 2017-02-02 16:41 Rev.: 2603

deleted obsolete trim in (individ_label), extra warning

4 lines of code changed in 1 file:

sbu062 2017-02-02 16:38 Rev.: 2602

intel fortran does not allow elemental (genome_label_get) to have allocatable attribute, reset to fixed, now using trim in invocations, especially file names

18 lines of code changed in 1 file:

sbu062 2017-02-02 16:20 Rev.: 2601

fixed bug of non deleting eaten food items from the resource (were only deleted from the agent's perception object); (eat_food_item_do_execute) now requires mandatory food_resource_real; implemented (reindex) to reset iids for all food items within the resource; (set_iid) now provides mandatory iid and is elemental, random iid is optionally set in (make) method for FOOD_ITEM ; all (qsort) and caller subroutines are now pure and elemental

84 lines of code changed in 1 file:

sbu062 2017-02-02 15:01 Rev.: 2600

debug code

22 lines of code changed in 1 file:

sbu062 2017-02-02 13:07 Rev.: 2599

added call to (%perception_to_memory) in debug code; save perception data in debug code; (genome_label_get) set elemental

20 lines of code changed in 1 file:

sbu062 2017-02-02 11:59 Rev.: 2598

fixed non-updating reprfac in (eat_food_item_motivations_expect), resulted in negative GOS expectancies

10 lines of code changed in 1 file:

jwe041 2017-02-02 10:28 Rev.: 2597

moved reserves_max

3 lines of code changed in 1 file:

jwe041 2017-02-02 10:22 Rev.: 2596

reserves_max added in forward simulation

4 lines of code changed in 1 file:

sbu062 2017-02-02 09:43 Rev.: 2595

fix comments and formatting

20 lines of code changed in 1 file:

jwe041 2017-02-02 09:05 Rev.: 2594

removed typing error

1 lines of code changed in 1 file:

nzlcj 2017-02-02 08:44 Rev.: 2593

Looked for bugs together. Likely something is not identical in forward and backwards routine. Changed interpolation to use reserve state below.

12 lines of code changed in 1 file:

sbu062 2017-02-01 19:04 Rev.: 2592

changelog updated

46 lines of code changed in 1 file:

sbu062 2017-02-01 19:01 Rev.: 2591

added perception component for the 'reproductive factor' PERCEPT_REPRFACT, a combination of sex hormones that can be calculated differently in males and females (e.g. different weights of testosteron and estrogen)

0 lines of code changed in 2 files:

jwe041 2017-02-01 13:09 Rev.: 2589

removed unused variable (O2_free)

2 lines of code changed in 1 file:

sbu062 2017-02-01 12:53 Rev.: 2588

more comments on Lars subroutine call

1 lines of code changed in 1 file:

sbu062 2017-02-01 12:41 Rev.: 2587

marked Lars' test lab code call to avoid rewriting on svn conflict

15 lines of code changed in 1 file:

sbu062 2017-02-01 10:40 Rev.: 2585

merged my latest changes in the code

127 lines of code changed in 1 file:

sbu062 2017-02-01 10:34 Rev.: 2584

function (distance_average) bound to FOOD_RESOURCE, using now in main code logging

45 lines of code changed in 1 file:

jwe041 2017-02-01 10:32 Rev.: 2583

updatet figure(s)

53 lines of code changed in 1 file:

jwe041 2017-02-01 10:32 Rev.: 2582

changed categories in ind-matrix for new mortality figure

6 lines of code changed in 1 file:

sbu062 2017-02-01 10:01 Rev.: 2581

append hours to timer log, if calc's took very long

6 lines of code changed in 1 file:

sbu062 2017-02-01 09:51 Rev.: 2580

moved conversion functions (l2i) and (l2r) out from (population_save_data_all_agents_csv), to COMMONDATA, now (conv_l2r) and (conv_l2i), old version l2r substituted by the new (code almost identical)

60 lines of code changed in 1 file:

sbu062 2017-02-01 09:23 Rev.: 2579

fixed (l2i) and (l2r)

28 lines of code changed in 1 file:

January 2017 »

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