August 2016 Commit Log

Number of Commits:
114
Number of Active Developers:
2
sbu062 2016-08-31 17:05 Rev.: 1315

function to check if food item eaten & unavailable

19 lines of code changed in 1 file:

sbu062 2016-08-31 15:02 Rev.: 1314

more parameters for food resource constructor

21 lines of code changed in 1 file:

glj042 2016-08-31 14:52 Rev.: 1313

No changes Gabbi

49 lines of code changed in 1 file:

sbu062 2016-08-31 14:33 Rev.: 1312

skeleton for food resource constructor subroutine

14 lines of code changed in 1 file:

sbu062 2016-08-31 14:24 Rev.: 1311

skeleton constructor for food resource object

10 lines of code changed in 1 file:

sbu062 2016-08-31 14:16 Rev.: 1310

deleted distance function from spatial moving object, it is identical to spatial container and cannot accept spatial_moving parameter for overloading

1 lines of code changed in 1 file:

sbu062 2016-08-31 13:57 Rev.: 1309

constructor for food item container type

25 lines of code changed in 1 file:

sbu062 2016-08-31 13:46 Rev.: 1308

added constructor functions for spatial container object that accept spatial argument rather than arrays or scalars, they are now locate method (position is scalar)

55 lines of code changed in 1 file:

sbu062 2016-08-31 13:16 Rev.: 1307

skeleton functions for food item container

70 lines of code changed in 1 file:

sbu062 2016-08-31 12:22 Rev.: 1306

fix error_flag initialisation in visual_range scalar

4 lines of code changed in 1 file:

sbu062 2016-08-31 11:30 Rev.: 1305

minor fix comments

3 lines of code changed in 1 file:

sbu062 2016-08-31 11:24 Rev.: 1304

minor fix

15 lines of code changed in 1 file:

sbu062 2016-08-31 11:13 Rev.: 1303

added generic array interface for SPATIAL object current coordinates

31 lines of code changed in 1 file:

glj042 2016-08-30 13:15 Rev.: 1302

Same as before

21 lines of code changed in 1 file:

sbu062 2016-08-30 11:45 Rev.: 1301

funcs to get individual 3d coordinates of a spatial object

43 lines of code changed in 1 file:

sbu062 2016-08-30 11:16 Rev.: 1300

spatial moving objects now keep history stack in array of spatial objects rather than simple real arrays

51 lines of code changed in 1 file:

sbu062 2016-08-30 06:31 Rev.: 1299

micro fix

4 lines of code changed in 1 file:

sbu062 2016-08-29 20:37 Rev.: 1298

minor fixes

46 lines of code changed in 1 file:

sbu062 2016-08-29 18:51 Rev.: 1297

minor fix comments

5 lines of code changed in 1 file:

sbu062 2016-08-29 18:24 Rev.: 1296

now use type-bound function rather than constructor for build environment object

10 lines of code changed in 1 file:

sbu062 2016-08-29 17:55 Rev.: 1295

generic interface build for environment build from vector of coordinates or raw object SPATIAL

2 lines of code changed in 1 file:

sbu062 2016-08-29 17:52 Rev.: 1294

converted the environment objects procs and habitat subobject to use the spatial container for 3D coordinates by default

38 lines of code changed in 1 file:

sbu062 2016-08-29 17:23 Rev.: 1293

moved environment below spatial + proc to start new history for movable spatial objects

33 lines of code changed in 1 file:

sbu062 2016-08-29 14:37 Rev.: 1292

more funcs for habitat, centre for random walk go back

18 lines of code changed in 1 file:

sbu062 2016-08-29 14:07 Rev.: 1291

whole environment container

88 lines of code changed in 1 file:

sbu062 2016-08-29 12:31 Rev.: 1290

micro fix

2 lines of code changed in 1 file:

sbu062 2016-08-29 11:58 Rev.: 1289

fix moving object, distance from any step in history stack now

48 lines of code changed in 1 file:

sbu062 2016-08-29 08:53 Rev.: 1288

added spatial history arrays and history stack functions

79 lines of code changed in 1 file:

