May 2017 Commit Log

Number of Commits:
375
Number of Active Developers:
5
sbu062 2017-05-31 14:59 Rev.: 3840

small fix doxy doc

2 lines of code changed in 1 file:

sbu062 2017-05-31 14:52 Rev.: 3839

fully implemented (do_this) method for ESCAPE_DART: now use the (visibility) method for SPATIALOBJ_PERCEPT_COMP

15 lines of code changed in 1 file:

sbu062 2017-05-31 14:52 Rev.: 3838

implemented (visibility) method for spatialobj_percept_comp class: (spatialobj_percept_visibility_visual_range)

77 lines of code changed in 1 file:

sbu062 2017-05-31 14:52 Rev.: 3837

more code for escape dart (do_this) method: done predation risk calcs

18 lines of code changed in 1 file:

sbu062 2017-05-31 14:52 Rev.: 3836

more code for escape dart (do_this) method: done escape distance calculation

33 lines of code changed in 1 file:

sbu062 2017-05-31 14:51 Rev.: 3835

more code for escape dart (do_this) method: done visibility range calculation block

41 lines of code changed in 1 file:

sbu062 2017-05-31 14:51 Rev.: 3834

implemented (visibility) method for predator object; more code for escape dart (do_this) method

102 lines of code changed in 1 file:

sbu062 2017-05-31 14:51 Rev.: 3833

initial skeleton for (escape_dart_do_this)

89 lines of code changed in 1 file:

sbu062 2017-05-31 14:51 Rev.: 3832

small fix

3 lines of code changed in 1 file:

sbu062 2017-05-31 10:28 Rev.: 3831

added public interface for (execute) for FREEZING

4 lines of code changed in 1 file:

sbu062 2017-05-31 10:24 Rev.: 3830

small fix formatting log

2 lines of code changed in 1 file:

sbu062 2017-05-31 10:21 Rev.: 3829

implemented (execute) method for freezing

46 lines of code changed in 1 file:

sbu062 2017-05-31 09:16 Rev.: 3828

simplified doxy comments in certain (expectancies_calculate)

4 lines of code changed in 1 file:

sbu062 2017-05-31 09:08 Rev.: 3827

reformat freezing class code, add doxygen short info in class procedure interfaces

7 lines of code changed in 1 file:

sbu062 2017-05-31 09:08 Rev.: 3826

in (freeze_motivations_expect) dismantle block construct

23 lines of code changed in 1 file:

sbu062 2017-05-31 08:31 Rev.: 3825

deleted headurl

0 lines of code changed in 1 file:

sbu062 2017-05-30 22:02 Rev.: 3824

done primary and final motivations in (freeze_motivations_expect): (expectancies_calculate) is fully implemented for freezing behaviour

31 lines of code changed in 1 file:

sbu062 2017-05-30 21:27 Rev.: 3823

dleted manual version info from link to graphics tools

1 lines of code changed in 1 file:

sbu062 2017-05-30 21:23 Rev.: 3822

dleted obsolete file

0 lines of code changed in 1 file:

sbu062 2017-05-30 19:16 Rev.: 3821

added filesystem tree and additional configs

22 lines of code changed in 1 file:

sbu062 2017-05-30 18:43 Rev.: 3820

added configuration options for init

11 lines of code changed in 1 file:

sbu062 2017-05-30 18:16 Rev.: 3819

added nginx config

80 lines of code changed in 1 file:

sbu062 2017-05-30 18:10 Rev.: 3818

added initial debian server install script

21 lines of code changed in 1 file:

sbu062 2017-05-30 17:56 Rev.: 3817

fixed echo

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:55 Rev.: 3816

fixed copying

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:52 Rev.: 3815

made executable

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:50 Rev.: 3814

added executable properties

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:48 Rev.: 3813

added index page generation script

37 lines of code changed in 1 file:

sbu062 2017-05-30 17:36 Rev.: 3812

updated HEDTOOLS plot tools download link latest version

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:31 Rev.: 3811

updated HEDTOOLS download link latest version

1 lines of code changed in 1 file:

sbu062 2017-05-30 17:06 Rev.: 3810

added statsvn for easy deployment

0 lines of code changed in 1 file:

sbu062 2017-05-30 15:54 Rev.: 3809

made ZERO the base point for perception overrides, not 0.0.

