January 2017 Commit Log

Number of Commits:
218
Number of Active Developers:
6
sbu062 2017-01-31 17:11 Rev.: 2578

debug code

13 lines of code changed in 1 file:

sbu062 2017-01-31 15:37 Rev.: 2577

further merge, did code cleanup

55 lines of code changed in 1 file:

sbu062 2017-01-31 15:32 Rev.: 2576

further cleanup code, added log tags for searching

28 lines of code changed in 1 file:

jwe041 2017-01-31 14:55 Rev.: 2575

added reserves_max to ind-matrix

removed length from interpolation of chance_of_max_length

7 lines of code changed in 1 file:

cje012 2017-01-31 14:49 Rev.: 2574

Replaced my Hormones_v2.f90 file with the one from trunk.

108 lines of code changed in 1 file:

sbu062 2017-01-31 14:44 Rev.: 2573

further cleanup, fix generation_two init prevents crashing, debug code only 10 individuals do walk for short generations

46 lines of code changed in 1 file:

jwe041 2017-01-31 14:21 Rev.: 2572

removed typing errors

2 lines of code changed in 1 file:

jwe041 2017-01-31 14:19 Rev.: 2571

removed length as factor from interpolation of hormones in forward simulation

changed THF_SMR_effect in calculation of O2_max into THF_O2max_effect

11 lines of code changed in 1 file:

sbu062 2017-01-31 13:55 Rev.: 2570

merged latest

71 lines of code changed in 1 file:

sbu062 2017-01-31 13:49 Rev.: 2569

added sex to (population_save_data_all_agents_csv)

10 lines of code changed in 1 file:

sbu062 2017-01-31 13:42 Rev.: 2568

done LTAG_TIMER

8 lines of code changed in 1 file:

sbu062 2017-01-31 13:22 Rev.: 2567

now using logger tags done at the previous revision in logger output, so far INFO: and WARNING: changed

38 lines of code changed in 1 file:

sbu062 2017-01-31 13:06 Rev.: 2566

added standard log tags

13 lines of code changed in 1 file:

sbu062 2017-01-31 12:50 Rev.: 2565

micro reformat

2 lines of code changed in 1 file:

sbu062 2017-01-31 12:49 Rev.: 2564

merged my latest changes

293 lines of code changed in 1 file:

sbu062 2017-01-31 12:29 Rev.: 2563

reordered variables in (population_save_data_all_agents_csv)

9 lines of code changed in 1 file:

sbu062 2017-01-31 12:22 Rev.: 2562

reformatted (population_save_data_all_agents_csv) for visibility of arrays in (reshape)

28 lines of code changed in 1 file:

sbu062 2017-01-31 12:16 Rev.: 2561

added logical to numeric conversion sub-functions in (population_save_data_all_agents_csv)

75 lines of code changed in 1 file:

sbu062 2017-01-31 11:46 Rev.: 2560

now using (save_csv) method in SAVE_DATA_INDS block

1 lines of code changed in 1 file:

sbu062 2017-01-31 11:44 Rev.: 2559

implemented subroutine to save data for a population of agents into csv (population_save_data_all_agents_csv)

64 lines of code changed in 1 file:

sbu062 2017-01-30 19:26 Rev.: 2558

fixed (population_rwalk25d_all_agents_step), missing dist_all_depth, divide now default vertical walk step to 1/2 agent's length

13 lines of code changed in 1 file:

sbu062 2017-01-30 15:39 Rev.: 2557

interface added (rwalk25d)

1 lines of code changed in 1 file:

sbu062 2017-01-30 15:31 Rev.: 2556

fix and cleanup

23 lines of code changed in 1 file:

sbu062 2017-01-30 15:22 Rev.: 2555

mass random walk procedure (population_rwalk25d_all_agents_step) in 2.5 d, separate depth

147 lines of code changed in 1 file:

sbu062 2017-01-30 10:38 Rev.: 2554

added a test lab for lars: LARS_TEST_LAB

236 lines of code changed in 1 file:

sbu062 2017-01-27 22:30 Rev.: 2552

merged my latest changes, disabled stop before manual debug loop

347 lines of code changed in 2 files:

sbu062 2017-01-27 22:20 Rev.: 2551

updated changelog

24 lines of code changed in 1 file:

sbu062 2017-01-27 22:14 Rev.: 2550

fixed strange bug with all-zeroes in history instead of MISSING, caused by name conflict of (history_clean) in both SPATIAL_MOVING and CONDITION, now two procedures: (spatial_history_clean) and (body_history_clean); debug code

