September 2017 Commit Log

Number of Commits:
526
Number of Active Developers:
2
sbu062 2017-09-30 21:02 Rev.: 5641

shorter report

1 lines of code changed in 1 file:

sbu062 2017-09-30 19:53 Rev.: 5640

fix loop, was incomplete, need cycle

2 lines of code changed in 1 file:

sbu062 2017-09-30 17:34 Rev.: 5639

add basics to logge init

5 lines of code changed in 1 file:

sbu062 2017-09-30 17:34 Rev.: 5638

minor reformat

3 lines of code changed in 1 file:

sbu062 2017-09-30 17:20 Rev.: 5637

(age_reset): reset agents' age: call it in (lifecycle_preevol)

17 lines of code changed in 1 file:

sbu062 2017-09-30 16:00 Rev.: 5636

(mate_reproduce) and (selection): use (ga_reproduce_max) function for GA_REPRODUCE_N

3 lines of code changed in 1 file:

sbu062 2017-09-30 16:00 Rev.: 5635

(population_ga_reproduce_max): pure function: deleted raw do loop

1 lines of code changed in 1 file:

sbu062 2017-09-30 16:00 Rev.: 5634

(population_ga_reproduce_max): sets lower limit on ga_reproduce_n

33 lines of code changed in 1 file:

sbu062 2017-09-30 15:01 Rev.: 5633

(population_lifecycle_step_preevol): check dead, skip if yes

6 lines of code changed in 1 file:

sbu062 2017-09-30 11:07 Rev.: 5632

doc: small fix

1 lines of code changed in 1 file:

sbu062 2017-09-30 10:59 Rev.: 5631

doc: ssmall fix

1 lines of code changed in 1 file:

sbu062 2017-09-30 09:51 Rev.: 5630

doc: setting is_debug as normal non-protected global

8 lines of code changed in 1 file:

sbu062 2017-09-30 07:08 Rev.: 5629

(lifecycle_preevol): log delimiters only in debug mode, they are tool messy

1 lines of code changed in 1 file:

sbu062 2017-09-30 06:30 Rev.: 5628

doc: get rid of uppercase, they are not rendered well

1 lines of code changed in 1 file:

sbu062 2017-09-30 06:24 Rev.: 5627

(generations_loop_ga): average distance between food items reported once a generation normally, in (lifecycle_preevol) only during debug mode: it is slow

12 lines of code changed in 1 file:

sbu062 2017-09-30 05:55 Rev.: 5626

(lifecycle_preevol): report average distance

2 lines of code changed in 1 file:

sbu062 2017-09-30 05:46 Rev.: 5625

(generations_loop_ga): disabled docs for disabled code

14 lines of code changed in 1 file:

sbu062 2017-09-30 05:28 Rev.: 5624

(generations_loop_ga): disabled second saving

9 lines of code changed in 1 file:

sbu062 2017-09-30 05:15 Rev.: 5623

(mate_reproduce): disable mutation in the elite, wider population base for recombine

5 lines of code changed in 1 file:

sbu062 2017-09-30 05:10 Rev.: 5622

(lifecycle_preevol): food resources saved only in debug mode

2 lines of code changed in 1 file:

sbu062 2017-09-29 17:52 Rev.: 5621

doc: small fix

2 lines of code changed in 1 file:

sbu062 2017-09-29 17:49 Rev.: 5620

(mate_reproduce): mutate goes before (init)

8 lines of code changed in 1 file:

sbu062 2017-09-29 17:49 Rev.: 5619

(mate_reproduce): init new recombined agents excluding the genome

5 lines of code changed in 1 file:

sbu062 2017-09-29 17:49 Rev.: 5618

(individual_init_random): optional parameter exclude_genome

12 lines of code changed in 1 file:

sbu062 2017-09-29 17:49 Rev.: 5617

(generations_loop_ga): disabled operations on 'proto_offspring', they are swapped anyway

2 lines of code changed in 1 file:

sbu062 2017-09-29 17:24 Rev.: 5616

(generations_loop_ga): need also proto_parents as it is post-swap

2 lines of code changed in 1 file:

sbu062 2017-09-29 17:15 Rev.: 5615

cancel reinit dead agents, they are created anyway; make recombined agents (lives)

7 lines of code changed in 1 file:

sbu062 2017-09-29 17:07 Rev.: 5614

(mate_reproduce): mutate the elite group too

19 lines of code changed in 1 file:

sbu062 2017-09-29 17:07 Rev.: 5613

(mate_reproduce): stronger selection, recombine only the best "elite", not POPSIZE/2

2 lines of code changed in 1 file:

sbu062 2017-09-29 17:07 Rev.: 5612

(mate_reproduce): avoid zombies, any dead agents reinitialised from random

4 lines of code changed in 1 file:

sbu062 2017-09-29 12:34 Rev.: 5611

(lifecycle_preevol): average distance between food items logged at each time step; always save food data

14 lines of code changed in 1 file:

sbu062 2017-09-29 12:10 Rev.: 5610

shorter anchor

4 lines of code changed in 1 file:

sbu062 2017-09-29 12:04

doc: small fix

5 lines of code changed in 3 files:

sbu062 2017-09-29 11:51 Rev.: 5606

DEBUG_COMPILER_OPTIMISE tag: code example

9 lines of code changed in 1 file:

sbu062 2017-09-29 11:51

DEBUG_COMPILER_OPTIMISE tag: notes on the parameter optimisation of the debug mode

26 lines of code changed in 2 files:

sbu062 2017-09-29 10:33 Rev.: 5603

scope is local

5 lines of code changed in 1 file:

sbu062 2017-09-29 10:29 Rev.: 5602

typo fix

1 lines of code changed in 1 file:

sbu062 2017-09-29 08:54 Rev.: 5601

move seed init to (system_init)

6 lines of code changed in 2 files:

sbu062 2017-09-29 06:45 Rev.: 5600

set weaker criteria for mass check

2 lines of code changed in 1 file:

sbu062 2017-09-29 06:42 Rev.: 5599

(body_mass_grow_do_calculate): body mass always exceeds BODY_MASS_MIN

1 lines of code changed in 1 file:

sbu062 2017-09-29 06:34 Rev.: 5598

check body mass: in (cost_swimming_standard) resulted in NaNs

14 lines of code changed in 1 file:

sbu062 2017-09-29 05:58 Rev.: 5597

(individual_preevol_fitness_calc): exclude dead

7 lines of code changed in 1 file:

sbu062 2017-09-28 23:42 Rev.: 5596

doc: update docs

5 lines of code changed in 1 file:

sbu062 2017-09-28 23:04 Rev.: 5595

(generations_loop_ga): fix tag

1 lines of code changed in 1 file:

sbu062 2017-09-28 22:55 Rev.: 5594

less generations in pre-evol

1 lines of code changed in 1 file:

sbu062 2017-09-28 22:51 Rev.: 5593

(generations_loop_ga): add tag to log

1 lines of code changed in 1 file:

sbu062 2017-09-28 22:47 Rev.: 5592

(lifecycle_preevol): log also generation

3 lines of code changed in 1 file:

sbu062 2017-09-28 22:43 Rev.: 5591

log stages in non-debug also

10 lines of code changed in 1 file:

sbu062 2017-09-28 22:34 Rev.: 5590

(population_preevol_fitness_calc): delete concurrent loop fully here

0 lines of code changed in 1 file:

sbu062 2017-09-28 22:30 Rev.: 5589

(population_preevol_fitness_calc): disable concurrent loop, use single elemental func

5 lines of code changed in 1 file:

sbu062 2017-09-28 22:20

(generations_loop_ga): logging each stage

12 lines of code changed in 2 files:

sbu062 2017-09-28 22:19 Rev.: 5586

(generations_loop_ga): forgotten (scatter_uniform) of population_two, crashed on stage 2

1 lines of code changed in 1 file:

sbu062 2017-09-28 21:33 Rev.: 5585

(mate_reproduce): disable (sex_init), as it is in (init_genome)

1 lines of code changed in 1 file:

sbu062 2017-09-28 21:23 Rev.: 5584

(population_lifecycle_step_preevol): debug zero agent_in

2 lines of code changed in 1 file:

sbu062 2017-09-28 21:14 Rev.: 5583

(population_lifecycle_step_preevol): debug zero agent_in

4 lines of code changed in 1 file:

sbu062 2017-09-28 20:16 Rev.: 5582

small fix logging

1 lines of code changed in 1 file:

sbu062 2017-09-28 19:40 Rev.: 5581

small fix logging

1 lines of code changed in 1 file:

sbu062 2017-09-28 19:31 Rev.: 5580

(mate_reproduce): fix logging, move afterwards init

4 lines of code changed in 1 file:

sbu062 2017-09-28 19:22 Rev.: 5579

fixes: init fitness in create_zero; more logging; use loop to calculate call fitness_calc()