sbu062 2016-08-26 15:51 Rev.: 1287

added a few other types for habitat + spatial objects

196 lines of code changed in 1 file:

sbu062 2016-08-26 12:23 Rev.: 1286

add to higher level habitat super-type

9 lines of code changed in 1 file:

sbu062 2016-08-26 12:17 Rev.: 1285

initial implementation of higher level habitat super-type

6 lines of code changed in 1 file:

sbu062 2016-08-26 12:02 Rev.: 1284

growth hormone added, linear growth directly affected by growhorm

117 lines of code changed in 1 file:

sbu062 2016-08-26 09:24 Rev.: 1283

minor fix

2 lines of code changed in 1 file:

sbu062 2016-08-24 14:23 Rev.: 1282

small fix

2 lines of code changed in 1 file:

sbu062 2016-08-24 13:29 Rev.: 1281

fixed tip on string dummy parameters

12 lines of code changed in 1 file:

sbu062 2016-08-24 13:19 Rev.: 1280

changed all dummy string parameters in subroutines to assumed length from fixed, this won't taint compilers

7 lines of code changed in 1 file:

sbu062 2016-08-24 13:18 Rev.: 1279

added tip on string dummy parameters, aleways use assumed length , asterisk

37 lines of code changed in 1 file:

sbu062 2016-08-24 12:46 Rev.: 1278

solved finally timer label issue on ifort, changed to assumed length asterisk string in function parameter, no warnings or errors are now issued

3 lines of code changed in 1 file:

sbu062 2016-08-24 12:26 Rev.: 1277

added warning on timer start implementation, string length mismatch + reduced reshape components in GA... that tainted ifort

36 lines of code changed in 1 file:

sbu062 2016-08-24 10:59 Rev.: 1276

minor refactor light at surface deterministic func

3 lines of code changed in 1 file:

sbu062 2016-08-24 10:34 Rev.: 1275

fix athomic func example code

1 lines of code changed in 1 file:

sbu062 2016-08-24 10:32 Rev.: 1274

added athomic func example code

20 lines of code changed in 1 file:

sbu062 2016-08-24 10:31 Rev.: 1273

added calculated PI constant, exact in any supported SRP precision

5 lines of code changed in 1 file:

sbu062 2016-08-24 09:51 Rev.: 1272

visual range wrapper, vector version is now ready

50 lines of code changed in 1 file:

sbu062 2016-08-24 09:18 Rev.: 1271

predator visual range scalar wrapper function ready

63 lines of code changed in 1 file:

sbu062 2016-08-23 11:45 Rev.: 1270

minor fix format comments

12 lines of code changed in 1 file:

sbu062 2016-08-23 11:34 Rev.: 1269

light decay at depth functions + generic interface implemented

95 lines of code changed in 1 file:

sbu062 2016-08-22 19:56 Rev.: 1268

fix surlig, small, comments for doxygen

5 lines of code changed in 1 file:

sbu062 2016-08-22 18:38 Rev.: 1267

surface light surlig, vector function + universal genetric interface

65 lines of code changed in 1 file:

sbu062 2016-08-22 16:33 Rev.: 1266

stochastic Gaussian surlig

59 lines of code changed in 1 file:

sbu062 2016-08-22 12:22 Rev.: 1265

found & pasted environmental parameters, + light intensity surlig func, initial implementation non-stochastic

76 lines of code changed in 1 file:

sbu062 2016-08-22 07:43 Rev.: 1264

moved the environment upwards as it's used in neurobio and other down modules, added SRP to Dag's visual range funcs

