Developers: judyjinn

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judyjinn 2016-10-07 19:19 Rev.: 1646

commit before converting all cog/forage genes into a single genomeCOG and genomeFOR array

254 lines of code changed in 2 files:

• branches/judy/squirrel: HED24_squirrel.f90 (+252 -151), i101-squirrel-param.txt (+2 -2)

judyjinn 2016-09-24 00:46 Rev.: 1502

implemented starting weight dependent on mom's weight in SR diploideggs14 and also at the start of SRlifecycle

18 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+18 -3)

judyjinn 2016-09-24 00:25 Rev.: 1501

finished adding new gene for controlling trigger of GOS 3, genomerlxexplor

104 lines of code changed in 2 files:

• branches/judy/squirrel: CommonSquirrel.txt (+3 -2), HED24_squirrel.f90 (+101 -33)

judyjinn 2016-09-23 21:29 Rev.: 1500

added relax/explore gene to commonsquirrel

30 lines of code changed in 1 file:

• branches/judy/squirrel: CommonSquirrel.txt (+30 -22)

judyjinn 2016-09-23 21:19 Rev.: 1499

adding a gene for relax/explore in setupfile and in HED24

2 lines of code changed in 1 file:

• branches/judy/squirrel: i100-setup.txt (+2 -1)

judyjinn 2016-09-23 21:15 Rev.: 1498

no changes

15 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+15 -13)

judyjinn 2016-07-28 21:52 Rev.: 1200

added back CommonSquirrel

22 lines of code changed in 1 file:

• branches/judy/squirrel: CommonSquirrel.txt (new 22)

judyjinn 2016-07-28 21:52 Rev.: 1199

trying to fix conflict/out dated error in svn. copy pasted all the files again

0 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (-6)

judyjinn 2016-07-28 21:51 Rev.: 1198

fixed error in stay_risk equation. Changed next_loc to curr_loc. Reduced bud replenish rate. changed stay risk beta from 20 to 10. Turned memory gene back on for foodmem decay

19 lines of code changed in 3 files:

• branches/judy/squirrel: CommonSquirrel.txt (del), HED24_squirrel.f90 (+18 -11), i101-squirrel-param.txt (+1 -1)

judyjinn 2016-07-21 23:46 Rev.: 1186

Changed weight gain to be at the end of every day instead of at the end of the simulation.

195 lines of code changed in 2 files:

• branches/judy/squirrel: CommonSquirrel.txt (+2 -3), HED24_squirrel.f90 (+193 -121)

judyjinn 2016-07-15 02:34 Rev.: 1177

fixed the acorn_eff. Was too high at fisrst

4 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+4 -4)

judyjinn 2016-07-15 02:14 Rev.: 1176

trying out removal of acorn replenishing

11 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+11 -11)

judyjinn 2016-07-15 02:01 Rev.: 1175

changed replen rate for buds, forage success rate of acorns, kcals of buds. Squirrels only gain weight at the end of a day now. added a totkcals for acorns/buds in common squirrel. Change the calculation of final weight to be based on what weight squirrels had gained over 10 days

80 lines of code changed in 2 files:

• branches/judy/squirrel: CommonSquirrel.txt (+6 -2), HED24_squirrel.f90 (+74 -41)

judyjinn 2016-07-15 00:22 Rev.: 1174

Changing entire program to be 10 days long. Increased eating speed of acorns, decreased replenishing rate of buds to 0.005, changed acorn finding success rate

12 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+12 -8)

judyjinn 2016-07-06 22:46 Rev.: 1102

commit before changing from 10months to 1 week time frame

4 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+4 -4)

judyjinn 2016-07-06 19:11 Rev.: 1101

messed up my branch, readding files and deleting misc

209 lines of code changed in 1 file:

• branches/judy/squirrel: CommonSquirrel.txt (new 209)

judyjinn 2016-06-30 21:02 Rev.: 1047

fixed the unable to restart from restart.txt file problem

696 lines of code changed in 2 files:

• branches/judy/squirrel: CommonSquirrel.txt (del), HED24_squirrel.f90 (+696 -745)

judyjinn 2016-06-16 16:04 Rev.: 816

Finally got the numinds array updating correctly. Now counts only living individuals

41 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+41 -15)

judyjinn 2016-06-16 14:03 Rev.: 815

reverted back to regular numinds counting

5 lines of code changed in 1 file:

• branches/judy/squirrel: HED24_squirrel.f90 (+5 -72)

judyjinn 2016-06-16 13:58 Rev.: 814

added correct common block file and the msic folder

396 lines of code changed in 122 files:

• branches/judy/squirrel: CommonSquirrel.txt (new 396)
• branches/judy/squirrel/misc: CommonSquirrel_1D copy.txt (new), Commonfish_SNG.txt (new), HED24D_B_SNG_0210-1600.f90 (new), HED24D_B_SNG_preJarlcleanup_2015.12.30.f90 (new), HED24_squirrelAllTXTs.f90 (new), HED24_squirrel_1D copy.f90 (new), HED24_squirrel_noCSV.f90 (new), HED24_squirrel_origfoodmem.f90 (new)
• branches/judy/squirrel/misc/Dec16_preMSmod: BUILD_GCCsq.sh (new), Commonfish_SNG.txt (new), HED24D_B_SNG_0210-1600.f90 (new), errors.txt (new), i100-setup.txt (new), i101-squirrel-param.txt (new), squirrel information.txt (new)
• branches/judy/squirrel/misc/Dec16_preMSmod/outputs_Darwin: Commonfish_SNG.txt (new), HED24-1218sqgene-E01-o009-cooccurence.txt (new), HED24-1218sqgene-E01-o010-warnings.txt (new), HED24-1218sqgene-E01-o011-habitat-part01.txt (new), HED24-1218sqgene-E01-o012-popdyn.txt (new), HED24-1218sqgene-E01-o013-copepod-vert-dist.txt (new), HED24-1218sqgene-E01-o014-max-perception.txt (new), HED24-1218sqgene-E01-o015-depth&feeling.txt (new), HED24-1218sqgene-E01-o018-geneplot-avg.txt (new), HED24-1218sqgene-E01-o019-geneplot-std.txt (new), HED24-1218sqgene-E01-o020-MutHist-part01.txt (new), HED24-1218sqgene-E01-o022-iperceptSTAT.txt (new), HED24-1218sqgene-E01-o023-irawdataSTAT.txt (new), HED24-1218sqgene-E01-o024-allele_frequencies.txt (new), HED24-1218sqgene-E01-o028-DVM-200-inds.txt (new), HED24-1218sqgene-E01-o030-HEDgene-part01.txt (new), HED24-1218sqgene-E01-o032-finfo_0-1_STAT.txt (new), HED24-1218sqgene-E01-o033-finfo_0-1_FREQ.txt (new), HED24-1218sqgene-E01-o035-avgF&H@z3D.txt (new), HED24-1218sqgene-E01-o038-feeding.txt (new), HED24-1218sqgene-E01-o039-genePOS-part01.txt (new), HED24-1218sqgene-E01-o103-parameter_out.txt (new), HED24-1218sqgene-E01-o109-correlations-stomach-capacity.txt (new), HED24-1218sqgene-E01-o130-x-HF-light.txt (new), HED24-1218sqgene-E01-o131-y-HF-light.txt (new), HED24-1218sqgene-E01-o132-x-HF-other.txt (new), HED24-1218sqgene-E01-o133-y-HF-others.txt (new), HED24-1218sqgene-E01-o134-x-HH-food.txt (new), HED24-1218sqgene-E01-o135-y-HH-food.txt (new), HED24-1218sqgene-E01-o136-x-HH-other.txt (new), HED24-1218sqgene-E01-o137-y-HH-others.txt (new), HED24-1218sqgene-E01-o150-gABM-01.txt (new), HED24-1218sqgene-E01-o151-gABM-02.txt (new), HED24-1218sqgene-E01-o152-gABM-03.txt (new), HED24-1218sqgene-E01-o153-gABM-04.txt (new), HED24-1218sqgene-E01-o160-x-AF-light.txt (new), HED24-1218sqgene-E01-o161-y-AF-light.txt (new), HED24-1218sqgene-E01-o162-x-AF-others.txt (new), HED24-1218sqgene-E01-o163-y-AF-others.txt (new), HED24-1218sqgene-E01-o164-x-AF-predators.txt (new), HED24-1218sqgene-E01-o165-y-AF-predators.txt (new), HED24-1218sqgene-E01-o166-x-AH-stomach.txt (new), HED24-1218sqgene-E01-o167-y-AH-stomach.txt (new), HED24-1218sqgene-E01-o168-x-AH-food.txt (new), HED24-1218sqgene-E01-o169-y-AH-food.txt (new), MODEL_SNG-i386 (new), behaviour (new), copy_Commonfish_SNG.txt (new), copy_i100-setup.txt (new), copy_i101-squirrel-param.txt (new), fort.10 (new), fort.170 (new), fort.171 (new), fort.172 (new), fort.173 (new), fort.174 (new), fort.175 (new), fort.176 (new), fort.177 (new), fort.178 (new), fort.179 (new), fort.180 (new), fort.181 (new), fort.182 (new), fort.183 (new), fort.184 (new), fort.185 (new), fort.186 (new), fort.187 (new), fort.188 (new), fort.189 (new), fort.190 (new), fort.191 (new), fort.192 (new), fort.193 (new), fort.194 (new), fort.195 (new), fort.196 (new), fort.197 (new), fort.198 (new), fort.199 (new), fort.200 (new), fort.201 (new), fort.202 (new), fort.203 (new), fort.204 (new), fort.205 (new), fort.206 (new), fort.207 (new), fort.208 (new), fort.209 (new), i100-setup.txt (new), i101-squirrel-param.txt (new)
• branches/judy/squirrel/misc/Dec16_preMSmod/outputs_Darwin/MODEL_SNG-i386.dSYM/Contents: Info.plist (new)
• branches/judy/squirrel/misc/Dec16_preMSmod/outputs_Darwin/MODEL_SNG-i386.dSYM/Contents/Resources/DWARF: MODEL_SNG-i386 (new)
• branches/judy/squirrel/misc/pick 5 2015.11.26: Commonfish_SNG.txt (new), HED24D_B_SNG_0210-1600.f90 (new), i100-setup.txt (new), i101-squirrel-param.txt (new), squirrel information.txt (new)
• branches/judy/squirrel/misc/preJarlcleanup: CommonSquirrel.txt (new), HED24D_B_SNG_0210-1600.f90 (new), HED24D_B_SNG_preJarlcleanup_2015.12.30.f90 (new), i100-setup.txt (new), i100-setupMSmod.txt (new), i101-squirrel-param.txt (new)

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