24 lines of code changed in 1 file:

sbu062 2017-09-28 18:03 Rev.: 5578

(population_lifecycle_step_preevol): more logging at behaviour

4 lines of code changed in 1 file:

sbu062 2017-09-28 15:56 Rev.: 5577

bigger popsize for real simulation test

1 lines of code changed in 1 file:

sbu062 2017-09-28 15:40

(logger_init): log GA basic parameters

8 lines of code changed in 2 files:

sbu062 2017-09-28 15:40 Rev.: 5574

get rid of the last prototype objects: 'str' and GA_TARGET

0 lines of code changed in 1 file:

sbu062 2017-09-28 15:14 Rev.: 5573

(generation_loop_ga): cleanup and fix docs and notes

20 lines of code changed in 1 file:

sbu062 2017-09-28 14:56

(generation_loop_ga): cleanup and fix docs and notes

7 lines of code changed in 3 files:

sbu062 2017-09-28 14:52 Rev.: 5569

(generations_loop_ga): cleanup and fix docs and notes

4 lines of code changed in 1 file:

sbu062 2017-09-28 14:37 Rev.: 5568

(lifecycle_preevol): cleanup and fix docs and notes

32 lines of code changed in 1 file:

sbu062 2017-09-28 14:16

(lifecycle_preevol): cleanup and fix docs and notes

12 lines of code changed in 2 files:

sbu062 2017-09-28 14:08 Rev.: 5565

(lifecycle_preevol): cleanup and fix docs and notes

43 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5564

(lifecycle_preevol): more fixes, GA for preevol is almost here

22 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5563

(lifecycle_preevol): fixes here and there

5 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5562

(lifecycle_preevol): fixed correct population object

12 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5561

LIFECYCLE_PREEVOL loop isolated to inner subroutine (lifecycle_preevol)

74 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5560

(generations_loop_ga): implemented genetic algorithm for the pre-evolution stage

103 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5559

debug: deleted call to (life_cycles_debug_test) debugging proc

0 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5558

delete obsolete stopwatch

2 lines of code changed in 1 file:

sbu062 2017-09-28 13:41 Rev.: 5557

debug: deleted debug code

0 lines of code changed in 1 file:

sbu062 2017-09-28 11:02 Rev.: 5556

add to gnuplot code

2 lines of code changed in 1 file:

sbu062 2017-09-28 11:02 Rev.: 5555

extend gnuplot code

3 lines of code changed in 1 file:

sbu062 2017-09-28 09:38 Rev.: 5554

extend gnuplot code

4 lines of code changed in 1 file:

sbu062 2017-09-28 09:32 Rev.: 5553

doc: format

10 lines of code changed in 1 file:

sbu062 2017-09-28 09:32 Rev.: 5552

doc: typo

1 lines of code changed in 1 file:

sbu062 2017-09-28 09:31 Rev.: 5551

(save_dynamics): numbering glitch fix

9 lines of code changed in 1 file:

sbu062 2017-09-28 09:28 Rev.: 5550

(save_dynamics): add gnuplot code, numbered list

25 lines of code changed in 1 file:

sbu062 2017-09-28 09:00 Rev.: 5549

delete obsolete comments

6 lines of code changed in 1 file:

sbu062 2017-09-28 08:59 Rev.: 5548

doc: list

5 lines of code changed in 1 file:

sbu062 2017-09-28 08:56 Rev.: 5547

doc: fix level

1 lines of code changed in 1 file:

sbu062 2017-09-28 08:50 Rev.: 5546

doc: reformat and add

9 lines of code changed in 1 file:

sbu062 2017-09-28 08:44 Rev.: 5545

(save_dynamics) now not type-bound; csv_file_name renamed for consistency; (init_environment_objects): revised initial data save

31 lines of code changed in 1 file:

sbu062 2017-09-28 08:44 Rev.: 5544

(init_environment_objects): delete obsolete stopwatches, known to be fast

0 lines of code changed in 1 file:

sbu062 2017-09-28 08:44 Rev.: 5543

(habitat_save_diagnostic_dynamics): more comments

4 lines of code changed in 1 file:

cje012 2017-09-28 06:44 Rev.: 5542

Added plots for hormone levels given environment and reserve category , when the individuals are half way to max length.

31 lines of code changed in 1 file:

sbu062 2017-09-28 05:03 Rev.: 5541

doc: small fix

1 lines of code changed in 1 file:

sbu062 2017-09-28 05:00 Rev.: 5540

(habitat_save_diagnostic_dynamics): added visual range for average food item

68 lines of code changed in 1 file:

sbu062 2017-09-27 19:54

reformat

3 lines of code changed in 2 files:

sbu062 2017-09-27 19:54 Rev.: 5537

renamed interface name, (migrate_vertical) seems more specific

1 lines of code changed in 1 file:

sbu062 2017-09-27 19:54 Rev.: 5536

(habitat_save_diagnostic_dynamics): addes maxdepth optional param; fix string length mismatch in array constructor on gnu gfortran (worked ok on ifort)

19 lines of code changed in 1 file:

sbu062 2017-09-27 16:00 Rev.: 5535

(habitat_save_diagnostic_dynamics): fix record length

2 lines of code changed in 1 file:

sbu062 2017-09-27 15:54 Rev.: 5534

(habitat_save_diagnostic_dynamics): list of columns

9 lines of code changed in 1 file:

sbu062 2017-09-27 15:48 Rev.: 5533

debug code

9 lines of code changed in 1 file:

sbu062 2017-09-27 15:48 Rev.: 5532

(habitat_save_diagnostic_dynamics): fixes and more data seva

30 lines of code changed in 1 file:

sbu062 2017-09-27 15:03 Rev.: 5531

(habitat_save_diagnostic_dynamics): save deterministic diagnostic data on time steps

67 lines of code changed in 1 file:

sbu062 2017-09-27 14:26 Rev.: 5530

explicit real conversion

2 lines of code changed in 1 file:

sbu062 2017-09-27 14:26 Rev.: 5529

fix multiplier to reach smaller depth at minimum

1 lines of code changed in 1 file:

sbu062 2017-09-27 12:56 Rev.: 5528

(center_depth_regular) renamed to (center_depth_sinusoidal)

4 lines of code changed in 1 file:

sbu062 2017-09-27 12:39

doc: small fix

5 lines of code changed in 2 files:

sbu062 2017-09-27 12:31 Rev.: 5525

public interface (do_migrate); doc: small notes

6 lines of code changed in 1 file:

sbu062 2017-09-27 12:25 Rev.: 5524

doc: small fix

2 lines of code changed in 1 file:

sbu062 2017-09-27 12:25 Rev.: 5523

(center_depth_regular): procedure further isolated to be able to produce diagnostic calls, verbatim code added to comments

36 lines of code changed in 1 file:

sbu062 2017-09-27 12:25 Rev.: 5522

(food_resource_migrate_move_items): avoid calling (find_environment) for each food item, it is the same as they are nested within habitat

13 lines of code changed in 1 file:

sbu062 2017-09-27 12:25 Rev.: 5521

(food_resource_migrate_move_items): implements vertical migration of food items, based onj HED18 code

147 lines of code changed in 1 file:

sbu062 2017-09-26 15:39 Rev.: 5520

(life_cycles_time_step) now obsolete

0 lines of code changed in 1 file:

sbu062 2017-09-26 15:29 Rev.: 5519

debug: delete temporary debug code

2 lines of code changed in 1 file:

sbu062 2017-09-26 15:22 Rev.: 5518

doc: added

5 lines of code changed in 1 file:

sbu062 2017-09-26 15:22 Rev.: 5517

typo

1 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5516

doc: fix docs and reformat

15 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5515

(population_subject_individual_risk_mortality): individually-specific gaussian mortality procedure

16 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5514

(population_subject_other_risks): fix call to (dies), only one agent must die

1 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5513

(population_save_data_all_agents_csv): save also individual mortality

29 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5512

(get_mortality): accessor for individually specific mortality risk

4 lines of code changed in 1 file:

sbu062 2017-09-26 14:44 Rev.: 5511

individually-specific Gaussian mortality risk, accessor function and init procedure

37 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5510

(population_subject_other_risks): procedure for habitat-specific mortality ready, renamed (attack) to (attacked)

39 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5509

(get_mortality), (get_egg_mort): additional accessors

61 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5508

fixed predation risk: parameter is also obsolete

0 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5507

fixed predation risk is long obsolete, deleted, also deleted from (init)

5 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5506

ARCHITECTURE_NEURO, delete obsolete bundles

0 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5505

debug: redo duplicate name block

4 lines of code changed in 1 file:

sbu062 2017-09-26 13:55 Rev.: 5504

debug: duplicate name block

2 lines of code changed in 1 file:

sbu062 2017-09-26 13:54 Rev.: 5503

debug: debug code, additional logging, save data

17 lines of code changed in 1 file:

sbu062 2017-09-26 13:54 Rev.: 5502

debug code, small popsize for test

16 lines of code changed in 1 file:

sbu062 2017-09-26 13:54 Rev.: 5501

(lifecycle_step): public interface

4 lines of code changed in 1 file:

sbu062 2017-09-26 13:54 Rev.: 5500

(population_lifecycle_step_preevol): reformat, typo

3 lines of code changed in 1 file:

sbu062 2017-09-26 11:29 Rev.: 5499

(population_lifecycle_step_preevol): small fixes in doc

20 lines of code changed in 1 file:

sbu062 2017-09-26 11:16 Rev.: 5498

(population_lifecycle_step_preevol): documenting done

45 lines of code changed in 1 file:

sbu062 2017-09-26 10:56 Rev.: 5497

(population_lifecycle_step_preevol): writing docs

50 lines of code changed in 1 file:

sbu062 2017-09-25 18:11 Rev.: 5496

(population_lifecycle_step_preevol): note on arbitrary ordering; ordering indexer renamed to 'inds_order'

