November 2015 Commit Log

Number of Commits:
63
Number of Active Developers:
3
sbu062 2015-11-30 13:44 Rev.: 117

Initial adaptation for the event logger in BASE_UTILS and CSV_IO

298 lines of code changed in 4 files:

sbu062 2015-11-28 23:11 Rev.: 116

Further fixed whole matrix/array functions in CSV_IO module for tables with lots of small numbers. Demo MODEL_PROTO works right

50 lines of code changed in 4 files:

sbu062 2015-11-28 13:41 Rev.: 115

Fixed fhole MATRIX and ARRAY functions in CSV_IO module to work with big arbitrary-size records

216 lines of code changed in 4 files:

sbu062 2015-11-27 23:50 Rev.: 114

Minor change

3 lines of code changed in 1 file:

sbu062 2015-11-27 23:42 Rev.: 113

Added generic interfaces for array data to TOSTR (BASE_UTILS), produced a prototype model in tests directory

701 lines of code changed in 6 files:

judyjinn 2015-11-26 14:25 Rev.: 112

Copied tree to new individuals in SRgenecreate and also randomized trees for new randomized individuals

69 lines of code changed in 3 files:

judyjinn 2015-11-26 12:43 Rev.: 111

Changed mult() to manually set each value as +/-1. Added different ways to compute perceptions

235 lines of code changed in 3 files:

rdi003 2015-11-26 11:54 Rev.: 110

working. more refactoring, commented out squirrel portions

1450 lines of code changed in 1 file:

sbu062 2015-11-25 23:21 Rev.: 109

Maintenance, fixed comments / docs, LOGGER module now working and tested

65 lines of code changed in 6 files:

sbu062 2015-11-25 16:37 Rev.: 108

Logger module is now more or less working

53 lines of code changed in 3 files:

sbu062 2015-11-25 15:39 Rev.: 107

Small modification of BASE_UTILS, added initial execution LOGGER and ASSERTION modules

661 lines of code changed in 3 files:

sbu062 2015-11-25 14:14 Rev.: 106

Portability: Finally fixed the miracluous Solaris fortran bug, added CLEANUP function to BASE_UTILS module

65 lines of code changed in 3 files:

sbu062 2015-11-25 10:16 Rev.: 105

Fixed bug caused by correcting Solaris compiler bug in BASE_UTIL, added output subs

186 lines of code changed in 3 files:

sbu062 2015-11-25 09:10 Rev.: 104

Portability:: Located an Oracle Solaris compiler bug in string manipulation utils, did a workaround for BASE_UTILS

48 lines of code changed in 4 files:

sbu062 2015-11-24 15:11 Rev.: 103

Fix comments/docs for BASE_UTILS.f90

45 lines of code changed in 3 files:

sbu062 2015-11-24 14:36 Rev.: 102

String conversion functions in BASE_UTILS now ready

52 lines of code changed in 3 files:

sbu062 2015-11-24 13:51 Rev.: 101

Little changes in test program and small reorganisation

58 lines of code changed in 3 files:

judyjinn 2015-11-24 11:46 Rev.: 100

Attempting to find error with squirrel movements. Have added conditions to the appraisal phases such that responses are dependent on which part of the environment they are in

348 lines of code changed in 5 files:

sbu062 2015-11-24 11:33 Rev.: 99

Added a few other modules and prototypes for new generation models

1014 lines of code changed in 8 files:

sbu062 2015-11-24 10:27 Rev.: 98

A little reorganisation + versioned project file for Geany (unix)

4 lines of code changed in 3 files:

sbu062 2015-11-24 05:16 Rev.: 95

Added functions to write one-dimensional arrays to CSV, along with generic interfaces

270 lines of code changed in 2 files:

rdi003 2015-11-23 15:50 Rev.: 94

no build erros, finished run with 300 gen 300 lifespan 20 attackrate

262 lines of code changed in 1 file:

sbu062 2015-11-22 22:27 Rev.: 93

Added functions for whole matrix export to CSV, with generic interfaces

284 lines of code changed in 2 files:

sbu062 2015-11-22 08:42 Rev.: 92

A little refactoring...