9 lines of code changed in 1 file:

sbu062 2017-01-27 18:00 Rev.: 2549

arbitrary number of steps in (population_rwalk3d_all_agents_step) by n_walks parameter; debug code save agents' spatial history

80 lines of code changed in 1 file:

sbu062 2017-01-27 16:59 Rev.: 2548

initial implementation of random walk for whole population object (population_rwalk3d_all_agents_step) , so far non- parallel; more cleanup code

109 lines of code changed in 1 file:

sbu062 2017-01-27 14:12 Rev.: 2547

code cleanup

135 lines of code changed in 1 file:

sbu062 2017-01-27 13:10 Rev.: 2546

small cleanup

19 lines of code changed in 1 file:

sbu062 2017-01-27 10:22 Rev.: 2545

got rid of THE_MODEL module, moved to THE_EVOLUTION

24 lines of code changed in 1 file:

cje012 2017-01-27 09:51 Rev.: 2544

Added information about how to use diff with colours. Thank you so much Sergey!

3 lines of code changed in 1 file:

jwe041 2017-01-27 08:44 Rev.: 2543

moved calculation of reserves_max in forward simulation

93 lines of code changed in 1 file:

sbu062 2017-01-27 05:58 Rev.: 2542

merged by latest changes, the_model module and separated environmental init

161 lines of code changed in 2 files:

sbu062 2017-01-27 05:54 Rev.: 2541

reverted SWIMMING_SPEED_COST_BURST to 0.1E-3_SRP, avoids excessive die outs

1 lines of code changed in 1 file:

sbu062 2017-01-27 05:51 Rev.: 2540

formats and comments, small

2 lines of code changed in 1 file:

sbu062 2017-01-27 05:40 Rev.: 2539

deleted histograms of food depth, non-informative

4 lines of code changed in 1 file:

sbu062 2017-01-27 05:37 Rev.: 2538

added module THE_MODEL for global objects that cannot be placed in COMMONDATA and scheduling objects, moved environmental inits to (init_environment) in THE_MODEL

146 lines of code changed in 1 file:

sbu062 2017-01-26 21:18 Rev.: 2537

changelog updated

21 lines of code changed in 1 file:

sbu062 2017-01-26 21:15 Rev.: 2535

merged todays changes

90 lines of code changed in 1 file:

sbu062 2017-01-26 21:01 Rev.: 2534

small reformat

2 lines of code changed in 1 file:

sbu062 2017-01-26 20:59 Rev.: 2533

minor reorder (init_condition)

1 lines of code changed in 1 file:

sbu062 2017-01-26 20:57 Rev.: 2532

init neurobiology in debug code disabled, now done in standard 'init'

8 lines of code changed in 1 file:

sbu062 2017-01-26 20:50 Rev.: 2531

implemented (init_neuro) deleted duplicating (neurobio_create_zero), use init_neuro in init of individual agen; did (timer_cpu_show) for formatted timer

31 lines of code changed in 1 file:

sbu062 2017-01-26 14:22 Rev.: 2530

perception init procedures now elemental, init all agents' neurobio single command (parallilizable)

24 lines of code changed in 1 file:

sbu062 2017-01-26 13:47 Rev.: 2529

rename (gos_init) to (init_gos) for consistency; made elemental procedure; more debug log

6 lines of code changed in 1 file:

cje012 2017-01-26 13:44 Rev.: 2528

Found and error in the code and changed it. reserves_max should be calculated every time step and not only once for each individual.

2 lines of code changed in 1 file:

cje012 2017-01-26 13:42 Rev.: 2527

Changed to reflect the new changes in the main code

6 lines of code changed in 1 file:

sbu062 2017-01-26 13:37

merged latest change

0 lines of code changed in 3 files:

sbu062 2017-01-26 13:35 Rev.: 2524

replace log image from real debug log

0 lines of code changed in 1 file:

sbu062 2017-01-26 12:58 Rev.: 2523

fixed memory-addition procedures in MEMORY_EMOTIONAL, added gos_repeated

26 lines of code changed in 1 file:

jwe041 2017-01-26 12:50 Rev.: 2522

typing error

7 lines of code changed in 1 file:

cje012 2017-01-26 12:45

Added from trunk

467 lines of code changed in 2 files:

cje012 2017-01-26 12:42 Rev.: 2519

Changed to reflect the changes in trunk

195 lines of code changed in 1 file:

cje012 2017-01-26 12:42 Rev.: 2518

Changed to reflect the changes in trunk^C

17 lines of code changed in 1 file:

nzlcj 2017-01-26 12:15 Rev.: 2517

Coded together. Minor changes in initialization in forward code.

