May 2019 Commit Log

Number of Commits:
137
Number of Active Developers:
6
sbu062 2019-05-31 20:39 Rev.: 8375

different build option for Intel MKL on Windows ifort
- tested on Windows and works on UiB ifort
- `-mkl` on Linux, `/Qmkl` on Windows

2 lines of code changed in 1 file:

sbu062 2019-05-31 17:47 Rev.: 8374

better name

2 lines of code changed in 1 file:

sbu062 2019-05-31 17:44 Rev.: 8373

test program calculating linear regression with LAPACK

5 lines of code changed in 2 files:

sbu062 2019-05-31 11:01 Rev.: 8372

converted from Compaq fortran to Intel fortran

651 lines of code changed in 3 files:

sbu062 2019-05-31 09:13 Rev.: 8371

reorganised project

1339 lines of code changed in 17 files:

sbu062 2019-05-31 09:01 Rev.: 8368

small note on oracle f95

4 lines of code changed in 1 file:

sbu062 2019-05-31 08:58 Rev.: 8367

function (rank) is extension and can be unavailable on some platforms, e.g. Oracle

2 lines of code changed in 1 file:

hje044 2019-05-31 06:42

0 lines of code changed in 22 files:

sbu062 2019-05-30 13:14 Rev.: 8364

doc: added doc for (ZEROFUN)

0 lines of code changed in 2 files:

sbu062 2019-05-30 09:31 Rev.: 8363

(ZEROFUN) better name for (FUNCZERO)

9 lines of code changed in 2 files:

sbu062 2019-05-29 20:35 Rev.: 8362

tests: added tests for DB kind, (FUNCZERO)

63 lines of code changed in 2 files:

sbu062 2019-05-29 18:57 Rev.: 8361

minor hanges: X is obsolete, added note on Oracle f95

5 lines of code changed in 1 file:

sbu062 2019-05-29 18:56 Rev.: 8360

tests build with DEBUG

0 lines of code changed in 2 files:

sbu062 2019-05-29 18:56 Rev.: 8359

fix wrong kind conversion, add all main kinds

3 lines of code changed in 2 files:

sbu062 2019-05-29 17:21 Rev.: 8358

tests: tests for (FUNCZERO)
- Oracle f95 required explicit interface to use function as argument

0 lines of code changed in 2 files:

sbu062 2019-05-29 17:20 Rev.: 8357

public interface

8 lines of code changed in 1 file:

sbu062 2019-05-29 15:59 Rev.: 8356

R8 version for (zeroin)

140 lines of code changed in 1 file:

sbu062 2019-05-29 15:38 Rev.: 8355

fixed kind for DP R8, added (zeroin) r4 from the AHA model

0 lines of code changed in 6 files:

hje044 2019-05-29 12:07 Rev.: 8354

0 lines of code changed in 7 files:

sbu062 2019-05-29 10:41 Rev.: 8353

backported fixes and tests r8333:r8348 from model **06**

265 lines of code changed in 10 files:

sbu062 2019-05-29 10:39 Rev.: 8352

more test code to play with for IEEE

84 lines of code changed in 1 file:

sbu062 2019-05-29 09:10 Rev.: 8351

tests: backported r8347 tests for (do_sanitise)

160 lines of code changed in 8 files:

tla051 2019-05-29 05:59 Rev.: 8350

full model BUT WITH BUGS

58 lines of code changed in 1 file:

sbu062 2019-05-28 15:37 Rev.: 8349

backported fix r8348

8 lines of code changed in 8 files:

sbu062 2019-05-28 15:32 Rev.: 8348

(do_sanitise): fix wrong condition

1 lines of code changed in 1 file:

sbu062 2019-05-28 15:31 Rev.: 8347

tests: elementary tests for (do_sanitise)
- does not include IEEE exceptions

20 lines of code changed in 1 file:

sbu062 2019-05-28 14:15 Rev.: 8346

backported r8339:r8344 from parent model
- r8344 optional argument for checking only invalid values
- r8343 checks for Inf

240 lines of code changed in 8 files:

sbu062 2019-05-28 13:35 Rev.: 8345

check for Inf invalid values

13 lines of code changed in 1 file:

sbu062 2019-05-28 13:25 Rev.: 8344

(do_sanitise): added optional parameter to fix only IEEE invalid values
- Inf+, Inf-, NaN

