December 2015 Commit Log

Number of Commits:
102
Number of Active Developers:
4
sbu062 2015-12-23 12:50 Rev.: 221

Minor change - added RESTART_IF if label for more easier location

3 lines of code changed in 1 file:

sbu062 2015-12-23 12:41 Rev.: 220

very little change, maintenance for successful compiling test

88 lines of code changed in 1 file:

sbu062 2015-12-22 21:38 Rev.: 219

Continue working with SRinitfishmodel

30 lines of code changed in 1 file:

sbu062 2015-12-22 19:30 Rev.: 218

Implemented arbitrary optional format for integer conversion functions, STR_ITOA and STR_ARRAY_ITOA, tested with gfortran and Oracle f95

22 lines of code changed in 1 file:

sbu062 2015-12-22 15:30 Rev.: 217

Starting to fix SRgenecreate, initial include to MOD_FISHMODEL

3 lines of code changed in 1 file:

sbu062 2015-12-22 15:26 Rev.: 216

Fixed MOD_FISHMODEL.f90 so far, at this stage it COMPILES OK (gfortran) -- syntactically correct. Still far incomplete, some further subs commented out.

43 lines of code changed in 1 file:

sbu062 2015-12-22 12:53 Rev.: 215

continue working on initfishmodel

72 lines of code changed in 1 file:

sbu062 2015-12-22 11:38 Rev.: 214

Continue to work with SRfishmodel, do restart.txt, left old-fashioned read with format, but unit is dynamically assigned restart_unit_27 (was 27)

32 lines of code changed in 1 file:

sbu062 2015-12-21 14:25 Rev.: 213

continue working on SRinitfishmodel

30 lines of code changed in 2 files:

sbu062 2015-12-21 13:31 Rev.: 212

SRfileopen more or less converted

16 lines of code changed in 1 file:

sbu062 2015-12-21 12:30 Rev.: 211

Fixed conversion to file handle struct, + manageable file extension +log and debug messages

278 lines of code changed in 1 file:

sbu062 2015-12-21 11:10 Rev.: 210

provide sensible dafault values for the file handle derived type

2 lines of code changed in 1 file:

sbu062 2015-12-21 10:56 Rev.: 209

Converted to the file hadle structure defined now within the CSV_IO module

171 lines of code changed in 1 file:

sbu062 2015-12-21 10:45 Rev.: 208

Little comment change (readability)

4 lines of code changed in 1 file:

judyjinn 2015-12-21 08:47

Cleaned up and commented my sections of code

286 lines of code changed in 2 files:

sbu062 2015-12-20 18:22 Rev.: 205

update .svnignore - add syncthing conflicting files to the list..

9 lines of code changed in 3 files:

sbu062 2015-12-20 18:18 Rev.: 204

updated .svnignore files

16 lines of code changed in 2 files:

sbu062 2015-12-20 11:29 Rev.: 203

added svnignore for convenience

98 lines of code changed in 3 files:

judyjinn 2015-12-19 18:30 Rev.: 202

updated bugs

685 lines of code changed in 1 file:

judyjinn 2015-12-19 17:09 Rev.: 201

Cleaning up model and adding comments

1029 lines of code changed in 2 files:

sbu062 2015-12-19 11:12 Rev.: 200

Little fix for comments on CSV_IO

8 lines of code changed in 1 file:

sbu062 2015-12-19 10:41 Rev.: 199

Remove project def files for Geany editor from repo, they are always changing

0 lines of code changed in 2 files:

sbu062 2015-12-19 10:10 Rev.: 198

Added file handle derived type to CSV_IO, need derived type as SRfileopen interface is confusing and error-prone with numerous files names and units; cannot be made simpler without derived type for output files.

185 lines of code changed in 1 file:

judyjinn 2015-12-18 21:41 Rev.: 197

finished changing most modulators to MODfunctions when applicable

110 lines of code changed in 1 file:

judyjinn 2015-12-18 20:01 Rev.: 196

last commit had problem where all ABM/ABSgenes were same values. Fixed.

33 lines of code changed in 1 file:

sbu062 2015-12-18 18:30 Rev.: 195

further conversion of file objects to structures, checked conversion of stringXXX to file_XX%name_file structures

54 lines of code changed in 1 file:

judyjinn 2015-12-18 18:19 Rev.: 194

now the code actually works with these current set up files and parameters.