12 lines of code changed in 1 file:

sbu062 2017-09-25 13:17 Rev.: 5495

(population_lifecycle_step_preevol): now almost ready, need more doc on steps

56 lines of code changed in 1 file:

sbu062 2017-09-25 13:17 Rev.: 5494

(individual_agent_lifecycle_step): not feasible as we need population not available at this level; (population_lifecycle_step_preevol) continued

49 lines of code changed in 1 file:

sbu062 2017-09-25 13:17 Rev.: 5493

(individual_agent_lifecycle_step): skeleton

27 lines of code changed in 1 file:

sbu062 2017-09-25 13:17 Rev.: 5492

deleted obsolete timers; (population_life_cycle_step_preevol) skeleton

25 lines of code changed in 1 file:

sbu062 2017-09-25 13:17 Rev.: 5491

(individual_preevol_fitness_calc): explicit integer conversion

6 lines of code changed in 1 file:

sbu062 2017-09-25 06:19

doc: doc small change

4 lines of code changed in 2 files:

sbu062 2017-09-25 06:19 Rev.: 5488

doc: gnuplot code

10 lines of code changed in 1 file:

sbu062 2017-09-23 09:51 Rev.: 5487

doc link to devstats

5 lines of code changed in 1 file:

sbu062 2017-09-23 09:45 Rev.: 5486

doc link to devstats

2 lines of code changed in 1 file:

sbu062 2017-09-22 21:42 Rev.: 5485

pre-evolution and cleanup up to call to (life_cycles_debug_test)

22 lines of code changed in 1 file:

sbu062 2017-09-22 21:41 Rev.: 5484

doc: rearrange, group for GA parameters

13 lines of code changed in 1 file:

sbu062 2017-09-22 21:41 Rev.: 5483

deleting obsolete proto_ objects: GA_MUTATIONRATE; fix stopwatches in GA; fic (mutation) call

9 lines of code changed in 1 file:

sbu062 2017-09-22 21:41 Rev.: 5482

(genome_mutate_wrapper): placed to public interface, fix comments

5 lines of code changed in 1 file:

sbu062 2017-09-22 21:41 Rev.: 5481

deleting obsolete proto_ objects: (proto_genome_mutate)

3 lines of code changed in 1 file:

sbu062 2017-09-22 21:41 Rev.: 5480

(genome_mutate_wrapper): mutation rate is set within each respective component procedure, no need to check probability here; procedure ready

46 lines of code changed in 1 file:

sbu062 2017-09-22 19:46 Rev.: 5479

raise nutation rate

2 lines of code changed in 1 file:

sbu062 2017-09-22 19:41 Rev.: 5478

(population_save_data_all_agents_csv): added fitness to list of output attributes

3 lines of code changed in 1 file:

sbu062 2017-09-22 17:45 Rev.: 5477

raise nutation rate

1 lines of code changed in 1 file:

sbu062 2017-09-22 17:45 Rev.: 5476

(genome_mutate_wrapper): point mutation inserted

7 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5475

started (genome_mutate_wrapper)

35 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5474

deleting obsolete proto_ objects: (proto_calculate_fitness_population)

0 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5473

fitness is actually the reverse, anti-fitness, in the pre-evolution phase

13 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5472

started deleting obsolete proto_ objects: (proto_fitness_calculate), restored best fitness criterion in do while

4 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5471

renamed (fitness) to (fitness_calc)

5 lines of code changed in 1 file:

sbu062 2017-09-22 15:46 Rev.: 5470

fitness procedures for preevolution phase of GA: (individual_preevol_fitness_calc) and (population_preevol_fitness_calc)

31 lines of code changed in 1 file:

sbu062 2017-09-22 15:45 Rev.: 5469

(individual_preevol_fitness_calc): individual fitness for the preevolution phase of GA

30 lines of code changed in 1 file:

sbu062 2017-09-22 13:09 Rev.: 5468

debug code: deleted fully DEBUG_PREDATORS blocks

0 lines of code changed in 1 file:

sbu062 2017-09-22 12:32 Rev.: 5467

(population_subject_predator_attack): do not try to eat dead zombies

11 lines of code changed in 1 file:

sbu062 2017-09-22 12:21 Rev.: 5466

debug code disabled

44 lines of code changed in 1 file:

sbu062 2017-09-22 12:21 Rev.: 5465

(population_subject_predator_attack): delete debug code and annoying logging

0 lines of code changed in 1 file:

sbu062 2017-09-22 12:21 Rev.: 5464

(population_subject_predator_attack): more debug code

22 lines of code changed in 1 file:

sbu062 2017-09-22 12:03 Rev.: 5463

(predator_capture_risk_calculate_fish_group): fix output array sizes, check minimum size array for output, standard index array size equal to partial index size PREDATOR_RISK_GROUP_SELECT_INDEX_PARTIAL; enabled debug code for raw probability of attack in group

50 lines of code changed in 1 file:

sbu062 2017-09-22 11:10 Rev.: 5462

debug code, added timer

5 lines of code changed in 1 file:

sbu062 2017-09-22 11:09 Rev.: 5461

forgotten debug flags for gfortran on windows, it is now separate

1 lines of code changed in 1 file:

sbu062 2017-09-22 11:04 Rev.: 5460

(spatial_neighbours_distances): note now obsolete, do concurrent disabled still keeping

0 lines of code changed in 1 file:

sbu062 2017-09-22 11:02 Rev.: 5459

(spatial_neighbours_distances): whole array operation is legitimate as (distance) is now elemental function

4 lines of code changed in 1 file:

sbu062 2017-09-22 10:50 Rev.: 5458

compiler bug: did workaround against gfortran bug, loss of Fortran specific array indexing from 1 to C-specific from 0

12 lines of code changed in 1 file:

sbu062 2017-09-22 10:50 Rev.: 5457

(population_subject_predator_attack): fix logging; debug code for (attack) method

25 lines of code changed in 1 file:

sbu062 2017-09-22 10:50 Rev.: 5456

(population_subject_predator_attack): fixed index

9 lines of code changed in 1 file:

sbu062 2017-09-22 10:50 Rev.: 5455

debug: debug code for (risk_fish_group) with two output indexing schemes

14 lines of code changed in 1 file:

sbu062 2017-09-21 20:59 Rev.: 5454

(predator_capture_risk_calculate_fish_group) cleanup and doc, procedure ready

36 lines of code changed in 1 file:

sbu062 2017-09-21 20:59 Rev.: 5453

(predator_capture_risk_calculate_fish_group) doc writing

37 lines of code changed in 1 file:

sbu062 2017-09-21 19:14 Rev.: 5452

(predator_capture_risk_calculate_fish_group) added two indexing schemes, fix debug code

59 lines of code changed in 1 file:

sbu062 2017-09-21 19:14 Rev.: 5451

debug: (predator_capture_risk_calculate_fish_group) added raw unindexed array

14 lines of code changed in 1 file:

sbu062 2017-09-21 16:00 Rev.: 5450

debug: debug code for (risk_fish_group)

29 lines of code changed in 1 file:

sbu062 2017-09-21 14:21 Rev.: 5449

(population_subject_predator_attack): procedure ready, with public interface

48 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5448

(predator_capture_risk_calculate_fish_group): return index array

5 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5447

(predator_capture_risk_calculate_fish_group): added index array to parameter list

9 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5446

(predator_capture_risk_calculate_fish_group): converted to subroutine, need index array too

31 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5445

(population_subject_predator_attack): skeleton continue

41 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5444

activate is_active flag on each behaviour execution

50 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5443

(deactivate) method for behaviour

31 lines of code changed in 1 file:

sbu062 2017-09-21 13:10 Rev.: 5442

init 'is_active' for all behaviours to FALSE

45 lines of code changed in 1 file:

sbu062 2017-09-21 13:09 Rev.: 5441

(behaviour_root_get_is_executed): now elemental

1 lines of code changed in 1 file:

sbu062 2017-09-21 13:09 Rev.: 5440

(is_executed) accessor func for is_active

20 lines of code changed in 1 file:

sbu062 2017-09-21 13:09 Rev.: 5439

(population_subject_predator_attack): initial skeleton at POPULATION class

42 lines of code changed in 1 file:

sbu062 2017-09-21 13:09 Rev.: 5438

(chase): deleted prototype, it should be further upwards in the class hierarchy

0 lines of code changed in 1 file:

sbu062 2017-09-21 09:33 Rev.: 5437

doc:small changes

2 lines of code changed in 1 file:

sbu062 2017-09-21 09:33 Rev.: 5436

lower threshold for reproduction 'SEX_STEROIDS_REPRODUCTION_THRESHOLD'

1 lines of code changed in 1 file:

sbu062 2017-09-21 08:12 Rev.: 5435

doc: doxy cleanup, links to procs

8 lines of code changed in 1 file:

sbu062 2017-09-21 08:12 Rev.: 5434

add p. reproduction to agent csv save

29 lines of code changed in 1 file:

sbu062 2017-09-21 08:12 Rev.: 5433

added living cost to save population csv proc, fix living cost doxygen formula

31 lines of code changed in 1 file:

sbu062 2017-09-21 08:12 Rev.: 5432

(sex_steroids_update_increment): steroids increment by age

2 lines of code changed in 1 file:

sbu062 2017-09-20 17:33 Rev.: 5431

doc: small cleanups

5 lines of code changed in 1 file:

sbu062 2017-09-20 14:20 Rev.: 5430

doc: FOOD_ITEM_SIZE_DEFAULT corresponds to 0.09 maxstomcap, more explanations on the parameter