23 lines of code changed in 1 file:

sbu062 2015-11-22 07:48 Rev.: 91

Added generic interface to CSV_RECORD_APPEND

42 lines of code changed in 2 files:

rdi003 2015-11-20 15:27 Rev.: 90

fixed genomeMOD, etc errors. have dimension indexing problem at 6632 with chromuse now, some parameter and build script changes

6100 lines of code changed in 5 files:

rdi003 2015-11-20 14:39 Rev.: 89

copied my script with symlinks and config copies to scripts/BUILD_GCC.sh. This prevents the need to delete outputs_Linux, while still backing up the configs to outputs

33 lines of code changed in 1 file:

sbu062 2015-11-20 13:26 Rev.: 88

Added base module CSV_IO for working (now almost exclusively Out) with the CSV file format

1101 lines of code changed in 2 files:

judyjinn 2015-11-19 10:12 Rev.: 87

Code compiling and running into a genomemod out of bounds error around the 21st generation. Currently debugging why squirrels are in fear state and only moving in positive direciton.

2874 lines of code changed in 1 file:

judyjinn 2015-11-18 14:57 Rev.: 86

fixed the bug from last commit. forgot to copy stomkcals when copying individuals in SRgenecreate

2 lines of code changed in 1 file:

rdi003 2015-11-18 13:15 Rev.: 85

modified .svnignore

11 lines of code changed in 1 file:

rdi003 2015-11-18 13:12 Rev.: 84

paired down to just HED24 files

14468 lines of code changed in 6 files:

judyjinn 2015-11-18 12:46 Rev.: 83

changed the boost fecundity line back to the original

1 lines of code changed in 1 file:

judyjinn 2015-11-18 12:39 Rev.: 82

Updated the files to match current squirrel model. Still running into genomemod out of bounds error for generation 21 and only generation 21. Needs to be fixed.

179 lines of code changed in 2 files:

rdi003 2015-11-18 12:34 Rev.: 81

testing svnignore

25 lines of code changed in 1 file:

judyjinn 2015-11-18 12:20 Rev.: 80

running into the MomChrom error. Also, this file is totaly screwed up for the fish model. do not use. Might be related to taking things out of commonfish and deleting SRgenomecreate

1 lines of code changed in 1 file:

judyjinn 2015-11-18 12:19 Rev.: 79

No idea. I'm just backing up the fish files...

0 lines of code changed in 1 file:

rdi003 2015-11-18 12:17 Rev.: 78

added git repo and .svnignore

1 lines of code changed in 1 file:

judyjinn 2015-11-18 11:59 Rev.: 77

test

1 lines of code changed in 1 file:

judyjinn 2015-11-18 11:35 Rev.: 76

removed old HED file name and replaced with a generic one

0 lines of code changed in 2 files:

judyjinn 2015-11-18 10:34 Rev.: 75

fixed the NR move calcuation error

3 lines of code changed in 1 file:

judyjinn 2015-11-18 10:29 Rev.: 74

fixing the SRdecisions neuronal responses. Currently bugging out on moving risk

49 lines of code changed in 2 files:

rdi003 2015-11-17 14:52 Rev.: 72

made trunk and branches directories more simply

20 lines of code changed in 48 files:

rdi003 2015-11-17 14:05 Rev.: 71

moved main repo contents to dir and judy branch to dir, where other new branches can be made.