16 lines of code changed in 1 file:

sbu062 2019-05-28 13:13 Rev.: 8343

also check for and correct infinity (Inf+, Inf-)

14 lines of code changed in 1 file:

sbu062 2019-05-28 12:34 Rev.: 8342

backported r8339 IEEE_IS_NAN() is siandard

24 lines of code changed in 8 files:

sbu062 2019-05-28 09:12 Rev.: 8341

fix temporary file name

2 lines of code changed in 1 file:

tla051 2019-05-28 05:55 Rev.: 8340

started the seaice loop

42 lines of code changed in 1 file:

sbu062 2019-05-27 16:43 Rev.: 8339

better use standard IEEE function
- IEEE_IS_NAN() is siandard
- isnan() us GNU extension non-standard

3 lines of code changed in 1 file:

sbu062 2019-05-27 16:40 Rev.: 8338

better output of IEEE flags, e.g. NaN checks

3 lines of code changed in 1 file:

sbu062 2019-05-27 16:28 Rev.: 8337

(ieee_support_datatype) is not supported on all compilers
- no support on Oracle/Sun f95

0 lines of code changed in 1 file:

sbu062 2019-05-27 14:08 Rev.: 8336

small test program to illustrate ieee math trapping

61 lines of code changed in 1 file:

cje012 2019-05-27 07:47 Rev.: 8335

Minor change

24 lines of code changed in 1 file:

tla051 2019-05-24 12:56 Rev.: 8334

added biology (calanus and herring), calculated light transmission

66 lines of code changed in 1 file:

sbu062 2019-05-24 11:51 Rev.: 8333

fix doxygen comments after backporting
- forgotten on parameters descriptions

56 lines of code changed in 14 files:

sbu062 2019-05-24 11:22 Rev.: 8332

more conformant explanations for (do_sanitise) and (ieee_error_reporting)
- more correct doxygen style

630 lines of code changed in 14 files:

sbu062 2019-05-24 07:05 Rev.: 8331

obsolete branch
- ryan didn't do anything here for two years now

0 lines of code changed in 99 files:

sbu062 2019-05-24 06:56 Rev.: 8330

backported parameter change for (fitness_energy_reprfact_mass) from r8233

10 lines of code changed in 5 files:

sbu062 2019-05-24 06:34 Rev.: 8329

backported (fitness_energy_reprfact_mass) r8234
- tests pass

495 lines of code changed in 7 files:

sbu062 2019-05-23 23:15 Rev.: 8328

backported latest changes IEEE exceptions from HEDG2_06 r8320

1464 lines of code changed in 16 files:

sbu062 2019-05-23 22:21 Rev.: 8327

backported latest changes from HEDG2_06 r8320
- tests pass

200 lines of code changed in 4 files:

sbu062 2019-05-23 21:51 Rev.: 8326

fix popsize from debug

1 lines of code changed in 1 file:

sbu062 2019-05-23 21:50 Rev.: 8325

backported latest changes from HEDG2_06 r8320
- tests pass

200 lines of code changed in 4 files:

sbu062 2019-05-23 21:26 Rev.: 8324

backported latest changes from HEDG2_06 r8320
- tests pass

196 lines of code changed in 4 files:

sbu062 2019-05-23 21:19 Rev.: 8323

revert r8311 in (std_dev), does not require HRP
- tests pass

3 lines of code changed in 1 file:

sbu062 2019-05-23 20:47 Rev.: 8322

backported latest changes from HEDG2_06 r8320
- tests pass

196 lines of code changed in 4 files:

sbu062 2019-05-23 19:51 Rev.: 8321

backported latest changes from HEDG2_06 r8320
- tests pass

197 lines of code changed in 4 files:

sbu062 2019-05-23 18:34 Rev.: 8320

IEEE_INEXACT fully disabled, it is raised very often false positive

14 lines of code changed in 1 file:

sbu062 2019-05-23 15:35 Rev.: 8319

forst check IEEE exception then fix data array

5 lines of code changed in 1 file:

sbu062 2019-05-23 15:31 Rev.: 8318

reuse (ieee_error_reporting) in (do_sanitise)

5 lines of code changed in 1 file:

sbu062 2019-05-23 15:25 Rev.: 8317

added optional IEEE exception reset parameter to (ieee_error_reporting)
- this is used in (system_init), all bogus exceptions are reset

