February 2020 Commit Log

Number of Commits:
116
Number of Active Developers:
4
sbu062 2020-02-29 22:26 Rev.: 9496

delete debug log remains

0 lines of code changed in 1 file:

sbu062 2020-02-29 09:42 Rev.: 9495

fix bug, `generation_two` must be allocated that is done by tyhe (init) method, deleting it was error

28 lines of code changed in 9 files:

sbu062 2020-02-28 13:36 Rev.: 9494

added `G1H` genomes from **b2** for loading

10002 lines of code changed in 2 files:

sbu062 2020-02-28 13:09 Rev.: 9493

added saved genome data, more to come

55011 lines of code changed in 11 files:

sbu062 2020-02-28 12:21 Rev.: 9492

branch of **b.3** with genome data read from file `genomes_000.csv`

44 lines of code changed in 17 files:

tla051 2020-02-28 12:05 Rev.: 9491

commit causes errors, second try

14 lines of code changed in 2 files:

tla051 2020-02-28 11:18 Rev.: 9490

fixed variabel names in plot

13 lines of code changed in 1 file:

tla051 2020-02-28 11:18 Rev.: 9489

removed temperature scaling [TL] - causing a bug

450 lines of code changed in 1 file:

tla051 2020-02-26 09:32 Rev.: 9488

tuned light measurments to observations from Bergen [TL]

3 lines of code changed in 1 file:

sbu062 2020-02-23 10:38 Rev.: 9487

merged changes in (allelescale) and (gamma2gene) backends from SIGMOID_tweak_new r9486

0 lines of code changed in 39 files:

sbu062 2020-02-21 19:55 Rev.: 9486

condition now obsolete

0 lines of code changed in 1 file:

sbu062 2020-02-21 19:28 Rev.: 9485

added parameter ALLELESCALE_MAX defining the maximum of the (allelescale) conversion function value. Older coode equivalent to setting ALLELESCALE_MAX=1.0_SRP; fixed comments to code change

12 lines of code changed in 1 file:

sbu062 2020-02-21 18:17 Rev.: 9484

(allelescale) uses a different rescaling using (rescale), range **0 to 20** rather than **0 to 1**

6 lines of code changed in 1 file:

sbu062 2020-02-21 18:07 Rev.: 9483

avoid underflow: check lower limit `ZERO` before conversion from `HRP` to `SRP`

10 lines of code changed in 1 file:

sbu062 2020-02-21 17:53 Rev.: 9482

(gamma2gene) backends use `HRP` kind to avoid crashes due to underflow/overflow with (allelescale) scaling

0 lines of code changed in 2 files:

sbu062 2020-02-21 17:37 Rev.: 9481

condition check for consistency with `CALC_Y`

4 lines of code changed in 1 file:

sbu062 2020-02-21 17:31 Rev.: 9480

reformat only

8 lines of code changed in 1 file:

sbu062 2020-02-21 17:29 Rev.: 9479

legend for integer `gs` `gh` values show both raw and rescaled arrays

0 lines of code changed in 2 files:

sbu062 2020-02-21 09:55 Rev.: 9477

added GRAFPACK from jburkardt

https://people.sc.fsu.edu/~jburkardt/f_src/grafpack/grafpack.html

38760 lines of code changed in 5 files:

cje012 2020-02-20 13:44 Rev.: 9476

Cleaned modelversion for publication with stochastic paper.

2389 lines of code changed in 5 files:

sbu062 2020-02-18 13:48 Rev.: 9475

the user `export_sb` is used only for export purposes, e.g. to import a project to GitHub, so real user's password is not exposed outside of the TEGsvn system. `export_sb`'s password can be easily changed after each use, because it is not used anywhere. It also has only **read-only** access

1 lines of code changed in 1 file:

sbu062 2020-02-17 13:15 Rev.: 9474

add link to image

2 lines of code changed in 1 file:

zed014 2020-02-17 09:42 Rev.: 9473

changed fwd r plot surface light by predation and ingestion rates

15 lines of code changed in 1 file:

cje012 2020-02-17 08:40

Minor but important update.