28 lines of code changed in 3 files:

sbu062 2015-12-18 17:47 Rev.: 193

further conversion of file objects to structures, still incomplete and rudimentary

119 lines of code changed in 1 file:

judyjinn 2015-12-18 16:41 Rev.: 192

Fixed linearfunction error. Model is back running with motor skill as a modulator

46 lines of code changed in 1 file:

judyjinn 2015-12-18 16:32 Rev.: 191

Implementing multiple modulator types to code. Currently running into error for linearfunction

510 lines of code changed in 4 files:

sbu062 2015-12-18 13:42 Rev.: 190

initial conversion of file objects to structures instead of haphazard files and strings, for CSV. incomp;lete and rudimentary

85 lines of code changed in 1 file:

sbu062 2015-12-18 10:42 Rev.: 189

Continue working on SRfileopen - strings converted

97 lines of code changed in 1 file:

sbu062 2015-12-18 10:03 Rev.: 188

Continue working on SRfileopen - converting strings to manageable

66 lines of code changed in 1 file:

sbu062 2015-12-17 13:46 Rev.: 187

continue working on SRfileopen, + start CSV out here

105 lines of code changed in 1 file:

sbu062 2015-12-17 05:38 Rev.: 186

SRinitfileopen - begin modifications

234 lines of code changed in 1 file:

sbu062 2015-12-16 18:38 Rev.: 185

shifted some LOG_MSG to SRINITRUN from SRfishmodel

88 lines of code changed in 1 file:

sbu062 2015-12-16 13:23 Rev.: 184

fixing locals in SRinitfishmodel etc. didn't change the body yet

50 lines of code changed in 2 files:

judyjinn 2015-12-16 12:52 Rev.: 183

modified SRpred_mort so pred_eff with increasing distance on ground is slightly lower

55 lines of code changed in 2 files:

sbu062 2015-12-16 12:01 Rev.: 182

further identification/ removal of global objects from SRinitfishmodel within declarations section

28 lines of code changed in 1 file:

sbu062 2015-12-16 11:45 Rev.: 181

Initial identification/ removal of global objects from SRinitfishmodel call params

37 lines of code changed in 4 files:

sbu062 2015-12-15 22:12 Rev.: 180

SRINITRUN more or less ready

580 lines of code changed in 2 files:

judyjinn 2015-12-15 21:24 Rev.: 179

fixed another bug in SRenergy_burned

3 lines of code changed in 1 file:

judyjinn 2015-12-15 21:16 Rev.: 178

found error in SRenergy_burned. Calculations for running from predator now corrected for and agents should survive better

24 lines of code changed in 1 file:

sbu062 2015-12-15 18:40 Rev.: 177

Continue transforming SRinitrun == logging parameters

34 lines of code changed in 3 files:

sbu062 2015-12-15 18:29 Rev.: 176

Fixed TOSTR, logger parameter was wrong

1 lines of code changed in 1 file:

sbu062 2015-12-15 18:26 Rev.: 175

Added arbitrary delimiter to TOSTR with string array argument

16 lines of code changed in 1 file:

judyjinn 2015-12-15 15:46 Rev.: 174

appraisal for hunger is now only stomach

1 lines of code changed in 1 file:

judyjinn 2015-12-15 15:45 Rev.: 173

fixed a mult mismatch

22 lines of code changed in 2 files:

judyjinn 2015-12-15 15:12 Rev.: 172

Found probably with appraisals only working on cell d not current cell. Fixed

15 lines of code changed in 2 files:

judyjinn 2015-12-15 14:08 Rev.: 171

Model working and producing agents that make rational decisions even with the modulations turned on

9 lines of code changed in 2 files:

sbu062 2015-12-15 14:05 Rev.: 170

Continue to convert SRinit run, now it is a logging subroutine

62 lines of code changed in 1 file:

sbu062 2015-12-15 13:15 Rev.: 169

Added safety function TOSTR with string argument

78 lines of code changed in 3 files:

judyjinn 2015-12-15 12:57 Rev.: 168

modified how predators attack and also changed branch diffifulty

96 lines of code changed in 3 files:

sbu062 2015-12-15 12:08 Rev.: 167

Continue moving variables to commondata. Fixing interface to SRinitrun

53 lines of code changed in 4 files:

judyjinn 2015-12-15 08:41 Rev.: 166

Modified the predation rates so only 1 attack occurs per generation

75 lines of code changed in 1 file:

judyjinn 2015-12-14 21:30 Rev.: 165

Run error on line 6819 occasionally occurs. Changed preceptions again. Squirrels are making the best decisions seen so far