8 lines of code changed in 1 file:

jwe041 2017-01-26 11:55 Rev.: 2516

rewrote writing to ind

12 lines of code changed in 1 file:

sbu062 2017-01-26 11:49

merged latest change in doc (index)

4 lines of code changed in 2 files:

sbu062 2017-01-26 11:48 Rev.: 2513

added index

2 lines of code changed in 1 file:

jwe041 2017-01-26 11:47 Rev.: 2512

rewrote code, added clear workspace

41 lines of code changed in 2 files:

sbu062 2017-01-26 11:44 Rev.: 2511

merged update in the doc manual on required software for runninng the model: grep and expr

0 lines of code changed in 2 files:

sbu062 2017-01-26 11:43 Rev.: 2510

merged latest change in doc, required software section

19 lines of code changed in 1 file:

sbu062 2017-01-26 11:41 Rev.: 2509

added mandatory GNU utils for Windows, Cygwin cecommended, TODO deleted

19 lines of code changed in 1 file:

lla008 2017-01-26 10:22 Rev.: 2508

Small file for plotting

0 lines of code changed in 1 file:

sbu062 2017-01-26 09:10 Rev.: 2507

merged my latest changes

26 lines of code changed in 1 file:

sbu062 2017-01-26 09:05 Rev.: 2506

added (gos_init) to class interface

1 lines of code changed in 1 file:

sbu062 2017-01-26 09:03 Rev.: 2505

added gos repeat history, added gos init to zero subroutine

24 lines of code changed in 1 file:

sbu062 2017-01-26 08:36 Rev.: 2504

added gos_arousal to history update

5 lines of code changed in 1 file:

sbu062 2017-01-25 18:47 Rev.: 2503

merged my today's changes

152 lines of code changed in 2 files:

sbu062 2017-01-25 18:38 Rev.: 2502

changelog update

25 lines of code changed in 1 file:

sbu062 2017-01-25 18:37 Rev.: 2501

optional parameter to save history stack for body mass and length in (mass_grow) and (len_grow)

22 lines of code changed in 1 file:

sbu062 2017-01-25 16:51 Rev.: 2500

fix history add missing body length to history after subtract living cost in debug code

3 lines of code changed in 1 file:

cje012 2017-01-25 15:32 Rev.: 2499

Minor change.

6 lines of code changed in 1 file:

sbu062 2017-01-25 15:26 Rev.: 2498

restored cost of food processing deendent on food item mass, restored parameter FOOD_ITEM_CAPTURE_PROP_COST; reduced SWIMMING_SPEED_COST_BURST factor parameter; fix log

10 lines of code changed in 1 file:

cje012 2017-01-25 15:20 Rev.: 2497

Found an error in forward, where I changed reserves_new to reserves_change. Also removed file numbers from printing.

196 lines of code changed in 1 file:

glj042 2017-01-25 14:51 Rev.: 2496

Gabbi

331 lines of code changed in 1 file:

sbu062 2017-01-25 14:50 Rev.: 2495

minor comment TODO

2 lines of code changed in 1 file:

nzlcj 2017-01-25 14:41

Coded together - made some minor changes to account for changes in Fortran code.

20 lines of code changed in 2 files:

nzlcj 2017-01-25 14:40 Rev.: 2492

Coded together. Rewrote parts of forward. Fixed some bugs, including reserves interpolation in backwards now related to L_new. Encountered U-shape effect on fitness of growth hormone - need to understand why.

59 lines of code changed in 1 file:

sbu062 2017-01-25 14:24 Rev.: 2491

minor fix comment

2 lines of code changed in 1 file:

sbu062 2017-01-25 14:22 Rev.: 2490

fix logging in (dies_debug)

4 lines of code changed in 1 file:

sbu062 2017-01-25 14:07 Rev.: 2489

fix forgotten save GOS memory in (gos_find), fix logging in (dies_debug)

5 lines of code changed in 1 file:

sbu062 2017-01-25 13:17 Rev.: 2488

more logging for (dies_debug)

3 lines of code changed in 1 file:

sbu062 2017-01-25 13:00 Rev.: 2487

fix negative stomach content mass in (stomach_content_get_increment), more log data in (dies_debug)