5 lines of code changed in 1 file:

sbu062 2017-09-20 14:13 Rev.: 5429

(population_save_data_all_agents_csv): file write failure logged

4 lines of code changed in 1 file:

sbu062 2017-09-20 13:15 Rev.: 5428

debug: food item mass 0.1 agent bodt mass, i.e. smaller than maxstomcap, mean fully fitting

3 lines of code changed in 1 file:

sbu062 2017-09-20 11:45 Rev.: 5427

MMDD protected, zero timer checks against TOLERANCE_LOW_DEF_SRP; doc: small fixes and chenges;

46 lines of code changed in 2 files:

sbu062 2017-09-19 21:18 Rev.: 5426

debug: full popsize for debug

1 lines of code changed in 1 file:

sbu062 2017-09-19 21:18 Rev.: 5425

debug: small changes

1 lines of code changed in 1 file:

sbu062 2017-09-19 21:18 Rev.: 5424

debug: calculate mean food item size equal to maxstomcap

12 lines of code changed in 1 file:

sbu062 2017-09-19 18:34 Rev.: 5423

debug: added food item mass to csv output

4 lines of code changed in 1 file:

sbu062 2017-09-19 16:59 Rev.: 5422

debug: gaussian depth at 5

2 lines of code changed in 1 file:

sbu062 2017-09-19 16:52 Rev.: 5421

debug: increase food size

1 lines of code changed in 1 file:

sbu062 2017-09-19 16:00 Rev.: 5420

init: depth initialisation xchecks for environment limits, additional logging

36 lines of code changed in 1 file:

sbu062 2017-09-19 15:10 Rev.: 5419

init: options to initialise agents at a Gaussian depth

33 lines of code changed in 1 file:

sbu062 2017-09-19 15:10 Rev.: 5418

init: options to initialise agents at a fixed depth

23 lines of code changed in 1 file:

sbu062 2017-09-19 13:25 Rev.: 5417

debug: small changes

1 lines of code changed in 1 file:

sbu062 2017-09-19 13:17 Rev.: 5416

small changes and formats

6 lines of code changed in 1 file:

sbu062 2017-09-19 13:04 Rev.: 5415

debug: debug reports (cost_swim_std)

6 lines of code changed in 1 file:

sbu062 2017-09-19 11:24 Rev.: 5414

(cost_swim_std): now elemental

1 lines of code changed in 1 file:

sbu062 2017-09-19 11:24 Rev.: 5413

added (cost_swim_std) to population save csv output

26 lines of code changed in 1 file:

sbu062 2017-09-19 11:18 Rev.: 5412

(cost_swim_std): diagnostic function for standard cost of swimming

33 lines of code changed in 1 file:

sbu062 2017-09-19 10:52 Rev.: 5411

debug: debug code for food items P capture, visual range, standard cos of swimming

43 lines of code changed in 1 file:

cje012 2017-09-19 08:55 Rev.: 5410

Removed small error in the old script.

3 lines of code changed in 1 file:

sbu062 2017-09-18 17:54 Rev.: 5409

debug: shorter limits

2 lines of code changed in 1 file:

sbu062 2017-09-18 17:47 Rev.: 5408

(behaviour_select_optimal): check conspecifics and maturation for execute method of 'reproduce', very big expected arousal otherwise

9 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5407

(sex_steroids_update_increment): adde steroids to history stack if not incremented

5 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5406

(reproduce_do_this): sex steroids cannot be lower than baseline

14 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5405

(reproduce_do_execute): sex steroids cannot be lower than baseline

12 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5404

debug: update sex steroids and living cost

10 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5403

(behaviour_select_optimal): check maturity condition to execute 'reproduce' behaviour

5 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5402

(reproduce_do_this): rename block more logical

2 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5401

(reproduce_do_probability_reproduction_calc): named construct tag

2 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5400

(reproduce_do_probability_reproduction_calc): added logging

3 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5399

(population_save_data_all_agents_csv): save baseline sex steroids

24 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5398

doc: note

1 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5397

fix value SEX_STEROIDS_REPRODUCTION_THRESHOLD

1 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5396

(is_ready_reproduce) method; modified (probability_reproduction) and (reproduce_do_this) to check if agent is ready

97 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5395

use tolerance in increment method (sex_steroids_update_increment)

1 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5394

doc: note on sex steroids update history func

9 lines of code changed in 1 file:

sbu062 2017-09-18 15:52 Rev.: 5393

(hormones_to_history): done small update proc

20 lines of code changed in 1 file:

cje012 2017-09-18 14:10 Rev.: 5392

Added plots for hormone levels against environment.

94 lines of code changed in 1 file:

cje012 2017-09-18 13:59 Rev.: 5391

Changed initiation of the ind array from 0 to -1000 to be able to filter better in the plotting script and for cleaner plots.

3 lines of code changed in 1 file:

sbu062 2017-09-18 12:07 Rev.: 5390

debug: logging steroid history

6 lines of code changed in 1 file:

sbu062 2017-09-18 12:07 Rev.: 5389

doc: reformat

4 lines of code changed in 1 file:

sbu062 2017-09-18 11:50 Rev.: 5388

debug code deleted

0 lines of code changed in 1 file:

sbu062 2017-09-18 11:49 Rev.: 5387

doc: reformat

7 lines of code changed in 1 file:

sbu062 2017-09-18 11:43 Rev.: 5386

doc: logger note

4 lines of code changed in 1 file:

sbu062 2017-09-18 11:38 Rev.: 5385

doc: small fix

4 lines of code changed in 1 file:

sbu062 2017-09-18 11:31 Rev.: 5384

everything is private in FILE_IO

5 lines of code changed in 1 file:

sbu062 2017-09-18 11:24 Rev.: 5383

doc: links

12 lines of code changed in 1 file:

sbu062 2017-09-18 11:24 Rev.: 5382

doc: small fix

1 lines of code changed in 1 file:

sbu062 2017-09-18 11:17

doc: small change

6 lines of code changed in 2 files:

sbu062 2017-09-18 11:10 Rev.: 5379

trivial accessors for format, debug code for txt files, code example

75 lines of code changed in 1 file:

sbu062 2017-09-18 10:41 Rev.: 5378

doc: headers

8 lines of code changed in 1 file:

sbu062 2017-09-18 08:45 Rev.: 5377

doc: headers

30 lines of code changed in 1 file:

sbu062 2017-09-18 08:31 Rev.: 5376

doc: headers

12 lines of code changed in 1 file:

sbu062 2017-09-17 17:42 Rev.: 5375

more notes

6 lines of code changed in 1 file:

sbu062 2017-09-17 17:13 Rev.: 5374

small changes, all default objects now private, added examples

51 lines of code changed in 1 file:

sbu062 2017-09-17 07:03 Rev.: 5373

doc: added link

3 lines of code changed in 1 file:

sbu062 2017-09-17 06:54 Rev.: 5372

doc: added link

2 lines of code changed in 1 file:

sbu062 2017-09-17 06:50 Rev.: 5371

doc: allocatable record string in the example code

10 lines of code changed in 1 file:

sbu062 2017-09-16 19:38 Rev.: 5370

doc: small fix

4 lines of code changed in 1 file:

sbu062 2017-09-16 19:32 Rev.: 5369

doc: note on allocatable character component "published", link added

9 lines of code changed in 1 file:

sbu062 2017-09-16 19:28 Rev.: 5368

doc: note on allocatable character component and non-implementation of record into the FILE_HANDLE class

7 lines of code changed in 1 file:

sbu062 2017-09-16 18:43

doc: small fixes

4 lines of code changed in 2 files:

sbu062 2017-09-16 18:37 Rev.: 5365

doc: small fixes

5 lines of code changed in 1 file:

sbu062 2017-09-16 18:33 Rev.: 5364

FILE_IO: deleted debug code

0 lines of code changed in 1 file:

sbu062 2017-09-16 18:33 Rev.: 5363

FILE_IO: debug code, example doc

78 lines of code changed in 1 file:

sbu062 2017-09-16 18:33 Rev.: 5362

(open_write): fixes

5 lines of code changed in 1 file:

sbu062 2017-09-16 18:33 Rev.: 5361

(open_write): functionality from (define) moved here

39 lines of code changed in 1 file:

sbu062 2017-09-16 13:46 Rev.: 5360

doc: small fixes

2 lines of code changed in 1 file:

sbu062 2017-09-16 13:46 Rev.: 5359

(record_write) method done

22 lines of code changed in 1 file:

sbu062 2017-09-16 13:27 Rev.: 5358

(close) method for files

18 lines of code changed in 1 file:

sbu062 2017-09-16 13:15 Rev.: 5357

(file_hangle_get_name_string): set false success flag on undefined name

4 lines of code changed in 1 file:

sbu062 2017-09-16 13:10 Rev.: 5356

doc: small fixes

4 lines of code changed in 1 file:

sbu062 2017-09-16 13:10 Rev.: 5355

(get_name) returns allocatable string

1 lines of code changed in 1 file:

sbu062 2017-09-16 13:09 Rev.: 5354

(get_name) method fof file object

14 lines of code changed in 1 file:

sbu062 2017-09-16 12:55 Rev.: 5353

doc: small fixes

2 lines of code changed in 1 file:

sbu062 2017-09-16 12:55 Rev.: 5352

(get_unit) method for file object

19 lines of code changed in 1 file:

sbu062 2017-09-16 12:55 Rev.: 5351

(define) method for file object

57 lines of code changed in 1 file:

sbu062 2017-09-16 11:53 Rev.: 5350

FILE_IO: added options to support for other file formats other than csv

15 lines of code changed in 1 file:

sbu062 2017-09-16 11:33

doc: small fixes

24 lines of code changed in 2 files:

sbu062 2017-09-16 11:28 Rev.: 5347

doc: small fixes

24 lines of code changed in 1 file:

sbu062 2017-09-16 11:14 Rev.: 5346

doc: small fixes

5 lines of code changed in 1 file:

sbu062 2017-09-16 11:08 Rev.: 5345

FILE_IO: started a module that should provide an unitary interface for all file operations