3 lines of code changed in 1 file:

judyjinn 2015-12-14 18:24 Rev.: 164

modified comp1 for buds to get a more reasonable signal value

2 lines of code changed in 2 files:

judyjinn 2015-12-14 18:17 Rev.: 163

fixed bug from last commit. Modified the max percept value seen for move risk

9 lines of code changed in 2 files:

judyjinn 2015-12-14 17:53 Rev.: 162

increased energetic cost of moving. Modifying the comp1 for moving. Running into bound error

247 lines of code changed in 3 files:

sbu062 2015-12-14 15:41 Rev.: 161

Started adding documentation... Now only a couple of tips for Windows, e.g. how to get gfortran and tools (the simple way)...

34 lines of code changed in 1 file:

nfijg 2015-12-14 13:46 Rev.: 160

0 lines of code changed in 2 files:

sbu062 2015-12-13 11:48 Rev.: 159

added IEEE mods to makefile, little change

11 lines of code changed in 1 file:

sbu062 2015-12-13 11:41 Rev.: 158

Added rudimentary Makefile to Model

173 lines of code changed in 3 files:

judyjinn 2015-12-11 14:59 Rev.: 157

Working. commiting before adding new NRs to GOS 1 and GOS 4 and changing foraging attemps

40 lines of code changed in 3 files:

sbu062 2015-12-11 13:25 Rev.: 156

some more variables moved to commondata

14 lines of code changed in 3 files:

sbu062 2015-12-11 13:19 Rev.: 155

Default integer in random seed init, base util

3 lines of code changed in 1 file:

sbu062 2015-12-11 11:44 Rev.: 154

SRinitrun in MOD_FISHMODEL, converted five lines in sub init. Removed variables already defined in module COMMONDATA

11 lines of code changed in 2 files:

judyjinn 2015-12-11 10:16 Rev.: 153

found the movement problem. Buds were not replenishing fast enough

21 lines of code changed in 2 files:

sbu062 2015-12-11 10:09 Rev.: 152

additional/linked changes to the previous commit

275 lines of code changed in 3 files:

sbu062 2015-12-11 10:08 Rev.: 151

Converted to srinitrun and a bit further

62 lines of code changed in 1 file:

sbu062 2015-12-10 23:29 Rev.: 150

Minor changes + added original HED24D(txt)

14608 lines of code changed in 2 files:

sbu062 2015-12-10 23:13 Rev.: 149

Initial version of MOD_FUNCTIONS module, IEEE math exception calls commented out:: non-portable, wait until wrapper module WEIRD_MATH module ready

328 lines of code changed in 3 files:

judyjinn 2015-12-10 16:16 Rev.: 148

more debugging and playing around with the acorn weights. Changed the lifespan and population sizes

83 lines of code changed in 2 files:

sbu062 2015-12-10 13:32 Rev.: 147

A little reorganisation of commondata

289 lines of code changed in 2 files:

sbu062 2015-12-10 13:22 Rev.: 146

Small change in MODEL_PROTO (comments)

27 lines of code changed in 3 files:

sbu062 2015-12-10 10:59 Rev.: 145

Initial version of the Fish model -- main program and commondata (incomplete, don't build)

2065 lines of code changed in 4 files:

judyjinn 2015-12-10 09:42 Rev.: 144

updated sigmoidfunction

93 lines of code changed in 3 files:

judyjinn 2015-12-09 14:36 Rev.: 143

fixed the error that made it stop at gen 2. Squirrels are foraging better with GOS 4 now.

173 lines of code changed in 3 files:

judyjinn 2015-12-09 10:17 Rev.: 142

noticed that squirrels were leaving tree because if they spawned there, they weren't hungry, ended up being scared. Changed the states for E and S to starving if stomach is empty to prevent this from occuring.