9 lines of code changed in 1 file:

sbu062 2017-05-30 15:53

refactor expectancies in (go_down_motivations_expect): decrement cost of living from mass and digestion

31 lines of code changed in 2 files:

sbu062 2017-05-30 15:52 Rev.: 3806

refactor expectancies in (reproduce_motivations_expect): decrement cost of living from mass

5 lines of code changed in 1 file:

sbu062 2017-05-30 13:05 Rev.: 3805

refactor expectancies in (eat_food_item_motivations_expect): decrement digestion from stomach contents; decrement cost of living from mass

16 lines of code changed in 1 file:

sbu062 2017-05-30 13:05 Rev.: 3804

continue implementing (freeze_motivations_expect), done stage 3: Calculate motivation expectancies. WARN: include living cost and digestion subtractions into expectancy calculations

224 lines of code changed in 1 file:

sbu062 2017-05-30 12:03 Rev.: 3803

added (stomach_emptify_backend); call it now in (stomach_content_mass_emptify_step); small additions to (freeze_motivations_expect)

86 lines of code changed in 1 file:

sbu062 2017-05-30 12:03 Rev.: 3802

added skeleton (freeze_motivations_expect)

22 lines of code changed in 1 file:

tla051 2017-05-30 11:01

daily average included

35 lines of code changed in 2 files:

sbu062 2017-05-30 09:33 Rev.: 3799

updated crossover schemes, svg's also rescaled to 600px

2863 lines of code changed in 4 files:

sbu062 2017-05-30 09:22 Rev.: 3798

updated new schemes in code, svg's rescaled to 600px

1968 lines of code changed in 3 files:

sbu062 2017-05-30 09:21 Rev.: 3797

schemes redone with explicit homologues, old removed

3886 lines of code changed in 9 files:

tla051 2017-05-30 09:19 Rev.: 3796

lims inclusion changed

6 lines of code changed in 1 file:

tla051 2017-05-30 09:18 Rev.: 3795

plots refined

67 lines of code changed in 1 file:

sbu062 2017-05-30 08:59 Rev.: 3794

refactor fully random recombination (recombine_random), added partially random recombination backend (recombine_partial)

146 lines of code changed in 1 file:

sbu062 2017-05-29 17:30 Rev.: 3793

fix size 600 px

11 lines of code changed in 1 file:

sbu062 2017-05-29 17:16 Rev.: 3792

fixed plot for fixed genetic crossover

1906 lines of code changed in 3 files:

sbu062 2017-05-29 17:16 Rev.: 3791

inserted plot for fixed genetic crossover into doxygen

3 lines of code changed in 1 file:

sbu062 2017-05-29 17:15 Rev.: 3790

added plot for fixed genetic crossover

2708 lines of code changed in 3 files:

sbu062 2017-05-29 15:49 Rev.: 3789

fix note

1 lines of code changed in 1 file:

sbu062 2017-05-29 15:45 Rev.: 3788

small formatting

1 lines of code changed in 1 file:

sbu062 2017-05-29 15:41 Rev.: 3787

inserted recombination scheme into code, svn chart reduced to 500 px width

674 lines of code changed in 2 files:

sbu062 2017-05-29 15:37 Rev.: 3786

added recombination scheme doxy plot

247 lines of code changed in 3 files:

sbu062 2017-05-29 15:03 Rev.: 3785

procedure (genome_individual_crossover_homol_rand_alleles) is now parallel, based on nested 'do concurrent' loops

4 lines of code changed in 1 file:

sbu062 2017-05-29 15:03

formatting code in (genome_individual_crossover_homol_rand_alleles)

10 lines of code changed in 2 files:

sbu062 2017-05-29 15:03 Rev.: 3782

initial version of fixed genetic crossover engine (genome_individual_recombine_homol_rand_alleles)

132 lines of code changed in 1 file:

sbu062 2017-05-29 15:03 Rev.: 3781

prepare for fixed genetic crossover procedure, renamed (genome_individual_crossover_homol_rand_alleles) to (genome_individual_recombine_homol_rand_alleles)