6 lines of code changed in 1 file:

sbu062 2017-01-25 12:27 Rev.: 2486

minor fix output

1 lines of code changed in 1 file:

sbu062 2017-01-25 12:26 Rev.: 2485

in debug code now turns on cost of swimming

1 lines of code changed in 1 file:

sbu062 2017-01-25 12:24 Rev.: 2484

increased swimming cost SWIMMING_SPEED_COST_BURST; allocatable and trimmed output in (genome_label_get), debug version of the (dies) function (dies_debug) in MEMBER_POPULATION, debug code

78 lines of code changed in 1 file:

sbu062 2017-01-25 10:20 Rev.: 2483

merged my yesterday's changes

95 lines of code changed in 3 files:

sbu062 2017-01-25 10:15 Rev.: 2482

merged yeaterday's changes from my branch of the tools

0 lines of code changed in 4 files:

jwe041 2017-01-25 09:37 Rev.: 2481

added figure for fitness-matrix

48 lines of code changed in 2 files:

sbu062 2017-01-25 09:14 Rev.: 2480

testing how to commit, added random string

0 lines of code changed in 2 files:

jwe041 2017-01-25 08:33 Rev.: 2479

Change to figure (fitnessconsequences)

36 lines of code changed in 1 file:

sbu062 2017-01-25 07:26 Rev.: 2478

changelog update

59 lines of code changed in 1 file:

sbu062 2017-01-24 18:52 Rev.: 2477

merged latest changes from my branch: purified base utils

425 lines of code changed in 3 files:

sbu062 2017-01-24 18:48 Rev.: 2476

changelog updated

29 lines of code changed in 1 file:

sbu062 2017-01-24 18:37 Rev.: 2475

added two pure sub-versions for LINTERPOL , the whole module is now fully 'purified'

180 lines of code changed in 1 file:

sbu062 2017-01-24 18:24 Rev.: 2474

set explicit 'intent' and made procedures 'pure', so far except (LINTERPOL)

49 lines of code changed in 1 file:

jwe041 2017-01-24 14:59 Rev.: 2473

0 lines of code changed in 2 files:

jwe041 2017-01-24 14:58 Rev.: 2472

Changes to calculation of reserves in forward simulation

36 lines of code changed in 1 file:

sbu062 2017-01-24 14:25 Rev.: 2471

reduced food size variability FOOD_ITEM_SIZE_DEFAULT_CV, was too high leading to huge food items much exceeding maxstomcap

1 lines of code changed in 1 file:

sbu062 2017-01-24 13:52 Rev.: 2470

in (eat_food_item_do_execute) calling (len_grow) before body mass grow; added more logging

35 lines of code changed in 1 file:

nzlcj 2017-01-24 12:04

Changed folder for writing together.

8 lines of code changed in 2 files:

nzlcj 2017-01-24 12:03 Rev.: 2467

Made small chanegs together for compatibiity between machines.

0 lines of code changed in 1 file:

jwe041 2017-01-24 11:33 Rev.: 2464

figures from forward simulation

151 lines of code changed in 1 file:

jwe041 2017-01-24 11:32 Rev.: 2463

Strategy-matrix (figure)

1 lines of code changed in 1 file:

sbu062 2017-01-24 10:21 Rev.: 2462

cleanup and debug code

21 lines of code changed in 1 file:

sbu062 2017-01-24 09:25 Rev.: 2461

cleanup code rename (cost_swim_burst) backend, deleted obsolete (cost_subtract)

5 lines of code changed in 1 file:

sbu062 2017-01-24 05:37 Rev.: 2460

return to higher ENERGY_INIT and ENERGY_GERROR_CV values, very small crash

2 lines of code changed in 1 file:

sbu062 2017-01-24 05:21 Rev.: 2459

fix comments

9 lines of code changed in 1 file:

sbu062 2017-01-24 04:33 Rev.: 2458

reduced ENERGY_INIT and ENERGY_GERROR_CV to reduce variability of body mass at birth

2 lines of code changed in 1 file:

sbu062 2017-01-24 04:26 Rev.: 2457

reduced ENERGY_GERROR_CV

1 lines of code changed in 1 file:

sbu062 2017-01-24 04:11 Rev.: 2456

the obsolete body length increment factor body_length_increment is now control_unselected trait for random drift control; fix comments

40 lines of code changed in 1 file:

sbu062 2017-01-24 03:30 Rev.: 2455

LINEAR_GROWTH_HORMONE_INCREMENT_FACTOR_CURVE_ABSCISSA now sets raw abscissa values; implemented (gamma2gene_fake_vals) for guessing gamma2gene output; the growth hormone weighting in (body_len_grow_calculate_increment_step) now uses raw abscissa values that internally go via (gamma2gene) fake calc function

