Directory judy/squirrel/

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rdi003 2015-11-17 14:05 Rev.: 71

moved main repo contents to dir and judy branch to dir, where other new branches can be made.

0 lines of code changed in 7 files:

• judy/squirrel: BUILD_GCC.sh (del), BUILD_GCCsq.sh (del), Commonfish_SNG.txt (del), HED24D_B_SNG_0210-1600.f90 (del), build.sh (del), i100-setup.txt (del), i101-squirrel-param.txt (del)

judyjinn 2015-11-17 13:37 Rev.: 64

things

195 lines of code changed in 2 files:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+88 -66), i101-squirrel-param.txt (+107 -108)

judyjinn 2015-11-16 16:39 Rev.: 63

implemented SRreplenish. Fixed problems with food replenishing. Fixed whatever error was happening in the last commit. New problems: Neuronal computations are incorrect and outside of 1 to 20 range. Second, each time a predation even happens and finishes, the script will then run into an error. Possibly also due to the Neuronal Computations. Third, when reproducing the 3rd gen, the script errors with momchrom having an extraordinarily high number

180 lines of code changed in 2 files:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+174 -117), i101-squirrel-param.txt (+6 -6)

judyjinn 2015-11-16 11:26 Rev.: 62

Fixed fstomach(0) problem. It was using the fish routine instead of a squirrel one. Now working on error that occurs during SRpred_mort

80 lines of code changed in 1 file:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+80 -61)

judyjinn 2015-11-15 17:53 Rev.: 61

debugging for SReat. Currently stomkcals can be >0.0 but fstomach is 0.0. Have debugged SRpred_mort. Also made changes to Commonfish by removing unnecessary parameters. Also removed SRgenomecreate completely.

357 lines of code changed in 3 files:

• judy/squirrel: Commonfish_SNG.txt (+21 -48), HED24D_B_SNG_0210-1600.f90 (+331 -231), i101-squirrel-param.txt (+5 -4)

judyjinn 2015-11-13 12:21 Rev.: 60

Updated restart files. Code is compiling and running up until choosing movements. Possibly problems with gene creation for bud eff, acorn eff, and motor skills

43 lines of code changed in 2 files:

• judy/squirrel: Commonfish_SNG.txt (-15), HED24D_B_SNG_0210-1600.f90 (+43 -462)

judyjinn 2015-11-13 11:42 Rev.: 59

Added the genes to the restart file read/write. Code compiles but is having trouble reading the setup.txt file properly to add in the new genes.

102 lines of code changed in 2 files:

• judy/squirrel: BUILD_GCCsq.sh (+1 -1), HED24D_B_SNG_0210-1600.f90 (+101 -53)

judyjinn 2015-11-13 10:31 Rev.: 58

Updated code such that it actually will run with fish model now. Put in purpose if-then statements everywhere

276 lines of code changed in 2 files:

• judy/squirrel: Commonfish_SNG.txt (+2 -2), HED24D_B_SNG_0210-1600.f90 (+274 -226)

judyjinn 2015-11-12 17:32 Rev.: 57

Added in the environment creater with variable food resources for a basic environment. Added the predator mortality SR. Added tree_visiblity SR, Added ground_visibility SR. Reorganized SRforage: separated energy_burn into a different SR, moved kcals_g calculation to only SRgain_loss. Implemented SRmove. Implemented SRlearn motor skills. Script will compile.

1136 lines of code changed in 3 files:

• judy/squirrel: Commonfish_SNG.txt (+30 -5), HED24D_B_SNG_0210-1600.f90 (+1103 -164), i100-setup.txt (+3)

judyjinn 2015-11-10 16:04 Rev.: 56

added in variable foraging rates for state and efficiency. Still need to implement acorn array into individual arrays and also add the foraging efficiences. Code will compile

183 lines of code changed in 1 file:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+183 -116)

judyjinn 2015-11-09 09:08 Rev.: 53

no changes. commit just in case.

28 lines of code changed in 1 file:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+28 -3)

judyjinn 2015-11-05 11:31 Rev.: 52

Adding updates to SRforage to return all reals and update the visited variable. Will compile. Do not run.

50 lines of code changed in 1 file:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+50 -40)

judyjinn 2015-11-02 15:51 Rev.: 51

Added the squirrel starvation subroutine. Compiling fine

60 lines of code changed in 3 files:

• judy/squirrel: Commonfish_SNG.txt (+10 -6), HED24D_B_SNG_0210-1600.f90 (+49 -59), i101-squirrel-param.txt (+1 -1)

judyjinn 2015-11-02 14:21 Rev.: 50

Tree has been linked to foraging subroutine for the squirrels. Compiling correctly

143 lines of code changed in 1 file:

• judy/squirrel: HED24D_B_SNG_0210-1600.f90 (+143 -108)

judyjinn 2015-11-02 08:22 Rev.: 49

Added squirrel tree structure to SRlifecycle and SRsquirrellifespan, although these sections do not work still. Also added 3 subroutines for squirrel foraging, eating, and gaining/losing weight. These sections are fully functional once the squirrel tree structure habitat starts working too

850 lines of code changed in 3 files:

• judy/squirrel: Commonfish_SNG.txt (+191 -186), HED24D_B_SNG_0210-1600.f90 (+655 -358), i101-squirrel-param.txt (+4 -4)

judyjinn 2015-10-30 08:43 Rev.: 47

Corrected squirrel perceptions and began adding squirrel food script in SRsquirrellifespan

405 lines of code changed in 4 files:

• judy/squirrel: BUILD_GCCsq.sh (new 122), Commonfish_SNG.txt (+5 -3), HED24D_B_SNG_0210-1600.f90 (+269 -183), i101-squirrel-param.txt (+9 -9)

judyjinn 2015-10-28 18:01 Rev.: 45

Squirrel model does not work yet. Will not compile.

563 lines of code changed in 6 files:

• judy/squirrel: BUILD_GCC.sh (new), Commonfish_SNG.txt (new 184), HED24D_B_SNG_0210-1600.f90 (new 272), build.sh (new), i100-setup.txt (new), i101-squirrel-param.txt (new 107)