34 lines of code changed in 2 files:

judyjinn 2015-12-09 09:01 Rev.: 141

squirrels are working their way around the ground sometimes without stopping ot starve themselves in one spot. Smart movements happen about 1/3 of time. branch=5.0, budkcals=0.25, budwt=0.1, acorns=14.6 and 3.27. Starvation at 0% body weight

1 lines of code changed in 1 file:

judyjinn 2015-12-08 18:17 Rev.: 140

Squirrels initially utilizing entire environment till reaces equilibrium point. Still not following bud/acorn gradient

189 lines of code changed in 4 files:

sbu062 2015-12-08 16:31 Rev.: 139

Modified (a little) Makefile for IEEE math modules

1237 lines of code changed in 8 files:

sbu062 2015-12-08 10:29 Rev.: 137

IEEE math modules (non-intrinsic) for gfortran - now back to trunk.
They don't compile on Windows by default and may not pass tests
on all systems. But Fimm is OK.

292 lines of code changed in 2 files:

sbu062 2015-12-08 10:21 Rev.: 136

Updated README with test results on fimm cluster. Fimm now PASSES. Laptop w/ Mint x86-32 does not fully pass tests,
and Window modules do not compile due to probably absent asm. So need update to GCC 5 on Windows

126 lines of code changed in 1 file:

sbu062 2015-12-08 09:59 Rev.: 135

Added a Makefile for building IEEE_ math modules, IEEE test not fully comply

25 lines of code changed in 2 files:

judyjinn 2015-12-08 08:21 Rev.: 134

fixed some bugs. now runs through at least 60 generatinos

76 lines of code changed in 3 files:

sbu062 2015-12-08 06:44 Rev.: 133

Added README to non-intrinsic IEEE modules for gfortran

22 lines of code changed in 1 file:

judyjinn 2015-12-07 17:57 Rev.: 132

30 cells are up and working. NR calculations are correct. Squirrels reacting to fear appropriately. Moderate success on hunger decisions. Running into divide by 0 error. To be fixed soon..

219 lines of code changed in 3 files:

sbu062 2015-12-07 15:27 Rev.: 131

Little change, added a tiny test record size program

0 lines of code changed in 1 file:

sbu062 2015-12-07 12:18 Rev.: 130

Updated trunk, reintehgrated latest HEDTOOLS from branch

5004 lines of code changed in 15 files:

judyjinn 2015-12-07 12:07 Rev.: 129

updated perceptions to include memory of buds & acornsclear

52 lines of code changed in 3 files:

judyjinn 2015-12-07 11:08 Rev.: 128

updated perceptions to include memory of buds & acorns

195 lines of code changed in 3 files:

sbu062 2015-12-07 10:49 Rev.: 127

Added non-intrinsic IEEE modules for GNU fortran, which does not fully support IEEE in older versions (perhaps prior to 6.0???)
C doesn't compile on Windows

8940 lines of code changed in 14 files:

judyjinn 2015-12-07 09:14 Rev.: 126

all appraisal/responses now calculated for all 30 cells. Implementing movement choices for the 30 cells. Not printing correct output to each cell yet.

663 lines of code changed in 4 files:

sbu062 2015-12-04 10:18 Rev.: 125

BASE_ERROR modules are mainly ready, need a little bit more testing though

57 lines of code changed in 2 files:

sbu062 2015-12-04 09:27 Rev.: 124

Filled BASE_ERRORS.f90 with all error handling modules now

284 lines of code changed in 1 file:

sbu062 2015-12-04 00:37 Rev.: 123

Error handler included assert and exception modules

788 lines of code changed in 3 files:

sbu062 2015-12-03 23:20 Rev.: 122

Initial version of error collecting module

419 lines of code changed in 5 files:

sbu062 2015-12-02 09:51 Rev.: 121

Added a small test program for CSV_IO

4 lines of code changed in 1 file:

sbu062 2015-12-02 08:57 Rev.: 120

A little tweak for Makefile

13 lines of code changed in 2 files:

jwe041 2015-12-02 07:26 Rev.: 119

0 lines of code changed in 14 files:

sbu062 2015-12-01 23:06 Rev.: 118

Added Makefile (make run). Also, a couple of portability bug fixes for CSV_IO calling from MODEL_PROTO

863 lines of code changed in 7 files:

November 2015 »

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