27 lines of code changed in 1 file:

sbu062 2019-05-23 14:53 Rev.: 8316

check IEEE exceptios support at start in (system_init)
- also forgot PROCNAME in (ieee_error_reporting)

18 lines of code changed in 1 file:

sbu062 2019-05-23 14:24 Rev.: 8315

(ieee_error_reporting) function to return IEEE error condition and log

114 lines of code changed in 2 files:

sbu062 2019-05-23 11:18 Rev.: 8314

(sanitise) function is superfluous

0 lines of code changed in 1 file:

sbu062 2019-05-23 11:15 Rev.: 8313

check and report all IEEE flags

35 lines of code changed in 1 file:

sbu062 2019-05-22 15:46 Rev.: 8312

report ieee math condition and reset if true

31 lines of code changed in 1 file:

sbu062 2019-05-22 15:10 Rev.: 8311

minior: added max sanitise value in comments

7 lines of code changed in 1 file:

sbu062 2019-05-22 08:54 Rev.: 8310

web: fix formatting abstract

28 lines of code changed in 1 file:

sbu062 2019-05-22 08:52 Rev.: 8309

web: fixed refs to fee paper

14 lines of code changed in 2 files:

sbu062 2019-05-22 08:48 Rev.: 8308

web: updated fee paper to published version

4 lines of code changed in 1 file:

cje012 2019-05-22 08:16 Rev.: 8307

Added code to get transparent backgrounds on ggplots, which can be useful for making plots to presentations.

8 lines of code changed in 1 file:

cje012 2019-05-22 08:15 Rev.: 8306

Some small but important changes to figures.

28 lines of code changed in 1 file:

lhi088 2019-05-21 07:59 Rev.: 8305

made a loop for different strengths of sexual selection

created an array to save population information like density, etc.

added noise components to
environment
density dependent offspring survival curve

162 lines of code changed in 2 files:

sbu062 2019-05-16 23:24 Rev.: 8304

tests: added test suite for big values
- (average) and (std_dev)
- note that (std_dev) does not require `HRP`

574 lines of code changed in 14 files:

sbu062 2019-05-16 15:15 Rev.: 8303

**compiler bug**, debug: fix for intel **ifort 19** compiler bug
- accessor function `is_available()` is not accessible
resulting in crashing in high cpu-optimised build
(`-O3` etc)

70 lines of code changed in 14 files:

sbu062 2019-05-16 14:47 Rev.: 8302

debug: more information logging
- log value `distance` and `visrange` in `LOG_DBG` because
they occur quite often, need checking actual values if
they are really not very much different, small
differences can be ignored in log WARNINGs

28 lines of code changed in 14 files:

tla051 2019-05-16 13:37 Rev.: 8301

added plot E

81 lines of code changed in 1 file:

tla051 2019-05-16 13:36

fixed mistake in altdeg_noon

30 lines of code changed in 2 files:

cje012 2019-05-16 11:45 Rev.: 8298

Increased the resulution between the parasite virulence steps.

1 lines of code changed in 1 file:

cje012 2019-05-16 11:20 Rev.: 8297

Commented out starvation_limit

2 lines of code changed in 1 file:

sbu062 2019-05-15 15:00 Rev.: 8296

fix merged r8280 for (average), test pass all

85 lines of code changed in 5 files:

sbu062 2019-05-15 14:40 Rev.: 8295

tests: merge overflow and tolerance fixes r8291 and r8292
- tests FAIL without (average) function fix in r8280

65 lines of code changed in 14 files:

sbu062 2019-05-15 14:28 Rev.: 8294

tests: update tests to check overflow in average and tolerance rise for random test
- merged r8291 and r8292

104 lines of code changed in 16 files:

sbu062 2019-05-15 13:58 Rev.: 8293

add comment on logging

2 lines of code changed in 1 file:

sbu062 2019-05-15 13:25 Rev.: 8292

tests: raise tolerance, with many repeated tests there are chances of false positives