5 lines of code changed in 3 files:

cje012 2020-02-17 08:18 Rev.: 9469

Removed settings for double precision

2 lines of code changed in 1 file:

sbu062 2020-02-14 13:14 Rev.: 9468

stupid code that changes a constant in a subroutine, crash

19 lines of code changed in 1 file:

sbu062 2020-02-14 08:37 Rev.: 9467

comment added on decimal separator memory leak in dislin earlier (gwgflt)

10 lines of code changed in 1 file:

sbu062 2020-02-13 21:05 Rev.: 9466

(is_letter) now pure

2 lines of code changed in 1 file:

sbu062 2020-02-13 14:45 Rev.: 9465

fix wrong widget pasted

1 lines of code changed in 1 file:

sbu062 2020-02-13 13:01 Rev.: 9464

xmin and xmax now check user input for correct values

45 lines of code changed in 1 file:

sbu062 2020-02-13 12:24 Rev.: 9463

(is_digit) and (is_numeric) now `pure`

3 lines of code changed in 1 file:

zed014 2020-02-13 10:37 Rev.: 9462

Changed fwd and bwd r files:
melted all the bottom depths

Changed fortran file:
changed predator density and bottom depths

330 lines of code changed in 4 files:

sbu062 2020-02-13 09:49

fix a few typos

11 lines of code changed in 2 files:

sbu062 2020-02-13 09:45 Rev.: 9459

added basic readme with instructions

7 lines of code changed in 1 file:

sbu062 2020-02-12 14:43 Rev.: 9458

done save plot in menu item callback

3 lines of code changed in 1 file:

sbu062 2020-02-12 14:35 Rev.: 9457

allow shorter dirt names

2 lines of code changed in 1 file:

sbu062 2020-02-12 14:33 Rev.: 9456

ignore case in (extension_is_match)

2 lines of code changed in 1 file:

sbu062 2020-02-12 14:29 Rev.: 9455

check file name in csv data save

9 lines of code changed in 2 files:

sbu062 2020-02-12 14:20 Rev.: 9454

save current plot done for all plots

74 lines of code changed in 1 file:

sbu062 2020-02-12 13:32 Rev.: 9453

developing plot saving procedure, debug code

44 lines of code changed in 2 files:

sbu062 2020-02-12 12:19 Rev.: 9452

started doing code for print plot in GUI mode, callback for output format

43 lines of code changed in 3 files:

sbu062 2020-02-12 11:44 Rev.: 9451

get `DISLIN_Gui_Window_Width_Plotting` from environment variable `GUI_PLOT_AREA_WIDTH`

40 lines of code changed in 2 files:

sbu062 2020-02-12 10:46 Rev.: 9450

added gnuplot commands for plotting

8 lines of code changed in 1 file:

cje012 2020-02-12 07:32 Rev.: 9449

Changed instantaneous into short term on all axes

13 lines of code changed in 1 file:

sbu062 2020-02-11 10:11 Rev.: 9448

array parameters now accept parentheses notation as in Python, merged module r9447

58 lines of code changed in 1 file:

sbu062 2020-02-10 15:04 Rev.: 9447

environment variable `GUI_PLOT_AREA_WIDTH` has precedence over the configuration file

32 lines of code changed in 1 file:

sbu062 2020-02-10 13:38 Rev.: 9446

replot on each gh/gh array change

4 lines of code changed in 1 file:

sbu062 2020-02-10 13:28 Rev.: 9445

added OUTSTRIP subroutine to strip characters

11 lines of code changed in 2 files:

sbu062 2020-02-10 12:57 Rev.: 9444

environment variable `GUI_PLOT_AREA_WIDTH` now defines the plot area width (`DISLIN_Gui_Window_Width_Plotting`)

17 lines of code changed in 1 file:

tla051 2020-02-10 12:28 Rev.: 9443

changed from loop to melt to create dataframes [TL]

171 lines of code changed in 1 file:

sbu062 2020-02-10 12:24 Rev.: 9442

reorder gs/gh array types, raw go first

5 lines of code changed in 1 file:

sbu062 2020-02-10 12:14 Rev.: 9441

use parameter definition in selection

6 lines of code changed in 1 file:

sbu062 2020-02-10 12:07 Rev.: 9440

allow parentheses in array definitions in the configuration file

43 lines of code changed in 2 files:

zed014 2020-02-10 09:03 Rev.: 9439

changed the r plots
changed soøe fishes states parameters

2 lines of code changed in 1 file:

sbu062 2020-02-10 08:57 Rev.: 9438

test strip

30 lines of code changed in 1 file:

sbu062 2020-02-10 08:56 Rev.: 9437

subroutine to strip characters

32 lines of code changed in 1 file:

sbu062 2020-02-10 08:44 Rev.: 9436

cleanup test prog

64 lines of code changed in 1 file:

sbu062 2020-02-09 22:47 Rev.: 9435

cleanup everything

1 lines of code changed in 1 file:

sbu062 2020-02-09 22:41 Rev.: 9434

reformat

2 lines of code changed in 1 file:

sbu062 2020-02-09 22:40 Rev.: 9433

graphical parameter defaults in configuration file

40 lines of code changed in 2 files:

sbu062 2020-02-09 22:39 Rev.: 9432

optional default value in (PTread_r) as in (PTread_d)