57 lines of code changed in 1 file:

sbu062 2017-05-29 15:03 Rev.: 3780

minor changes in in (genome_individual_crossover_homol_rand_alleles)

5 lines of code changed in 1 file:

sbu062 2017-05-29 13:43 Rev.: 3779

fixed doxygen docs in (genome_individual_crossover_homol_rand_alleles)

21 lines of code changed in 1 file:

sbu062 2017-05-29 13:42 Rev.: 3778

fixed subtitles in (genome_individual_crossover_homol_rand_alleles)

18 lines of code changed in 1 file:

sbu062 2017-05-29 13:23 Rev.: 3777

continue implementing skeleton genetic crossover engine, (genome_individual_crossover_homol_rand_alleles) fully implemented

10 lines of code changed in 1 file:

sbu062 2017-05-29 13:22 Rev.: 3776

continue implementing skeleton genetic crossover engine, cleanup code (genome_individual_crossover_homol_rand_alleles)

45 lines of code changed in 1 file:

sbu062 2017-05-29 13:22 Rev.: 3775

continue implementing skeleton genetic crossover engine, (genome_individual_crossover_homol_rand_alleles)

75 lines of code changed in 1 file:

cje012 2017-05-29 12:03 Rev.: 3774

Changes to plots due to changes in model.

11 lines of code changed in 1 file:

cje012 2017-05-29 12:02 Rev.: 3773

Added a new variable end_status to forward that records if the individual reaches max length, dies or runs out of time.

18 lines of code changed in 1 file:

sbu062 2017-05-29 11:07 Rev.: 3772

cleanup (visual_range) frontend: added subtitle, higher visibility in doxygen

5 lines of code changed in 1 file:

sbu062 2017-05-29 11:03 Rev.: 3771

added link to all implementations of visual_range function superset

30 lines of code changed in 1 file:

sbu062 2017-05-29 10:40 Rev.: 3770

increased visual range sample plots

4267 lines of code changed in 4 files:

sbu062 2017-05-29 10:40 Rev.: 3769

initial skeleton for genetic crossover at INDIVIDUAL_GENOME

11 lines of code changed in 1 file:

tla051 2017-05-29 09:31 Rev.: 3768

customized plotting function

9 lines of code changed in 1 file:

tla051 2017-05-29 09:30 Rev.: 3767

read .bin files (fortran output) into matlab

3 lines of code changed in 1 file:

tla051 2017-05-29 09:30 Rev.: 3766

plot forward simulations

71 lines of code changed in 1 file:

tla051 2017-05-29 09:28 Rev.: 3765

minor bug fixes, include other input variables

3 lines of code changed in 1 file:

tla051 2017-05-29 09:27 Rev.: 3764

minor bug fixes and gut converted from g to j

40 lines of code changed in 1 file:

sbu062 2017-05-29 04:59 Rev.: 3763

continue review and cleanup doxygen: small fix

19 lines of code changed in 1 file:

sbu062 2017-05-28 20:03 Rev.: 3762

continue review and cleanup doxygen: small fix

12 lines of code changed in 1 file:

sbu062 2017-05-27 09:52 Rev.: 3761

continue review and cleanup doxygen: small fix

0 lines of code changed in 1 file:

sbu062 2017-05-27 09:51 Rev.: 3760

continue review and cleanup doxygen: converted docs for named blocks to lists

46 lines of code changed in 1 file:

sbu062 2017-05-27 09:17 Rev.: 3759

continue review and cleanup doxygen: converted docs for named blocks to lists in (predator_capture_risk_calculate_fish)

82 lines of code changed in 1 file:

sbu062 2017-05-27 08:58 Rev.: 3758

continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item); added howto in doxygen doc style

7 lines of code changed in 1 file:

sbu062 2017-05-27 08:42 Rev.: 3757

continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item)

1 lines of code changed in 1 file:

sbu062 2017-05-27 08:35 Rev.: 3756

continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item)

1 lines of code changed in 1 file:

sbu062 2017-05-27 08:29 Rev.: 3755

continue review and cleanup doxygen: descriptions in (behaviour_select_food_item) fixed