77 lines of code changed in 1 file:

sbu062 2017-01-23 18:37 Rev.: 2454

initial implementation of interpolation-based growth hormone effect on linear growth in (body_len_grow_calculate_increment_step)

55 lines of code changed in 1 file:

sbu062 2017-01-23 17:33 Rev.: 2453

reimplementing body length grow, first do simplistic mass-proportional growth in (body_len_grow_calculate_increment_step), debug code

43 lines of code changed in 1 file:

sbu062 2017-01-23 16:19 Rev.: 2452

fix comments

3 lines of code changed in 1 file:

sbu062 2017-01-23 16:17 Rev.: 2451

reimplemented the cost of consuming food item, now using cost_factor_food_smr and cost_swimming, deleted obsolete constants FOOD_ITEM_CAPTURE_PROP_COST and FOOD_ITEM_CAPTURE_MINIMUM_COST

29 lines of code changed in 1 file:

sbu062 2017-01-23 15:35 Rev.: 2450

smr food processing cost (body_mass_food_processing_cost_factor_smr)

15 lines of code changed in 1 file:

sbu062 2017-01-23 15:17 Rev.: 2449

reduced MASS_GROWTH_THRESHOLD, added more agent's data for output

11 lines of code changed in 1 file:

jwe041 2017-01-23 14:27 Rev.: 2448

MATLAB code (figures from forward simualtion and strategy matrix)

0 lines of code changed in 2 files:

sbu062 2017-01-23 12:36 Rev.: 2447

update initial birth mass and length in history at init, added more agent output data in evolution, debug output code

22 lines of code changed in 1 file:

cje012 2017-01-23 11:45 Rev.: 2446

Added folder path from file to module

10 lines of code changed in 1 file:

cje012 2017-01-23 10:33 Rev.: 2445

Included folderpath in print module

14 lines of code changed in 1 file:

sbu062 2017-01-23 10:12 Rev.: 2444

added history stacks for body length and mass

29 lines of code changed in 1 file:

jwe041 2017-01-23 10:05 Rev.: 2443

Changed rutines for writing to file

6 lines of code changed in 1 file:

cje012 2017-01-23 10:04 Rev.: 2442

Added trim

13 lines of code changed in 1 file:

cje012 2017-01-23 09:43 Rev.: 2441

Added priting module to the file

60 lines of code changed in 1 file:

cje012 2017-01-23 09:35 Rev.: 2440

Added svn tagto file

2 lines of code changed in 1 file:

cje012 2017-01-23 09:33 Rev.: 2439

Adding binary_write module to trunk.

82 lines of code changed in 1 file:

cje012 2017-01-23 09:31 Rev.: 2438

Merged the two testbranches into the trunk.

228 lines of code changed in 1 file:

nzlcj 2017-01-23 08:37 Rev.: 2437

Looked at code together, changed some typos but no substantial changes.

3 lines of code changed in 1 file:

sbu062 2017-01-22 18:57 Rev.: 2436

fix comments

23 lines of code changed in 1 file:

sbu062 2017-01-21 14:28 Rev.: 2435

deleted obsolete debug code, fixed timers and labels

37 lines of code changed in 1 file:

sbu062 2017-01-21 13:06 Rev.: 2434

debug code

9 lines of code changed in 1 file:

sbu062 2017-01-20 22:06 Rev.: 2433

changelog update

32 lines of code changed in 1 file:

sbu062 2017-01-20 20:40 Rev.: 2432

increased food item size variability FOOD_ITEM_SIZE_DEFAULT_CV, debug code save all agents generation 1

28 lines of code changed in 1 file:

sbu062 2017-01-20 16:44 Rev.: 2431

fixed missing 'eat%init' in (behaviour_do_eat_food_item) that caused NaN's in body mass, stomach content at init cannot exceed maxstomcap, reduced initialised stomach content as agents were losing weight from start, debug code

27 lines of code changed in 1 file:

sbu062 2017-01-20 14:39 Rev.: 2430

implemented (energy_update) in CONDITION, update the max mass in (body_mass_grow_do_calculate), and update body length and energy in (eat_food_item_do_execute)

31 lines of code changed in 1 file:

nzlcj 2017-01-20 14:16 Rev.: 2429

Coded together - fixed bugs, correctes some small things in forward part, added text file for folder name for writing.