8 lines of code changed in 1 file:

sbu062 2020-02-08 14:10 Rev.: 9431

reverted from test 3d plotting
- `svn merge -r HEAD:9429 .`

9 lines of code changed in 1 file:

sbu062 2020-02-08 14:03 Rev.: 9430

test 3d plot with gh as Y dimension, incomplete test
- components must be **1**
- set **float** array type
- works and plots 3d

26 lines of code changed in 1 file:

sbu062 2020-02-08 12:59 Rev.: 9429

report computaional engine revision, `commondata` module

14 lines of code changed in 1 file:

sbu062 2020-02-08 12:05 Rev.: 9428

better labels for gh and gs parameters

6 lines of code changed in 1 file:

sbu062 2020-02-08 11:57 Rev.: 9427

better fit legend

13 lines of code changed in 1 file:

sbu062 2020-02-08 11:08 Rev.: 9426

autogenerate Windows gui startup vbs script

18 lines of code changed in 1 file:

sbu062 2020-02-08 01:42 Rev.: 9425

check file name, cancel short

18 lines of code changed in 1 file:

sbu062 2020-02-08 00:56 Rev.: 9424

now can build on Windows, weird 2-stage DISLIN link: gfortran

7 lines of code changed in 1 file:

sbu062 2020-02-08 00:52 Rev.: 9423

fix bug version parser

1 lines of code changed in 1 file:

sbu062 2020-02-07 23:51 Rev.: 9422

parse and report svn version for the main program

23 lines of code changed in 1 file:

sbu062 2020-02-07 23:32 Rev.: 9421

added header info and revision id tags

11 lines of code changed in 2 files:

sbu062 2020-02-07 23:27 Rev.: 9420

save plot data to CSV

66 lines of code changed in 1 file:

sbu062 2020-02-07 22:58 Rev.: 9419

cleanup code

3 lines of code changed in 1 file:

sbu062 2020-02-07 22:56 Rev.: 9418

save plot menu with plot format parse

57 lines of code changed in 1 file:

sbu062 2020-02-07 22:05 Rev.: 9417

replot on change of some parameters, axes labels

9 lines of code changed in 1 file:

sbu062 2020-02-07 21:53 Rev.: 9416

reformat code

14 lines of code changed in 1 file:

sbu062 2020-02-07 21:47 Rev.: 9415

cleanup

8 lines of code changed in 1 file:

sbu062 2020-02-07 21:14 Rev.: 9414

gui cleanup, quit button back

4 lines of code changed in 1 file:

sbu062 2020-02-07 21:04 Rev.: 9413

user adjustable scales

47 lines of code changed in 1 file:

sbu062 2020-02-07 20:15 Rev.: 9412

arbitrary scaling in plot

25 lines of code changed in 1 file:

sbu062 2020-02-07 16:50 Rev.: 9411

global format string for float values

5 lines of code changed in 1 file:

sbu062 2020-02-07 16:45 Rev.: 9410

(update_table) updates data table after each data edit

39 lines of code changed in 1 file:

sbu062 2020-02-07 15:46 Rev.: 9409

fix and delete debug prints

3 lines of code changed in 1 file:

sbu062 2020-02-07 15:40 Rev.: 9408

comments on building with 32 and 64 bit DISLIN library versions

4 lines of code changed in 1 file:

sbu062 2020-02-07 15:35 Rev.: 9407

fix gfortran build error, probably compiler bug
- Intel Fortran buil ok without `0.0_SRP` optional
- GNU gfortran resulted in build error: `Error: Incompatible ranks 0 and 1 in assignment at (1)` without `0.0_SRP` optional set explicitly, probably **compiler bug**

1 lines of code changed in 1 file:

sbu062 2020-02-07 15:30 Rev.: 9406

fix bug in parameters, must propagate to other `HEDG2_` (ln.3115)