181 lines of code changed in 1 file:

sbu062 2016-08-20 08:54 Rev.: 1263

added to code formatting rules

47 lines of code changed in 1 file:

sbu062 2016-08-19 14:07 Rev.: 1262

minor fix, no go to visual range sets

8 lines of code changed in 1 file:

sbu062 2016-08-19 13:57 Rev.: 1261

minor fix

5 lines of code changed in 1 file:

sbu062 2016-08-19 13:48 Rev.: 1260

stomach content control procs, plus added Dag's visual range procs

229 lines of code changed in 1 file:

sbu062 2016-08-19 09:20 Rev.: 1259

gene2gamma for reverse func

8 lines of code changed in 1 file:

sbu062 2016-08-17 15:07 Rev.: 1258

minor, comment on overestimation of R in reverse function gene2gamma

4 lines of code changed in 1 file:

sbu062 2016-08-17 14:08 Rev.: 1257

minor updates

5 lines of code changed in 1 file:

sbu062 2016-08-17 10:17 Rev.: 1256

updated comments

2 lines of code changed in 1 file:

sbu062 2016-08-17 10:11 Rev.: 1255

title for timer, need them if many timers used

33 lines of code changed in 1 file:

sbu062 2016-08-17 09:23 Rev.: 1254

remove outdated todos, small reorganise code

38 lines of code changed in 1 file:

sbu062 2016-08-16 12:39 Rev.: 1253

placed timer_cpu from commondata as a good and trivial example of OO implementation

92 lines of code changed in 1 file:

sbu062 2016-08-16 12:16 Rev.: 1252

more notes on timer class + implemented additional timers for the GA evolution procedure

22 lines of code changed in 1 file:

sbu062 2016-08-16 11:57 Rev.: 1251

more fix comments on timer class

4 lines of code changed in 1 file:

sbu062 2016-08-16 11:51 Rev.: 1250

fix comments on timer class

3 lines of code changed in 1 file:

sbu062 2016-08-16 11:45 Rev.: 1249

implemented universal stopwatch object in COMMONDATA for timing, we need it many times

59 lines of code changed in 1 file:

sbu062 2016-08-16 10:49 Rev.: 1248

minor edits

5 lines of code changed in 1 file:

sbu062 2016-08-16 10:36 Rev.: 1247

minor updates

6 lines of code changed in 2 files:

sbu062 2016-08-16 03:49 Rev.: 1246

minor fix

6 lines of code changed in 1 file:

sbu062 2016-08-16 03:44 Rev.: 1245

stomach content mass -- Gaussian

24 lines of code changed in 1 file:

sbu062 2016-08-16 03:08 Rev.: 1244

literal parameters in code now with _SRP precision identifier. + stomach contents
--

25 lines of code changed in 1 file:

sbu062 2016-08-15 07:16 Rev.: 1243

updated latest from branch -- merge doc

20 lines of code changed in 1 file:

sbu062 2016-08-15 07:06 Rev.: 1242

doc on merge usage

17 lines of code changed in 1 file:

sbu062 2016-08-13 11:59 Rev.: 1241

minor corrected

3 lines of code changed in 1 file:

sbu062 2016-08-13 11:52 Rev.: 1239

merged latest doc changes on random

34 lines of code changed in 1 file:

sbu062 2016-08-13 11:49 Rev.: 1238

updated implementation notes on RANDOM

34 lines of code changed in 1 file:

sbu062 2016-08-13 06:11 Rev.: 1237

constants fitted for SRP precision, kind 8 is negligibly slower

39 lines of code changed in 1 file:

sbu062 2016-08-12 18:33 Rev.: 1236

integrated latest changes -- RANDOM with 64 bit reals -- from branch

616 lines of code changed in 2 files:

sbu062 2016-08-12 17:10 Rev.: 1235

real type is now arbitrary precision, use real(SRP) definitions from now on, not sure if double vs single precision really differ much in speed, tests did not sho much differences in gamma precision though

113 lines of code changed in 2 files:

sbu062 2016-08-12 16:49 Rev.: 1234

formatting holes in code removed

0 lines of code changed in 1 file:

sbu062 2016-08-12 16:46 Rev.: 1233

updated doc - random 64 bit procs

14 lines of code changed in 1 file:

sbu062 2016-08-12 15:01 Rev.: 1232

RNORM - renormalised - 64 bit array funcs ready

220 lines of code changed in 1 file:

sbu062 2016-08-12 14:50 Rev.: 1231

RNORM 64 bit array funcs ready

198 lines of code changed in 1 file:

sbu062 2016-08-12 14:40 Rev.: 1230

RAND 64 bit array funcs ready

190 lines of code changed in 1 file:

sbu062 2016-08-12 14:32 Rev.: 1229

started implementing R8 64 bit random funcs

108 lines of code changed in 1 file:

sbu062 2016-08-11 18:13 Rev.: 1228

merged latest from budaev

0 lines of code changed in 4 files:

sbu062 2016-08-11 18:09 Rev.: 1227

Added precision control for real type, probably we need to specify kind everywhere