39 lines of code changed in 1 file:

sbu062 2017-01-20 13:43 Rev.: 2428

added perception_override_energy parameter in food item gos expectancy

54 lines of code changed in 1 file:

nzlcj 2017-01-20 08:30 Rev.: 2427

Looked for bugs together, corrected some small bugs.

5 lines of code changed in 1 file:

glj042 2017-01-20 07:53 Rev.: 2426

Gabbi

7 lines of code changed in 1 file:

sbu062 2017-01-19 19:21 Rev.: 2425

implemented (state_motivation_attention_weights_transfer) still not used in (behaviour_root_attention_weights_transfer)

56 lines of code changed in 1 file:

glj042 2017-01-19 14:04 Rev.: 2424

Gabbi

37 lines of code changed in 1 file:

sbu062 2017-01-19 13:17 Rev.: 2423

minor fix comments

5 lines of code changed in 1 file:

sbu062 2017-01-19 13:13 Rev.: 2422

accessor function (individ_label) for individual agent text label, use it in debug interpolation plots file names

21 lines of code changed in 1 file:

nzlcj 2017-01-19 12:39 Rev.: 2421

Coded together. Checked forward routine and made some small changes.

23 lines of code changed in 1 file:

sbu062 2017-01-19 12:34 Rev.: 2420

minor comment fix

3 lines of code changed in 1 file:

glj042 2017-01-19 11:43 Rev.: 2419

Forward part by Gabbi

224 lines of code changed in 1 file:

sbu062 2017-01-19 05:28 Rev.: 2418

implementation notes on (behaviour_root_attention_weights_transfer)

22 lines of code changed in 1 file:

sbu062 2017-01-19 04:54 Rev.: 2417

implemented (attention_transfer) subroutine to copy attention weights from actor agent to BEHAVIOUR_BASE; added global Generation_Number_Current, unused so far

96 lines of code changed in 1 file:

sbu062 2017-01-18 16:44 Rev.: 2416

update changelog

18 lines of code changed in 1 file:

sbu062 2017-01-18 15:49 Rev.: 2415

fix comments only

8 lines of code changed in 1 file:

sbu062 2017-01-18 15:46 Rev.: 2414

in (gos_attention_modulate_weights) modulate 'ATTENTION_WEIGHT_xxx' parameters rather than init all with just 'all_vals_fix'

186 lines of code changed in 1 file:

sbu062 2017-01-18 13:35 Rev.: 2413

implemented attention modulation by the current gos: (attention_modulate), this is called from within (gos_find)

164 lines of code changed in 1 file:

nzlcj 2017-01-18 10:45 Rev.: 2412

Coded together. Addded pre-spawning waiting at spawning grounds. Only in backwards, to update forwards simulation is Gabbi's homework.

53 lines of code changed in 1 file:

glj042 2017-01-17 12:57 Rev.: 2411

Last version Gabbi

114 lines of code changed in 1 file:

sbu062 2017-01-16 15:27 Rev.: 2410

minor reformat of (gos_find_global_state), got rid of obsolete continued lines in GOS_IS_MAX 'if' within 'associate'

13 lines of code changed in 1 file:

sbu062 2017-01-16 15:18 Rev.: 2409

minor reformat code

3 lines of code changed in 1 file:

sbu062 2017-01-15 20:12 Rev.: 2408

update changelog

4 lines of code changed in 1 file:

sbu062 2017-01-14 19:15 Rev.: 2407

implemented forgotten population size for the POPULATION class, its destructor and accessor functions, array of individuals now allocatable

72 lines of code changed in 1 file:

sbu062 2017-01-14 12:34 Rev.: 2406

updated chengelog

30 lines of code changed in 1 file:

sbu062 2017-01-14 12:13 Rev.: 2405

now using (visual_range_fast) as the default (visual_range) frontend

12 lines of code changed in 1 file:

sbu062 2017-01-14 11:06 Rev.: 2404

minor fix comments

2 lines of code changed in 1 file:

sbu062 2017-01-14 11:03 Rev.: 2403

now using scalar prey_contrast parameter instead of vector based prey_contrast_vector in (consp_perception_get_visrange_objects) and (predator_perception_get_visrange_objects)

2 lines of code changed in 1 file:

sbu062 2017-01-14 10:54 Rev.: 2402

fixed (visual_range) frontend to be universal, easy to switch to (visual_range_fast) now, still use vector based prey_contrast in the main code

34 lines of code changed in 1 file:

sbu062 2017-01-13 21:44 Rev.: 2401

additional warning on prey_contrast parameter in vector-based call to new elemental/pure (visual_range_fast) backend