71 lines of code changed in 1 file:

sbu062 2017-09-16 07:54 Rev.: 5344

doc: added links

11 lines of code changed in 1 file:

sbu062 2017-09-16 07:10 Rev.: 5343

more info in error log

4 lines of code changed in 1 file:

sbu062 2017-09-15 20:14 Rev.: 5342

(migrate_do_execute): log in debug only, too many warnings

2 lines of code changed in 1 file:

sbu062 2017-09-15 20:09 Rev.: 5341

(migrate_do_this): log in debug only, too many warnings

2 lines of code changed in 1 file:

sbu062 2017-09-15 19:56 Rev.: 5340

stdout call is forgotten obsolete

0 lines of code changed in 1 file:

sbu062 2017-09-15 19:53 Rev.: 5339

reduced POPSIZE to 1000, was 10000

1 lines of code changed in 1 file:

sbu062 2017-09-15 19:52 Rev.: 5338

debug: use full POPSIZE instead of 20 individuals

1 lines of code changed in 1 file:

sbu062 2017-09-15 19:14 Rev.: 5337

doc: small addition

2 lines of code changed in 1 file:

sbu062 2017-09-15 18:45 Rev.: 5336

doc: more info

4 lines of code changed in 1 file:

sbu062 2017-09-15 18:41 Rev.: 5335

doc: small fix

3 lines of code changed in 1 file:

sbu062 2017-09-15 18:36 Rev.: 5334

doc: more info for parallel mode

6 lines of code changed in 1 file:

sbu062 2017-09-15 18:22 Rev.: 5333

doc: rudimentary info for parallel mode

7 lines of code changed in 1 file:

sbu062 2017-09-15 18:15 Rev.: 5332

doc: extended info on the debug mode

42 lines of code changed in 1 file:

sbu062 2017-09-15 17:43 Rev.: 5331

debug: more steps, full lifespan

1 lines of code changed in 1 file:

sbu062 2017-09-15 17:43 Rev.: 5330

doc: fix small

2 lines of code changed in 1 file:

sbu062 2017-09-15 17:10 Rev.: 5329

doc: fix small

2 lines of code changed in 1 file:

sbu062 2017-09-15 17:05 Rev.: 5328

doc: fix tag

1 lines of code changed in 1 file:

sbu062 2017-09-15 17:02 Rev.: 5327

doc: controlling logger

14 lines of code changed in 1 file:

sbu062 2017-09-15 14:26 Rev.: 5326

debug: standard logger for debugging screen outputs; set long delimiters

16 lines of code changed in 1 file:

sbu062 2017-09-15 14:26 Rev.: 5325

cleanup code, if conditions long obsolete

1 lines of code changed in 1 file:

sbu062 2017-09-15 13:56 Rev.: 5324

debug: print ind helps check in long runs

2 lines of code changed in 1 file:

sbu062 2017-09-15 13:38 Rev.: 5323

chenge default walk parameters: longer default walk step, hope parameters, WALK_RANDOM_FOOD_GAIN_HOPE_AGENTL much increased because average distance to food items in perception is often around 40 agent's SL, hope function-based calculations should be much further; deleted temporary file writing code

12 lines of code changed in 1 file:

sbu062 2017-09-15 13:38 Rev.: 5322

debug: write mean distance to foods and SL to file

3 lines of code changed in 1 file:

sbu062 2017-09-15 12:57 Rev.: 5321

added more logging

13 lines of code changed in 1 file:

sbu062 2017-09-15 12:39 Rev.: 5320

fixed logging

14 lines of code changed in 1 file:

sbu062 2017-09-15 12:24 Rev.: 5319

fixed logging

1 lines of code changed in 1 file:

sbu062 2017-09-15 12:20 Rev.: 5318

added more logging

4 lines of code changed in 1 file:

sbu062 2017-09-15 12:07 Rev.: 5317

added more logging

12 lines of code changed in 1 file:

sbu062 2017-09-15 10:56 Rev.: 5316

added more logging

5 lines of code changed in 1 file:

sbu062 2017-09-15 09:25

auditing dimensionality parameter arrays: delete obsolete parameters

68 lines of code changed in 3 files:

sbu062 2017-09-15 09:25 Rev.: 5312

fix string length must be same in gfortran; auditing dimensionality parameter arrays: delete obsolete parameters

3 lines of code changed in 1 file:

sbu062 2017-09-15 09:25 Rev.: 5311

raised limit on walk_random: WALK_RANDOM_FOOD_GAIN_HOPE_AGENTL; started auditing dimensionality parameter arrays: delete obsolete parameters

20 lines of code changed in 1 file:

sbu062 2017-09-15 09:25 Rev.: 5310

(system_init): check TEST_AUTO_PARAM_ARRAYS

30 lines of code changed in 1 file:

sbu062 2017-09-15 06:33 Rev.: 5309

debug: shorter lifespan, global time step increment disabled for high light

2 lines of code changed in 1 file:

sbu062 2017-09-15 06:31 Rev.: 5308

(population_save_data_all_agents_csv): added average perceptions (N foods, conspecifics, predators)

14 lines of code changed in 1 file:

sbu062 2017-09-14 19:58 Rev.: 5307

changed hope function parameters for migrate

4 lines of code changed in 1 file:

sbu062 2017-09-14 19:44 Rev.: 5306

changed hope function parameters for walk_random, minimum hope zero rather than 0.7

4 lines of code changed in 1 file:

sbu062 2017-09-14 17:23 Rev.: 5305

doc: fix small

1 lines of code changed in 1 file:

sbu062 2017-09-14 17:20 Rev.: 5304

doc: fix links

6 lines of code changed in 1 file:

sbu062 2017-09-14 17:16 Rev.: 5303

doc: fix link to inner func

1 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5302

(subjective_capture_prob): refactor subjective probability calculation using (within) func

5 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5301

(food_perception_probability_capture_memory_object): added stochastic subjective error; logger code reformatted

19 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5300

(go_up_do_this): weight expected food gain by subjective probability of capture

41 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5299

(go_down_do_this): weight expected food gain by subjective probability of capture

45 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5298

(migrate_do_this): weight expected food gain by subjective probability of capture

6 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5297

approach_conspec, (do_this): weight expected food gain by subjective probability of capture

36 lines of code changed in 1 file:

sbu062 2017-09-14 17:09 Rev.: 5296

(walk_random_do_this): weight expected food gain by subjective probability of capture

14 lines of code changed in 1 file:

sbu062 2017-09-14 15:25 Rev.: 5295

(food_item_capture_probability_calc): debug plot add random string file name avoids overwriting with subjective items; debug code

6 lines of code changed in 1 file:

sbu062 2017-09-14 14:47 Rev.: 5294

debug code

2 lines of code changed in 1 file:

sbu062 2017-09-14 14:47 Rev.: 5293

(food_perception_probability_capture_memory_object): public interface (food_probability_capture_subjective); added doc description

23 lines of code changed in 1 file:

sbu062 2017-09-14 14:47 Rev.: 5292

(food_perception_probability_capture_memory_object): prpbability of capture of idealised subjective representation food item, based on memory stack (average item size and average distance)

52 lines of code changed in 1 file:

sbu062 2017-09-14 13:28 Rev.: 5291

doc: cleanup; rename return function vars 'mean_count' more logically 'mean_val'

14 lines of code changed in 1 file:

sbu062 2017-09-14 13:17 Rev.: 5290

added memory for the average distance to food items 'memory_foodist' to MEMORY_PERCEPTUAL class; updated code; debug code

184 lines of code changed in 1 file:

sbu062 2017-09-14 13:17 Rev.: 5289

doc: small change

1 lines of code changed in 1 file:

sbu062 2017-09-14 13:17 Rev.: 5288

debug: fix logging

7 lines of code changed in 1 file:

sbu062 2017-09-14 13:17 Rev.: 5287

debug: fix ratio zero values in logging

17 lines of code changed in 1 file:

sbu062 2017-09-14 10:56 Rev.: 5286

debug: more logging

5 lines of code changed in 1 file:

sbu062 2017-09-14 10:35

doc: small note

8 lines of code changed in 2 files:

sbu062 2017-09-14 10:35 Rev.: 5283

'n_eat_attempts_indicator' renamed shorter; save indicators in (population_save_data_all_agents_csv)

15 lines of code changed in 1 file:

sbu062 2017-09-14 10:35 Rev.: 5282

'n_eat_attempts_indicator' for the BEHAVIOUR class, increment indiccators in (behaviour_do_eat_food_item)

13 lines of code changed in 1 file:

sbu062 2017-09-14 10:35 Rev.: 5281

(behaviour_do_eat_food_item): request optional parameter 'eat_is_success'

5 lines of code changed in 1 file:

sbu062 2017-09-14 10:35 Rev.: 5280

(eat_food_item_do_execute): added optional eat success indicator, log agent death here; named parameters in (execute) call