2 lines of code changed in 1 file:

sbu062 2019-05-15 12:41 Rev.: 8291

tests: add test for possible overflow in big arrays, checks for r8280

0 lines of code changed in 2 files:

sbu062 2019-05-14 15:57 Rev.: 8290

popsize increased to 5000

7 lines of code changed in 7 files:

sbu062 2019-05-14 15:50 Rev.: 8289

popsize increased to 5000

1 lines of code changed in 1 file:

sbu062 2019-05-14 14:21 Rev.: 8288

info on sub-branches

14 lines of code changed in 1 file:

tla051 2019-05-14 14:12 Rev.: 8287

added plot C and D

111 lines of code changed in 1 file:

tla051 2019-05-14 14:11 Rev.: 8286

added missing preconversion of latitudes

32 lines of code changed in 1 file:

sbu062 2019-05-14 13:12 Rev.: 8285

scripts to automate basic builds

44 lines of code changed in 2 files:

sbu062 2019-05-14 12:20 Rev.: 8284

merged fix r8280 from base code **HEDG02_06** to branches
- `make tests` passed

136 lines of code changed in 8 files:

sbu062 2019-05-14 11:47 Rev.: 8283

run: all HEDG2_06 model run types placed in sepaerate branches under `HEDG2_06.b`
- `HEDTOOLS` also copied to allow stand-alone unchanged building

3017056 lines of code changed in 1248 files:

tla051 2019-05-14 11:29 Rev.: 8282

code to test the light output from fortran

50 lines of code changed in 1 file:

cje012 2019-05-13 15:38 Rev.: 8281

Changed script so it is easier to change the text size and colours of all figures at once.

26 lines of code changed in 1 file:

sbu062 2019-05-13 14:55 Rev.: 8280

fix overflow in (average) with huge arrays
- switch to high precision model for sum variable that can grow insane

17 lines of code changed in 1 file:

sbu062 2019-05-13 14:32 Rev.: 8279

base model is r8235 model P1H
- `svn merge -r HEAD:8235 .`

6 lines of code changed in 2 files:

cje012 2019-05-13 11:13 Rev.: 8278

Added list with names for the ind_pv_summary_individual array from the Hormone_v2_PV.f90.

20 lines of code changed in 1 file:

cje012 2019-05-13 11:10 Rev.: 8277

Added new function for importing data from ind_pv_summary_individual.bin files.

63 lines of code changed in 1 file:

cje012 2019-05-13 11:05 Rev.: 8276

Changed figure F and script to take bin files from Hormone_v2_PV.f90.

44 lines of code changed in 1 file:

cje012 2019-05-13 11:04 Rev.: 8275

Fixed error in saving to the ind_pv_summary_individual array, as well as uncommented lines concerning starvation_limit

4 lines of code changed in 1 file:

tla051 2019-05-13 10:52 Rev.: 8274

moved to trunk

120 lines of code changed in 6 files:

tla051 2019-05-13 10:51 Rev.: 8272

start

0 lines of code changed in 1 file:

tla051 2019-05-13 10:51

0 lines of code changed in 2 files:

tla051 2019-05-13 10:50

start

0 lines of code changed in 5 files:

cje012 2019-05-10 14:28 Rev.: 8263

Minor change

1 lines of code changed in 1 file:

cje012 2019-05-10 14:23 Rev.: 8262

Model that runs forward only with differeing levels of parasite virulence, from 0-1, with 0.05 steps

530 lines of code changed in 1 file:

cje012 2019-05-10 14:21 Rev.: 8261

Updated to also include runpv to run model forward only with differeing parasite virulence

38 lines of code changed in 1 file:

sbu062 2019-05-09 07:27 Rev.: 8258

HEDTOOLS 1.2
- real kind portable
- tests (CSV and STRINGS)

39540 lines of code changed in 89 files:

sbu062 2019-05-09 07:21 Rev.: 8257

renamed main module for easier includ in third-party components

5075 lines of code changed in 3 files:

sbu062 2019-05-08 17:13 Rev.: 8256

deleted tests for strings module from tests suite

0 lines of code changed in 1 file:

sbu062 2019-05-08 17:05 Rev.: 8255

copied tests from HEDTOOLS

273 lines of code changed in 1 file:

sbu062 2019-05-08 17:02 Rev.: 8254

small note

2 lines of code changed in 1 file:

sbu062 2019-05-08 17:01 Rev.: 8253

another note

3 lines of code changed in 1 file:

sbu062 2019-05-08 16:58 Rev.: 8252

updated comments on private use

3 lines of code changed in 1 file:

sbu062 2019-05-08 16:55 Rev.: 8251

added radme for stand-alone version

8 lines of code changed in 1 file:

sbu062 2019-05-08 16:52 Rev.: 8250

added procedures from strings module of HEDTOOLS, they are private

382 lines of code changed in 1 file:

sbu062 2019-05-08 16:26 Rev.: 8249

made a stand-alone version of CSV_IO (there is still dependencies on STRINGS)