0 lines of code changed in 44 files:

rdi003 2015-11-17 14:02 Rev.: 70

moved main repo contents to trunk. removed judy, branches, trunk dirs, which now live under main repo

0 lines of code changed in 51 files:

rdi003 2015-11-17 13:58 Rev.: 69

importing main repo contents to `trunk` directory. need to remove branches, trunk, judy dirs after import

171 lines of code changed in 74 files:

rdi003 2015-11-17 13:54 Rev.: 68

importing judy branch

3162 lines of code changed in 25 files:

judyjinn 2015-11-17 13:37 Rev.: 64

things

195 lines of code changed in 2 files:

judyjinn 2015-11-16 16:39 Rev.: 63

implemented SRreplenish. Fixed problems with food replenishing. Fixed whatever error was happening in the last commit. New problems: Neuronal computations are incorrect and outside of 1 to 20 range. Second, each time a predation even happens and finishes, the script will then run into an error. Possibly also due to the Neuronal Computations. Third, when reproducing the 3rd gen, the script errors with momchrom having an extraordinarily high number

180 lines of code changed in 2 files:

judyjinn 2015-11-16 11:26 Rev.: 62

Fixed fstomach(0) problem. It was using the fish routine instead of a squirrel one. Now working on error that occurs during SRpred_mort

80 lines of code changed in 1 file:

judyjinn 2015-11-15 17:53 Rev.: 61

debugging for SReat. Currently stomkcals can be >0.0 but fstomach is 0.0. Have debugged SRpred_mort. Also made changes to Commonfish by removing unnecessary parameters. Also removed SRgenomecreate completely.

357 lines of code changed in 3 files:

judyjinn 2015-11-13 12:21 Rev.: 60

Updated restart files. Code is compiling and running up until choosing movements. Possibly problems with gene creation for bud eff, acorn eff, and motor skills

43 lines of code changed in 2 files:

judyjinn 2015-11-13 11:42 Rev.: 59

Added the genes to the restart file read/write. Code compiles but is having trouble reading the setup.txt file properly to add in the new genes.

102 lines of code changed in 2 files:

judyjinn 2015-11-13 10:31 Rev.: 58

Updated code such that it actually will run with fish model now. Put in purpose if-then statements everywhere

276 lines of code changed in 2 files:

judyjinn 2015-11-12 17:32 Rev.: 57

Added in the environment creater with variable food resources for a basic environment. Added the predator mortality SR. Added tree_visiblity SR, Added ground_visibility SR. Reorganized SRforage: separated energy_burn into a different SR, moved kcals_g calculation to only SRgain_loss. Implemented SRmove. Implemented SRlearn motor skills. Script will compile.

1136 lines of code changed in 3 files:

judyjinn 2015-11-10 16:04 Rev.: 56

added in variable foraging rates for state and efficiency. Still need to implement acorn array into individual arrays and also add the foraging efficiences. Code will compile

183 lines of code changed in 1 file:

sbu062 2015-11-09 23:01 Rev.: 55

Very little change to avoid array bounds d = fgender(ind) due to uninitialised ind

179 lines of code changed in 1 file:

sbu062 2015-11-09 10:25 Rev.: 54

HEDTOOLS will contain tools and modules for the next generation model. Now empty (only Roadmap)

0 lines of code changed in 1 file:

judyjinn 2015-11-09 09:08 Rev.: 53

no changes. commit just in case.

28 lines of code changed in 1 file:

judyjinn 2015-11-05 11:31 Rev.: 52

Adding updates to SRforage to return all reals and update the visited variable. Will compile. Do not run.

50 lines of code changed in 1 file:

judyjinn 2015-11-02 15:51 Rev.: 51

Added the squirrel starvation subroutine. Compiling fine

60 lines of code changed in 3 files:

judyjinn 2015-11-02 14:21 Rev.: 50

Tree has been linked to foraging subroutine for the squirrels. Compiling correctly

143 lines of code changed in 1 file:

judyjinn 2015-11-02 08:22 Rev.: 49

Added squirrel tree structure to SRlifecycle and SRsquirrellifespan, although these sections do not work still. Also added 3 subroutines for squirrel foraging, eating, and gaining/losing weight. These sections are fully functional once the squirrel tree structure habitat starts working too

850 lines of code changed in 3 files:

October 2015 »

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