19 lines of code changed in 1 file:

sbu062 2016-08-11 14:44 Rev.: 1226

Minor comment on underestimation of reverse function after extensive testing

2 lines of code changed in 1 file:

sbu062 2016-08-11 14:38 Rev.: 1225

updated figs with genome architecture, shadow unised chromosomes in GxP matrix

69 lines of code changed in 2 files:

sbu062 2016-08-11 14:25 Rev.: 1224

forgot to treat optional argument

11 lines of code changed in 1 file:

sbu062 2016-08-11 14:13 Rev.: 1223

minor: added comment with maxima function for gamma2gene for quick calc

2 lines of code changed in 1 file:

sbu062 2016-08-11 13:53 Rev.: 1222

addad comment warning on precision deterioration at low values to reverse gamma

3 lines of code changed in 1 file:

sbu062 2016-08-11 12:57 Rev.: 1221

added note on low values

4 lines of code changed in 1 file:

sbu062 2016-08-11 12:53 Rev.: 1220

implemented reverse calc function for gamma2gene, given neural response get signal

29 lines of code changed in 1 file:

sbu062 2016-08-11 07:48 Rev.: 1219

maintenance - trunk

20876 lines of code changed in 87 files:

sbu062 2016-08-11 07:40 Rev.: 1218

maintenance

0 lines of code changed in 87 files:

sbu062 2016-08-11 07:31 Rev.: 1217

maintenance: resolve in trunk

20876 lines of code changed in 87 files:

sbu062 2016-08-11 07:30 Rev.: 1216

maintenance: resolving tree confl

0 lines of code changed in 87 files:

sbu062 2016-08-11 06:31 Rev.: 1215

update modules scheme - swapped modules hormones-body

62 lines of code changed in 2 files:

sbu062 2016-08-11 06:26 Rev.: 1214

updated individual class diagram, moved the body behind hormones

6 lines of code changed in 2 files:

sbu062 2016-08-10 13:28 Rev.: 1213

forgot to check signal above positive zero in gamma2gene variant functions, done

2 lines of code changed in 1 file:

sbu062 2016-08-10 12:28 Rev.: 1212

minor change, delete synthing hidden outdated

1 lines of code changed in 1 file:

sbu062 2016-08-10 06:40 Rev.: 1211

minor, wxmaxima code for plot in comments only

1 lines of code changed in 1 file:

sbu062 2016-08-10 06:37 Rev.: 1210

added smr and thyroid scaling effects on linear growth increment

12 lines of code changed in 1 file:

sbu062 2016-08-10 06:21 Rev.: 1209

changed states to lowercase for easy highlighting

1 lines of code changed in 1 file:

sbu062 2016-08-10 06:06 Rev.: 1208

added thyroid in csv output

3 lines of code changed in 1 file:

sbu062 2016-08-10 06:01 Rev.: 1207

Reordered parameters in commondata accordingly (updated class hierarchy)

133 lines of code changed in 1 file:

sbu062 2016-08-10 05:53 Rev.: 1206

moved the hormones prior to the body in class hierarchy

235 lines of code changed in 1 file:

sbu062 2016-08-10 05:37 Rev.: 1205

fix comments only

9 lines of code changed in 1 file:

sbu062 2016-08-10 05:14 Rev.: 1204

minor change - forgot on keep alive branch after reintegrate

20 lines of code changed in 1 file:

sbu062 2016-08-08 12:39 Rev.: 1203

minor change

2 lines of code changed in 1 file:

sbu062 2016-08-08 12:30 Rev.: 1202

minor updates after vacations

14 lines of code changed in 3 files:

sbu062 2016-08-08 11:22 Rev.: 1201

updated figure in doc, overview of modules

57 lines of code changed in 2 files:

July 2016 »

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