1 lines of code changed in 1 file:

sbu062 2020-02-07 14:57 Rev.: 9405

fix broken build on Intel Fortran

2 lines of code changed in 1 file:

sbu062 2020-02-07 14:48 Rev.: 9404

non-correct changes, see ln. 544

206 lines of code changed in 2 files:

zed014 2020-02-07 11:57 Rev.: 9403

changing some fish state parameters
output fwd: desactivated 2 lines: there are dubles!
Change the forward plots

54 lines of code changed in 4 files:

sbu062 2020-02-07 10:45 Rev.: 9402

ck routine to n additive componants in GUI

24 lines of code changed in 1 file:

sbu062 2020-02-07 08:27 Rev.: 9401

toggle button for legend

28 lines of code changed in 1 file:

sbu062 2020-02-06 23:27 Rev.: 9400

more labels on plot

4 lines of code changed in 1 file:

sbu062 2020-02-06 13:35 Rev.: 9399

fix interfaces

99 lines of code changed in 1 file:

sbu062 2020-02-06 12:49 Rev.: 9398

rearrange widgets, array entry non-table

25 lines of code changed in 1 file:

sbu062 2020-02-06 11:33 Rev.: 9397

deleted debug code

2 lines of code changed in 1 file:

sbu062 2020-02-06 11:30 Rev.: 9396

done list widget callback function

92 lines of code changed in 1 file:

sbu062 2020-02-06 10:00 Rev.: 9395

selector for integer(auto-allelescale) or real (raw) gene array values

6 lines of code changed in 1 file:

sbu062 2020-02-06 09:19 Rev.: 9394

use default parameters if configuration file absent

26 lines of code changed in 1 file:

sbu062 2020-02-06 07:48 Rev.: 9393

added any arbitrary number of addivive components

23 lines of code changed in 2 files:

sbu062 2020-02-05 22:39 Rev.: 9392

more gui

9 lines of code changed in 1 file:

sbu062 2020-02-05 22:17 Rev.: 9391

started adding windows gui

143 lines of code changed in 2 files:

sbu062 2020-02-05 15:00 Rev.: 9390

looped data show

7 lines of code changed in 1 file:

sbu062 2020-02-05 14:54 Rev.: 9389

further add to skeleton

61 lines of code changed in 1 file:

sbu062 2020-02-05 14:53 Rev.: 9388

added default parameters file

10 lines of code changed in 1 file:

sbu062 2020-02-05 14:53 Rev.: 9387

module internal error messages more clear

13 lines of code changed in 1 file:

sbu062 2020-02-05 14:26 Rev.: 9386

added parameter parsing library

478 lines of code changed in 3 files:

sbu062 2020-02-05 14:23 Rev.: 9385

further tests

4 lines of code changed in 1 file:

sbu062 2020-02-05 14:19 Rev.: 9384

calculation backend for testing builds and works

12 lines of code changed in 1 file:

sbu062 2020-02-05 14:04 Rev.: 9383

fixed makefile for correct build

649 lines of code changed in 1 file:

sbu062 2020-02-05 13:48 Rev.: 9382

skeleton

23 lines of code changed in 1 file:

sbu062 2020-02-05 13:45 Rev.: 9381

start main gui empty file yet

0 lines of code changed in 1 file:

sbu062 2020-02-05 13:44 Rev.: 9380

essential copy from HRDG1 base model

9827 lines of code changed in 1 file:

zed014 2020-02-04 13:31 Rev.: 9378

Fortran file:
-new bottom depth values
-new output comments
-change dens of epipelagic fish: 1.0E-5 -> 5.0E-6
-put the prey_lowtroph_3d output in the bottom depth loop
-change initialization output_fwd(:,:,:,:) = 0 in output_fwd(:,bottom,:,:) = 0
-output a file with the depths, used then in the r file

52 lines of code changed in 4 files:

tla051 2020-02-03 15:01 Rev.: 9377

fix bug in bottom_depth loop

44 lines of code changed in 2 files:

zed014 2020-02-03 13:38 Rev.: 9376

Loop created for diff bottom depths:

In the model,
-loop with bottom depth added in the main program,
-in the loop, z_max replaced by the bottom depth,
-2 variables linked with the loop added to the declarations in the main program,
-array of the bottom depths targeted + integer of the nb of bottom depths targeted added in the global params,
-bottom depth variable added to the bwd and fwd output (declaration and program) in the main program,

in the r bwd / fwd output program,
-loop that create and save a plot for each bottom depth added
-in plot nb 3 of each bottom depth plots, predation risk replaced by preyfield

645 lines of code changed in 4 files:

January 2020 »

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