11 lines of code changed in 1 file:

sbu062 2017-01-13 21:35 Rev.: 2400

added (visual_range...) interface calling the elemental computational backend (visual_range_fast) plus added warning on prey_contrast parameter in vector-based call

27 lines of code changed in 1 file:

sbu062 2017-01-13 20:57 Rev.: 2399

logger parameters output

16 lines of code changed in 1 file:

sbu062 2017-01-13 13:24 Rev.: 2398

delete tmp files at neat

1 lines of code changed in 1 file:

sbu062 2017-01-13 13:14 Rev.: 2397

added gf flag -Warray-temporaries to warn on creation of tmp arrays

2 lines of code changed in 1 file:

sbu062 2017-01-13 12:40 Rev.: 2396

implemented fast elemental function (visual_range_fast) frontend, redeclared visual range backend as elemental.

104 lines of code changed in 1 file:

sbu062 2017-01-13 12:02 Rev.: 2395

fix comments

5 lines of code changed in 1 file:

sbu062 2017-01-13 11:57 Rev.: 2394

whole-array calculation procedure using the renewed elemental parallel-safe backend, the old loop-based remained there so far

84 lines of code changed in 1 file:

sbu062 2017-01-13 11:33 Rev.: 2393

updated the new parallel-ready visual range calculation backend

46 lines of code changed in 1 file:

sbu062 2017-01-12 17:28 Rev.: 2392

update changelog

39 lines of code changed in 1 file:

sbu062 2017-01-12 16:00 Rev.: 2391

added more 'do concurrent' in THE_GENOME

6 lines of code changed in 1 file:

sbu062 2017-01-12 15:40 Rev.: 2390

added concurrent for distance_euclidean in (spatial_moving_self_distance_3d), but disabled so far

6 lines of code changed in 1 file:

sbu062 2017-01-12 14:27 Rev.: 2389

started using parallelised processing, first stage, use 'do concurrent' in COMMONDATA and THE_ENVIRONMENT, in some cases do whole array elemental procedures, seems to work flawlessly in new ifort 17, purified visual range subroutines for parallel-safe processing

80 lines of code changed in 1 file:

sbu062 2017-01-12 11:53 Rev.: 2388

re-declared simple functions to pure, still need to purify complex ones

20 lines of code changed in 1 file:

sbu062 2017-01-11 14:35 Rev.: 2387

only warnings on passed-object dummy argument must always be scalar in non-pure class-bound functions

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sbu062 2017-01-11 14:29 Rev.: 2386

added warning on unavailability of vector-based class-bound visual range function

15 lines of code changed in 1 file:

sbu062 2017-01-11 14:14 Rev.: 2385

now reuse class-bound (illumination) in (food_perception_get_visrange_objects), (consp_perception_get_visrange_objects) and (predator_perception_get_visrange_objects)

9 lines of code changed in 1 file:

sbu062 2017-01-11 13:43 Rev.: 2384

deleted (spatial_calc_irradiance_at_depth_vector) due to: Error: Passed-object dummy argument of 'spatial_calc_irradiance_at_depth_vector' at (1) must be scalar.

0 lines of code changed in 1 file:

sbu062 2017-01-11 13:41 Rev.: 2383

implemented vector-based function version (spatial_calc_irradiance_at_depth_vector)

42 lines of code changed in 1 file:

sbu062 2017-01-11 12:24 Rev.: 2382

the SPATIAL-class bound modular function (illumination) now used in (food_item_visibility_visual_range)

1 lines of code changed in 1 file:

sbu062 2017-01-11 12:20 Rev.: 2381

implemented modular func (spatial_calc_irradiance_at_depth) for illumination for any spatial agent class

32 lines of code changed in 1 file:

sbu062 2017-01-11 12:05 Rev.: 2380

now use (visibility) function for visual range in (food_item_capture_probability_calc)

10 lines of code changed in 1 file:

sbu062 2017-01-11 09:30 Rev.: 2379

implemented single visual range function for food item class (food_item_visibility_visual_range), in previous revision 2376

1 lines of code changed in 1 file:

sbu062 2017-01-10 20:40 Rev.: 2378

fix comments

43 lines of code changed in 1 file:

sbu062 2017-01-10 14:10 Rev.: 2377

changelog updated

20 lines of code changed in 1 file:

sbu062 2017-01-10 13:35 Rev.: 2376

subjective capture probability is now function (subjective_capture_prob) within (behaviour_select_food_item)