21 lines of code changed in 1 file:

sbu062 2017-09-14 10:35 Rev.: 5279

(init_behaviour): added init method, added debugging indicators section

27 lines of code changed in 1 file:

sbu062 2017-09-14 07:49 Rev.: 5278

debug: check dead

2 lines of code changed in 1 file:

sbu062 2017-09-13 22:24 Rev.: 5277

debug: more steps

1 lines of code changed in 1 file:

sbu062 2017-09-13 22:05 Rev.: 5276

(population_save_data_all_agents_csv): added birth mass

28 lines of code changed in 1 file:

sbu062 2017-09-13 21:46 Rev.: 5275

csv_file_name for compatibility

29 lines of code changed in 1 file:

sbu062 2017-09-13 21:46 Rev.: 5274

(population_save_data_all_agents_csv): added optional success indicator

6 lines of code changed in 1 file:

sbu062 2017-09-13 19:42 Rev.: 5273

doc: code tag

14 lines of code changed in 1 file:

sbu062 2017-09-13 19:37 Rev.: 5272

doc: try code tag

2 lines of code changed in 1 file:

sbu062 2017-09-13 19:32 Rev.: 5271

doc: small change

5 lines of code changed in 1 file:

sbu062 2017-09-13 19:02 Rev.: 5270

doc: shorter title

1 lines of code changed in 1 file:

sbu062 2017-09-13 18:42 Rev.: 5269

levels fixed

15 lines of code changed in 1 file:

sbu062 2017-09-13 18:38 Rev.: 5268

added environment vars

13 lines of code changed in 1 file:

sbu062 2017-09-13 18:34 Rev.: 5267

fix sublist levels

1 lines of code changed in 1 file:

sbu062 2017-09-13 18:27 Rev.: 5266

formats fixed

28 lines of code changed in 1 file:

sbu062 2017-09-13 18:27 Rev.: 5265

(population_save_data_all_agents_csv): enable default logging based on IS_DEBUG; added file write timer

9 lines of code changed in 1 file:

sbu062 2017-09-13 17:30 Rev.: 5264

disabled -flto as it seems to beak LOGGER module, global unit association is not retained, more testing needed

4 lines of code changed in 1 file:

sbu062 2017-09-13 17:30 Rev.: 5263

(behaviour_select_optimal) deleted optional behaviour_get, label functionality is now in the BEHASVIOUR class

3 lines of code changed in 1 file:

sbu062 2017-09-13 15:28 Rev.: 5262

debug: smaller steps

1 lines of code changed in 1 file:

sbu062 2017-09-13 15:28 Rev.: 5261

position variables renamed in csv

1 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5260

fixed logged label

1 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5259

debug code uses the getter (behaviour_is)

3 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5258

(behaviour_is): getter for behaviour_label

15 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5257

transfer/set label of the currently executed behaviour to the agent 'behaviour_label' data component in (do_) methods

34 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5256

added global behaviour_label for currently executed behaviour

3 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5255

(population_save_data_all_agents_csv): save gos repeat

7 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5254

(population_save_data_all_agents_csv): save gos arousal

7 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5253

(population_save_data_all_agents_csv): save gos label

2 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5252

(population_save_data_all_agents_csv): save also habitat name the agents are in

11 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5251

(population_save_data_all_agents_csv): add coordinates to output

7 lines of code changed in 1 file:

sbu062 2017-09-13 14:42 Rev.: 5250

(population_save_data_all_agents_csv): get rid of parameter N_COLUMNS in the body, use size()

4 lines of code changed in 1 file:

sbu062 2017-09-13 12:02 Rev.: 5249

(age_increment): subroutine

22 lines of code changed in 1 file:

cje012 2017-09-13 11:44 Rev.: 5248

Added new calculation of M_foraging: M_foraging = (fact * forag) + (coeff*(forag^exp))

2 lines of code changed in 1 file:

cje012 2017-09-13 11:44 Rev.: 5247

Added new parameter, M_foraging_fact, for new calculations of M_foragingin the form of M_foraging = (fact * forag) + (coeff*(forag^exp))

1 lines of code changed in 1 file:

cje012 2017-09-13 09:47 Rev.: 5246

Moved the importing of libraries to the top of the script.

4 lines of code changed in 1 file:

cje012 2017-09-13 09:46 Rev.: 5245

Added new compiler option for compiling to windows in linux.

6 lines of code changed in 1 file:

cje012 2017-09-13 09:45 Rev.: 5244

Added new and edited comments to containt references and explainations that is easier to understand.

14 lines of code changed in 1 file:

sbu062 2017-09-12 17:26 Rev.: 5243

reduce predation

2 lines of code changed in 1 file:

sbu062 2017-09-12 17:26 Rev.: 5242

reduced hope function parameters for 'migrate'

4 lines of code changed in 1 file:

sbu062 2017-09-12 17:26 Rev.: 5241

reduced initial values of sex hormones

2 lines of code changed in 1 file:

sbu062 2017-09-12 13:47 Rev.: 5240

disable all genetic modulation

1 lines of code changed in 1 file:

sbu062 2017-09-12 13:47 Rev.: 5239

more logging

42 lines of code changed in 1 file:

sbu062 2017-09-12 12:26 Rev.: 5238

tests: autoallocation, reformat with tab=2

83 lines of code changed in 1 file:

sbu062 2017-09-12 11:46 Rev.: 5237

doc: add template to procname

6 lines of code changed in 1 file:

sbu062 2017-09-12 11:37 Rev.: 5236

no optimisation in debug mode on Windows platform

3 lines of code changed in 1 file:

sbu062 2017-09-12 11:37 Rev.: 5235

(system_init): check autoallocation

28 lines of code changed in 1 file:

sbu062 2017-09-12 11:37 Rev.: 5234

doc:small fix

2 lines of code changed in 1 file:

sbu062 2017-09-12 09:57 Rev.: 5233

doc: fix link

2 lines of code changed in 1 file:

sbu062 2017-09-12 09:53 Rev.: 5232

doc: more links

9 lines of code changed in 1 file:

sbu062 2017-09-12 09:38 Rev.: 5231

doc: added link to intel forum documenting compiler bug

2 lines of code changed in 1 file:

sbu062 2017-09-12 06:50 Rev.: 5230

mderged from work branch

177 lines of code changed in 1 file:

sbu062 2017-09-11 20:55 Rev.: 5229

separate FFLAGS for gfortran on Windows platform, it does not tolerate -flto

7 lines of code changed in 1 file:

sbu062 2017-09-11 19:53 Rev.: 5228

note on windows link time optimisation in gfortran

2 lines of code changed in 1 file:

sbu062 2017-09-11 19:24 Rev.: 5227

fix compiler options for ifort on windows

2 lines of code changed in 1 file:

sbu062 2017-09-11 18:30 Rev.: 5226

additional logging

10 lines of code changed in 1 file:

sbu062 2017-09-11 18:30 Rev.: 5225

small fix

1 lines of code changed in 1 file:

sbu062 2017-09-11 18:29 Rev.: 5224

debug: snan init on windows

1 lines of code changed in 1 file:

sbu062 2017-09-11 18:29 Rev.: 5223

logger, fix format

7 lines of code changed in 1 file:

sbu062 2017-09-11 16:28 Rev.: 5222

more logging

76 lines of code changed in 1 file:

sbu062 2017-09-11 16:28 Rev.: 5221

format code whitespace only

118 lines of code changed in 1 file:

sbu062 2017-09-11 16:27 Rev.: 5220

more logging

136 lines of code changed in 1 file:

sbu062 2017-09-11 16:27 Rev.: 5219

debug_base behaviour unit is inserted into BEHAVIOUR class

37 lines of code changed in 1 file:

sbu062 2017-09-11 16:27 Rev.: 5218

added debug_base behaviout unit class for baseline motivation expectations for debugging, without any fake perceptions

253 lines of code changed in 1 file:

sbu062 2017-09-11 16:27 Rev.: 5217

small note

2 lines of code changed in 1 file:

sbu062 2017-09-11 12:25 Rev.: 5216

additional logging

22 lines of code changed in 1 file:

sbu062 2017-09-11 12:25 Rev.: 5215

(motivation_return_final_as_vector): returns allocatable wirh automatic allocation of intrinsic assignment, should work in ifort and gnu; log expectancy

6 lines of code changed in 1 file:

sbu062 2017-09-11 12:25 Rev.: 5214

add initialising with signalling NaNs (SNaN) on intel ifort debug mode

1 lines of code changed in 1 file:

sbu062 2017-09-11 10:27 Rev.: 5213

(reproduce_motivations_expect): logging primary motivations

12 lines of code changed in 1 file:

sbu062 2017-09-11 07:38 Rev.: 5212

fix logging

20 lines of code changed in 1 file:

sbu062 2017-09-11 07:38 Rev.: 5211

doc: link fix

5 lines of code changed in 1 file:

sbu062 2017-09-11 06:45 Rev.: 5210

more logging; enabled gentic sex modulation

23 lines of code changed in 1 file:

sbu062 2017-09-11 05:08 Rev.: 5209

doc link to asymptotic

2 lines of code changed in 1 file:

sbu062 2017-09-10 20:13 Rev.: 5208

doc: small fix

2 lines of code changed in 1 file:

sbu062 2017-09-10 20:06 Rev.: 5207

doc: small fix

3 lines of code changed in 1 file:

sbu062 2017-09-10 20:03 Rev.: 5206

doc: list plotting utils

6 lines of code changed in 1 file:

sbu062 2017-09-10 19:56 Rev.: 5205

doc: environ vars

26 lines of code changed in 1 file:

sbu062 2017-09-10 18:51 Rev.: 5204

delete unnecessary if (is_debug) condition if inside log_dbg is called; fixed renames of environment variables to have aha_ prefix