4687 lines of code changed in 1 file:

sbu062 2019-05-08 12:27 Rev.: 8248

added the order of files for command line compilation on Linux

10 lines of code changed in 1 file:

glj042 2019-05-08 11:20

5 lines of code changed in 4 files:

glj042 2019-05-08 10:35 Rev.: 8245

added actual files

2 lines of code changed in 14 files:

sbu062 2019-05-07 15:34 Rev.: 8242

**run P0V:** Full predictive, no attention restriction, very high predation
- base rev `svn merge -r HEAD:8227 .`

3 lines of code changed in 2 files:

sbu062 2019-05-07 15:31 Rev.: 8241

**run G0V:** GOS-linked, no attention restriction, very high predation
- base rev `svn merge -r HEAD:8226 .`

4 lines of code changed in 3 files:

sbu062 2019-05-07 15:28 Rev.: 8240

**run P1V:** Full predictive, full attention, very high predation
- base rev `svn merge -r HEAD:8225 .`

3 lines of code changed in 2 files:

sbu062 2019-05-07 15:22 Rev.: 8239

**run G1V:** GOS-linked, full attention, very high predation
- `svn merge -r HEAD:8224 .`

7 lines of code changed in 3 files:

sbu062 2019-05-07 15:17 Rev.: 8238

**run P0H:** Full predictive, no attention restriction, high predation
- base rev: `svn merge -r HEAD:8210 .`

3 lines of code changed in 2 files:

sbu062 2019-05-07 15:14 Rev.: 8237

**run G0H:** GOS-linked, no attention restriction, high predation
- base rev: `svn merge -r HEAD:8209 .`

3 lines of code changed in 2 files:

sbu062 2019-05-07 15:11 Rev.: 8236

**run G1H:** GOS-linked, full attention, high predation
- base rev: `svn merge -r HEAD:8208 .`

3 lines of code changed in 2 files:

sbu062 2019-05-07 14:47 Rev.: 8235

**run P1H:** Full predictive, full attention, high predation

1 lines of code changed in 1 file:

sbu062 2019-05-07 14:37 Rev.: 8234

(fitness_energy_reprfact_mass): reformat/reorder parameters only

11 lines of code changed in 1 file:

sbu062 2019-05-07 13:55 Rev.: 8233

(fitness_energy_reprfact_mass): additional fitness function weighted sum of (1) mass increment relative to birth mass, (2) energy, (3) reproductive factor

62 lines of code changed in 2 files:

sbu062 2019-05-06 13:24

web: small fix

4 lines of code changed in 3 files:

sbu062 2019-05-06 13:19 Rev.: 8229

web: fee paper for ahamodel web site

16 lines of code changed in 1 file:

sbu062 2019-05-06 11:17 Rev.: 8228

base model r8207
- `svn merge -r HEAD:8207 .`

8 lines of code changed in 3 files:

sbu062 2019-05-06 11:14 Rev.: 8227

run P0V: Full predictive, no attention restriction, very high predation
- `svn merge -r HEAD:8218 .`

3 lines of code changed in 2 files:

sbu062 2019-05-06 11:12 Rev.: 8226

run G0V: GOS-linked, no attention restriction, very high predation

4 lines of code changed in 3 files:

sbu062 2019-05-06 11:07 Rev.: 8225

run P1V: Full predictive, full attention, very high predation
- `svn merge -r HEAD:8217` .

3 lines of code changed in 2 files:

sbu062 2019-05-06 11:02 Rev.: 8224

G1V: GOS-linked, full attention, very high predation
- svn merge -r HEAD:8216 .
- predation 200 (100 in `H`, 400 in `E`)

6 lines of code changed in 3 files:

cje012 2019-05-03 12:01 Rev.: 8223

Change to scale in figure C2

3 lines of code changed in 1 file:

cje012 2019-05-02 13:36 Rev.: 8222

Fixed errors in calculation of parasite fitness and transmission rate.

30 lines of code changed in 1 file:

cje012 2019-05-02 13:35 Rev.: 8221

Minor change

2 lines of code changed in 1 file:

April 2019 »

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