35 lines of code changed in 1 file:

sbu062 2017-01-10 13:05 Rev.: 2375

implemented weighting of GOS arousal expectancies by subjective probability of food item capture in (behaviour_select_food_item), so far not separate sub-function

48 lines of code changed in 1 file:

sbu062 2017-01-10 05:00 Rev.: 2374

non-linear interpolation DDPINTERPOL instead of LINTERPOL in (food_item_capture_probability_calc)

3 lines of code changed in 1 file:

sbu062 2017-01-10 04:35 Rev.: 2373

reformat code only

27 lines of code changed in 1 file:

sbu062 2017-01-10 04:22 Rev.: 2372

fixed restricted food capture probability range 0.84 distance_here in (food_item_capture_probability_calc), added debug code

24 lines of code changed in 1 file:

sbu062 2017-01-09 13:55 Rev.: 2371

compiler_version() and compiler_options() functions are not supported by Intel Fortran 2017

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sbu062 2017-01-05 19:45 Rev.: 2370

changelog updated

8 lines of code changed in 1 file:

sbu062 2017-01-05 19:42 Rev.: 2369

debug code, fix gos motivation in subjective selection by providing explicit sufficiently high rescale_max_motivation=10.0 parameter provided to (food_item_select)

1 lines of code changed in 1 file:

sbu062 2017-01-04 21:39 Rev.: 2368

changelog updated

33 lines of code changed in 1 file:

sbu062 2017-01-04 20:07 Rev.: 2367

fixed zero attention weights and zero final expectancies in food item predictive selection among those in the perception object: (behaviour_select_food_item) added init

9 lines of code changed in 1 file:

sbu062 2017-01-04 12:06 Rev.: 2366

fixed (perception_components_neuronal_response_calculate), was swapped misplaced init_val in (neuro_resp) call at FOOD_DIR block

6 lines of code changed in 1 file:

sbu062 2017-01-04 10:50 Rev.: 2365

umbrella subroutine for all environmental perceptions(perceptions_environ); choose the first food item if only one perceived in (behaviour_select_food_item) -- cannot non-feed now! in debug code: select food_item_select instead of food_item_select_nearest

35 lines of code changed in 1 file:

sbu062 2017-01-04 09:17 Rev.: 2364

abbreviated lowercase keywoords in (LOG_DBG) avoid distraction, more debug logging

11 lines of code changed in 1 file:

sbu062 2017-01-03 18:56 Rev.: 2363

added hard minimum for body mass parameter BODY_MASS_MIN, death below that in (body_mass_is_starvation_check), more logging

44 lines of code changed in 1 file:

sbu062 2017-01-03 17:07 Rev.: 2362

fix birth mass in (starved_death), check starvation death in debug code, more logging

31 lines of code changed in 1 file:

sbu062 2017-01-03 16:00 Rev.: 2361

disabled GOS threshold interpolation plots: too many

13 lines of code changed in 1 file:

sbu062 2017-01-03 13:41 Rev.: 2360

save foods after INDS loop, check eaten status

29 lines of code changed in 1 file:

sbu062 2017-01-03 13:20 Rev.: 2359

debug code: save motion history of agents

12 lines of code changed in 1 file:

sbu062 2017-01-03 13:06 Rev.: 2358

fix last GOS thtreshold interpolation parameter MOTIVATION_COMPET_THRESHOLD_CURVE_ABSCISSA; log GOS label in debug code output

2 lines of code changed in 1 file:

sbu062 2017-01-03 12:19 Rev.: 2357

minor change added gap in debug plotfile

2 lines of code changed in 1 file:

sbu062 2017-01-02 17:19 Rev.: 2356

changelog updated

12 lines of code changed in 1 file:

sbu062 2017-01-02 17:17 Rev.: 2355

in (gos_find_global_state) fixed gos arousal always stuck with zero when low arousal, AROUSAL_THRESHOLD

2 lines of code changed in 1 file:

sbu062 2017-01-02 16:24 Rev.: 2354

debug code: reduced environment to make finding food more easy; added timestamp and random string in arousal gos threshold interpolation output plot

8 lines of code changed in 1 file:

sbu062 2017-01-02 11:45 Rev.: 2353

debug code: gos_find, gos outputs

3 lines of code changed in 1 file:

sbu062 2017-01-02 11:28 Rev.: 2352

debug code: motivations_primary_calc, modulation, motivations_to_memory

8 lines of code changed in 1 file:

December 2016 »

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