19 lines of code changed in 1 file:

sbu062 2017-09-10 18:20 Rev.: 5203

environment variables all have AHA_ prefix

29 lines of code changed in 1 file:

sbu062 2017-09-10 18:01

doc: more comments

17 lines of code changed in 2 files:

sbu062 2017-09-10 17:45 Rev.: 5200

doc: describe environment variables

13 lines of code changed in 1 file:

sbu062 2017-09-10 17:44 Rev.: 5199

IS_DEBUG false if environment variable DEBUG=NO

5 lines of code changed in 1 file:

sbu062 2017-09-10 16:47 Rev.: 5198

bug: workaround against intel ifort crashing on (execute_command_line): added environment variable AHA_CHECK_EXTERNALS to control checking externals

65 lines of code changed in 1 file:

sbu062 2017-09-10 16:06 Rev.: 5197

doc: additional notes on system call and execute_command_line

15 lines of code changed in 1 file:

sbu062 2017-09-10 15:51 Rev.: 5196

(system_init): visibility in log

2 lines of code changed in 1 file:

sbu062 2017-09-10 15:48 Rev.: 5195

(system_init): disable plotting if ANY of the external utilities is non-executable

6 lines of code changed in 1 file:

sbu062 2017-09-10 15:41 Rev.: 5194

fix logical

4 lines of code changed in 1 file:

sbu062 2017-09-10 15:31 Rev.: 5193

doc: details of latest changes in doc

13 lines of code changed in 1 file:

sbu062 2017-09-10 15:31 Rev.: 5192

(log_check_external) now returns the validity status of externals, check and report it to logger, if all invalid plotting is disabled for speed

48 lines of code changed in 1 file:

sbu062 2017-09-10 15:30 Rev.: 5191

global parameter IS_PLOTTING is controlled by environment variable DEBUG_PLOTS

30 lines of code changed in 1 file:

sbu062 2017-09-10 15:30 Rev.: 5190

added global parameter IS_PLOTTING controlling debug plots

28 lines of code changed in 1 file:

sbu062 2017-09-10 13:55 Rev.: 5189

(call_external): try to report error status and error message, additional notes, so far use (execute_command_line) intrinsic

39 lines of code changed in 1 file:

sbu062 2017-09-10 12:50 Rev.: 5188

(call_external): system call backend is used, seems avoid craches on 'ahaworkshop' cloud-based system

14 lines of code changed in 1 file:

sbu062 2017-09-10 12:37 Rev.: 5187

(call_external): system call seems to work on ahaworkshop, try asynchronous (no wait)

4 lines of code changed in 1 file:

sbu062 2017-09-10 12:32 Rev.: 5186

(call_external): try system call

4 lines of code changed in 1 file:

sbu062 2017-09-10 12:32 Rev.: 5185

(call_external): format removed, doesn't help on ahaworkshop system still craching

2 lines of code changed in 1 file:

sbu062 2017-09-10 11:44 Rev.: 5184

(call_external): still crashing on some systems, add shorter format, if solves should be optional dummy parameter

2 lines of code changed in 1 file:

sbu062 2017-09-10 11:23 Rev.: 5183

(call_external): report synchronious mode

2 lines of code changed in 1 file:

sbu062 2017-09-10 10:25 Rev.: 5182

(call_external): intel fortran does not tolerate inline concatenate in execute_command_line, perhaps due to compiler bug, runtile error:
forrtl: severe (124): Invalid command supplied to EXECUTE_COMMAND_LINE
seems crasing was only with command line with exponential notation.
Separate variable that builds the whole command solves crashing.

7 lines of code changed in 1 file:

sbu062 2017-09-10 09:33 Rev.: 5181

(call_external): debug preview command line in logger as ifort crashes

3 lines of code changed in 1 file:

sbu062 2017-09-10 08:48 Rev.: 5180

increased baseline probability FOOD_ITEM_CAPTURE_PROBABILITY

1 lines of code changed in 1 file:

sbu062 2017-09-10 08:42 Rev.: 5179

probability of capture and predation risk forced within [0,1], additional safeguard

19 lines of code changed in 1 file:

sbu062 2017-09-10 08:42 Rev.: 5178

doc: interpolation preview plot command added for food capture prob

5 lines of code changed in 1 file:

sbu062 2017-09-10 07:44 Rev.: 5177

(behaviour_select_optimal): include agent name in gos excectancy array output for easy grepping

2 lines of code changed in 1 file:

sbu062 2017-09-10 07:31 Rev.: 5176

doc on Global_Rescale_Maximum_Motivation

3 lines of code changed in 1 file:

sbu062 2017-09-10 07:18 Rev.: 5175

output behaviour label in debug only

1 lines of code changed in 1 file:

sbu062 2017-09-10 07:08 Rev.: 5174

Global_Rescale_Maximum_Motivation moved up

8 lines of code changed in 1 file:

sbu062 2017-09-10 06:53 Rev.: 5173

added Global_Rescale_Maximum_Motivation parameter, use in debug code as rescale_max_motivation

28 lines of code changed in 1 file:

sbu062 2017-09-09 13:07 Rev.: 5172

disabled forgotten generic pattern

2 lines of code changed in 1 file:

sbu062 2017-09-09 13:07 Rev.: 5171

bug: additional notes on intel ifort ipo internal compiler error

8 lines of code changed in 1 file:

sbu062 2017-09-09 09:49 Rev.: 5170

bug: deleted intel ifort crash report, it is found in history prev. rev.

0 lines of code changed in 1 file:

sbu062 2017-09-09 09:47 Rev.: 5169

bug: added intel compiler error / crash report description in this text file, first appear at svn rev. 5010 (hg: f26e7bdb52da4c0cfd794a65d5284eaaad279ab3)

0 lines of code changed in 1 file:

sbu062 2017-09-08 23:21 Rev.: 5168

ifort: place arrays to heap, generate interfaces in debug mode; this seems to solve segmentation fault crash on some systems, also try 'ulimit 999999999'

8 lines of code changed in 1 file:

sbu062 2017-09-08 19:58 Rev.: 5167

enable function inlining for gfortran and ifort

3 lines of code changed in 1 file:

sbu062 2017-09-08 19:30 Rev.: 5166

debug: file name suffix _end to avoid overwrite

1 lines of code changed in 1 file:

sbu062 2017-09-08 19:30 Rev.: 5165

static from variable in ifort options

1 lines of code changed in 1 file:

sbu062 2017-09-08 19:30 Rev.: 5164

static build on gnu fortran

1 lines of code changed in 1 file:

sbu062 2017-09-08 19:30 Rev.: 5163

bug: intel fortran compiler 17.0.4 bug: interprocedural optimization between files enabled (-ipo) results in compiler bug:

ifort -sox -parallel -O3 -ipo -o MODEL.exe HEDG2_DRV.f90 HEDG2_04.o BASE_UTILS.o BASE_STRINGS.o BASE_CSV_IO.o BASE_LOGGER.o BASE_RANDOM.o
** The compiler has encountered an unexpected problem.
** Segmentation violation signal raised. **
Access violation or stack overflow. Please contact Intel Support for assistance.

ifort: error #10106: Fatal error in /opt/intel/compilers_and_libraries_2017.4.196/linux/bin/intel64/fortcom, terminated by segmentation violation
ifort: error #10014: problem during multi-file optimization compilation (code 1)
make: *** [MODEL.exe] Error 1

4 lines of code changed in 1 file:

sbu062 2017-09-08 19:30 Rev.: 5162

debug: save inds at end of run

11 lines of code changed in 1 file:

sbu062 2017-09-08 11:45 Rev.: 5161

added link to example code in overview

6 lines of code changed in 1 file:

sbu062 2017-09-08 11:31 Rev.: 5160

debug code for (save_csv) deleted

1 lines of code changed in 1 file:

sbu062 2017-09-08 11:31 Rev.: 5159

(population_save_data_all_agents_csv): reimplemented whole procedure using low-level CSV_IO procs

145 lines of code changed in 1 file:

sbu062 2017-09-08 11:30 Rev.: 5158

(population_save_data_all_agents_csv): save names of agents in separate file; debug code separaters for better visibility of parts

18 lines of code changed in 1 file:

sbu062 2017-09-08 11:29 Rev.: 5157

typo

1 lines of code changed in 1 file:

sbu062 2017-09-08 11:25 Rev.: 5156

added extended example code for CSV_IO from model

171 lines of code changed in 1 file:

sbu062 2017-09-07 14:57 Rev.: 5155

(approach_do_execute): fixed noninitialised agent_length. ERROR:
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:
#0 0x2B0281EF1777
#1 0x2B0281EF1D7E
#2 0x2B0282980CAF
#3 0x49C0C9 in __the_neurobio_MOD_approach_do_execute at HEDG2_04.f90:31423
#4 0x4812EB in __the_neurobio_MOD_behaviour_do_approach at HEDG2_04.f90:40158 (discriminator 1)
#5 0x47F873 in __the_neurobio_MOD_behaviour_select_optimal at HEDG2_04.f90:40558
#6 0x4D8AFB in life_cycles_debug_test at HEDG2_04.f90:42658
#7 0x4D00BA in __the_evolution_MOD_generations_loop_ga at HEDG2_04.f90:43376 (discriminator 1)
#8 0x402219 in aha_model_driver at HEDG2_DRV.f90:36
make[1]: *** [run_local] Floating point exception
make[1]: Leaving directory `/home/budaev/Desktop/WORK/AHA-DEV/HEDG2_01'
make: *** [run] Error 2

1 lines of code changed in 1 file:

sbu062 2017-09-07 13:18 Rev.: 5154

debug: disable join food resources, agent position in global array

13 lines of code changed in 1 file:

sbu062 2017-09-07 13:18 Rev.: 5153

doc: tiny fix

1 lines of code changed in 1 file:

sbu062 2017-09-07 11:48 Rev.: 5152

(eat_food_item_do_execute): moved logger outputs inside bound checking construction; error report placed

48 lines of code changed in 1 file:

sbu062 2017-09-07 11:48 Rev.: 5151

tests: stochasstic test for surface_light()

43 lines of code changed in 1 file:

sbu062 2017-09-07 09:53 Rev.: 5150

(light_surface): is_stochastic for consistency with other procs

26 lines of code changed in 1 file:

sbu062 2017-09-07 08:05 Rev.: 5149

doc: small

1 lines of code changed in 1 file:

sbu062 2017-09-07 08:05 Rev.: 5148

(light_depth): surface light parameteroptional, is_stochastic flag is added

82 lines of code changed in 1 file:

sbu062 2017-09-07 08:05 Rev.: 5147

(light_surface): tstep parameter is now optional in scalar procedures

45 lines of code changed in 1 file:

sbu062 2017-09-06 19:50 Rev.: 5146

debug: small fix

4 lines of code changed in 1 file:

sbu062 2017-09-06 19:50 Rev.: 5145

debug: debug code, global time step, save food resources

15 lines of code changed in 1 file:

sbu062 2017-09-06 15:15 Rev.: 5144

(join): added optional label for the collapsed object

32 lines of code changed in 1 file:

sbu062 2017-09-06 14:33 Rev.: 5143

in csv save procedures, added optional is_success indicator

18 lines of code changed in 1 file:

sbu062 2017-09-06 12:55 Rev.: 5142

parametrised array constructor allows variable size substrings

1 lines of code changed in 1 file:

sbu062 2017-09-06 12:53 Rev.: 5141

use (trim) on (get_label) as it is fixed length

5 lines of code changed in 1 file:

sbu062 2017-09-06 12:53 Rev.: 5140

(food_resource_get_label): have to use fixed label as intel ifort does not support allocatable attribute in pure function value: error:
#6112: A function with the ELEMENTAL prefix-spec shall not have the ALLOCATABLE attribute. [FOOD_RESOURCE_GET_LABEL]

1 lines of code changed in 1 file:

sbu062 2017-09-06 12:53 Rev.: 5139

use parametrised array constructor, with type specifier: supported in gfortran and ifort

2 lines of code changed in 1 file:

sbu062 2017-09-06 12:53 Rev.: 5138

(food_resource_save_foods_csv): saves food resource data

44 lines of code changed in 1 file:

sbu062 2017-09-06 11:41 Rev.: 5137

tests: added tests for (abundance) method

25 lines of code changed in 1 file:

sbu062 2017-09-06 11:41 Rev.: 5136

log both size-based and parameter based abundance to check in joined food resource(s)

4 lines of code changed in 1 file:

sbu062 2017-09-06 11:41 Rev.: 5135

(get_label) method for food resource; logging each food item eaten in debug mode

22 lines of code changed in 1 file:

sbu062 2017-09-06 11:41 Rev.: 5134

(abundance): getter method on food resource; check array range in (eat_food_item_do_execute) and report out of range condition to logger, this was once in debug run

25 lines of code changed in 1 file:

sbu062 2017-09-06 09:50 Rev.: 5133

(behaviour_select_optimal), behaviour tag better discernible in log without procname and modname prefix

2 lines of code changed in 1 file:

sbu062 2017-09-06 09:50 Rev.: 5132

small reformat

2 lines of code changed in 1 file:

sbu062 2017-09-06 09:50 Rev.: 5131

debug: steps increased to full lifespan in the debug code

3 lines of code changed in 1 file:

sbu062 2017-09-06 08:43 Rev.: 5130

(init_environment_objects): fix and reformat, log habitat labels by implied loop in tostr()

11 lines of code changed in 1 file:

sbu062 2017-09-06 08:43 Rev.: 5129

(init_environment_objects): call (assemble) instead of manual allocation of global habitats array

25 lines of code changed in 1 file:

sbu062 2017-09-05 14:04 Rev.: 5128

debug: small change

5 lines of code changed in 1 file:

sbu062 2017-09-05 13:30 Rev.: 5127

doc: perception to memory forgotten

3 lines of code changed in 1 file:

sbu062 2017-09-05 13:30 Rev.: 5126

debug: conspecific sex from perception object and objective population via cid, added (perception_to_memory) to debug code

6 lines of code changed in 1 file:

sbu062 2017-09-05 12:44 Rev.: 5125

debug: added debug logging

27 lines of code changed in 1 file:

sbu062 2017-09-05 12:44 Rev.: 5124

debug: added debug logging, checking migration and feeeding, migration seem too frequent

74 lines of code changed in 1 file:

sbu062 2017-09-04 23:13 Rev.: 5123

(migrate_do_execute): additional logger outputs; (habitat_name_get) accessor for habitat label; debug code

46 lines of code changed in 1 file:

sbu062 2017-09-04 19:24 Rev.: 5122

(behaviour_select_optimal): started adding debug logs

14 lines of code changed in 1 file:

sbu062 2017-09-04 15:46 Rev.: 5121

(behaviour_select_optimal): log arousal array

4 lines of code changed in 1 file:

sbu062 2017-09-04 15:46 Rev.: 5120

debug code for (do_behave)

99 lines of code changed in 1 file:

sbu062 2017-09-04 15:46 Rev.: 5119

(behaviour_select_optimal): added optional parameter for the label of behaviour unit executed; debug code execute (do_behave)

33 lines of code changed in 1 file:

sbu062 2017-09-04 15:46

doc: small fix

2 lines of code changed in 2 files:

sbu062 2017-09-04 14:03 Rev.: 5116

doc: small fix

6 lines of code changed in 1 file:

sbu062 2017-09-04 13:41 Rev.: 5115

(do_behave) is the public interface for (behaviour_select_optimal)

1 lines of code changed in 1 file:

sbu062 2017-09-04 12:36 Rev.: 5114

debug code: ends with (system_halt)

1 lines of code changed in 1 file:

sbu062 2017-09-04 12:36 Rev.: 5113

(system_halt): use centralised storage for error messages, proc now ready

29 lines of code changed in 1 file:

sbu062 2017-09-04 12:36 Rev.: 5112

(behaviour_select_optimal): call (system_halt) on allocation failure

1 lines of code changed in 1 file:

sbu062 2017-09-04 12:36 Rev.: 5111

(system_halt): shutdown logger, comments, final message on stderr

34 lines of code changed in 1 file:

sbu062 2017-09-04 12:36 Rev.: 5110

(behaviour_select_optimal) automatic allocation, check for allocated; (system_halt) with exit code

64 lines of code changed in 1 file:

cje012 2017-09-04 12:32 Rev.: 5109

Added an option to remove size independent mortality from individual mortality plots. Commented out loop for plotting all varaiables against time, now it only plots for length~timestep. Just remove these comments if you want this functionality back.

17 lines of code changed in 1 file:

sbu062 2017-09-02 11:39 Rev.: 5108

(approach_conspecifics_do_this): MIGRATE_DIST_MAX_STEP exceeded logger tag converted to warning from error, increased limit

11 lines of code changed in 1 file:

sbu062 2017-09-02 06:30 Rev.: 5107

doc: fix float literals fraction parts to visible style: ._SRP to .0_SRP

19 lines of code changed in 1 file:

sbu062 2017-09-02 06:20 Rev.: 5106

doc: cleanup doxy

4 lines of code changed in 1 file:

sbu062 2017-09-01 21:27 Rev.: 5105

doc: cleanup

1 lines of code changed in 1 file:

sbu062 2017-09-01 21:15 Rev.: 5104

doc: cleanup

68 lines of code changed in 1 file:

sbu062 2017-09-01 14:10 Rev.: 5103

doc: small cleanups doxy

1 lines of code changed in 1 file:

sbu062 2017-09-01 14:07 Rev.: 5102

doc: fix lowercase

1 lines of code changed in 1 file:

sbu062 2017-09-01 14:01 Rev.: 5101

doc: small cleanups doxy

11 lines of code changed in 1 file:

sbu062 2017-09-01 13:46 Rev.: 5100

(behaviour_select_optimal): calculate max_perception, debug fixed value deleted

4 lines of code changed in 1 file:

sbu062 2017-09-01 13:46 Rev.: 5099

(approach_consp_select): counter obsolete

0 lines of code changed in 1 file:

sbu062 2017-09-01 13:24 Rev.: 5098

(approach_consp_select): reuse existing (consp_select) method instead of looping; also fixes wrong target object

32 lines of code changed in 1 file:

sbu062 2017-09-01 07:53 Rev.: 5097

doc: added links to (expectancies_calculate)

21 lines of code changed in 1 file:

August 2017 »

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