44 lines of code changed in 1 file:

sbu062 2017-05-26 13:36 Rev.: 3754

continue review and cleanup doxygen: fixes in visual range frontends

1 lines of code changed in 1 file:

sbu062 2017-05-26 13:31

continue review and cleanup doxygen: fixes in visual range frontends

3 lines of code changed in 2 files:

sbu062 2017-05-26 13:24

continue review and cleanup doxygen: fixes in visual range frontends

6 lines of code changed in 2 files:

sbu062 2017-05-26 13:14

continue review and cleanup doxygen: fixes in visual range frontends

4261 lines of code changed in 4 files:

sbu062 2017-05-26 13:05 Rev.: 3747

continue review and cleanup doxygen: fixes in visual range frontends

1 lines of code changed in 1 file:

sbu062 2017-05-26 12:56

continue review and cleanup doxygen: fixes in visual range frontends

7 lines of code changed in 2 files:

sbu062 2017-05-26 12:37 Rev.: 3744

continue review and cleanup doxygen: fixes in visual range frontends

8 lines of code changed in 1 file:

sbu062 2017-05-26 12:27

continue review and cleanup doxygen: fixes in visual range frontends

25 lines of code changed in 3 files:

sbu062 2017-05-26 12:13 Rev.: 3740

continue review and cleanup doxygen: fixes in visual range frontends

41 lines of code changed in 1 file:

sbu062 2017-05-26 11:16 Rev.: 3739

continue review and cleanup doxygen: fixes in visual range frontends

69 lines of code changed in 1 file:

sbu062 2017-05-26 08:20 Rev.: 3738

moved old hormones v1 branch as subbranch into R, the only valuable thing is calling fortran from R

0 lines of code changed in 6 files:

sbu062 2017-05-26 08:16 Rev.: 3737

delete obsolete copy of camilla's h2

0 lines of code changed in 4 files:

sbu062 2017-05-25 11:37 Rev.: 3736

continue review and cleanup doxygen: small fix

2 lines of code changed in 1 file:

sbu062 2017-05-25 11:36 Rev.: 3735

continue review and cleanup doxygen: small fixes

3 lines of code changed in 1 file:

sbu062 2017-05-25 11:36 Rev.: 3734

updated info on screen output mode

9 lines of code changed in 1 file:

sbu062 2017-05-24 23:18 Rev.: 3733

updated scheme motivation: added direct predation risk component

7397 lines of code changed in 3 files:

sbu062 2017-05-24 23:08 Rev.: 3732

updated scheme appraisal: added direct predation risk component (perceptual components of motivation) that has been added recently (svn r3599)

8333 lines of code changed in 3 files:

sbu062 2017-05-24 22:32 Rev.: 3731

continue review and cleanup doxygen: fix lists

3 lines of code changed in 1 file:

sbu062 2017-05-24 22:27 Rev.: 3730

added a general introductory note on spatial perception routines (see_food), (see_consp) and (see_pred)

29 lines of code changed in 1 file:

sbu062 2017-05-24 22:12 Rev.: 3729

continue review and cleanup doxygen: small reformat formula

6 lines of code changed in 1 file:

sbu062 2017-05-24 21:55 Rev.: 3728

continue review and cleanup doxygen: finally deleted huge sparse non-doxygen comment notes including ifort 13 bug reports in (see_food), (see_consp) and (see_pred), ifort 17 works fine with this code, so bug reports are obsolete; @remark deleted

17 lines of code changed in 1 file:

sbu062 2017-05-24 21:32 Rev.: 3727

copy scheme of modules, forgotten cased broken pdf

2000 lines of code changed in 1 file:

sbu062 2017-05-24 21:12 Rev.: 3726

continue review and cleanup doxygen: removed further note, split paragraph; @remark deleted

8 lines of code changed in 1 file:

sbu062 2017-05-24 20:57 Rev.: 3725

small fixes: test @remark tag

28 lines of code changed in 1 file:

sbu062 2017-05-24 20:28 Rev.: 3724

fixed pdf doxygen creation, in case of error in make call pdflatex direct

1 lines of code changed in 1 file:

sbu062 2017-05-24 20:14 Rev.: 3723

continue review and cleanup doxygen: delete numbered subtitles

106 lines of code changed in 1 file:

sbu062 2017-05-24 19:26 Rev.: 3722

continue review and cleanup doxygen: disable numeric lists

29 lines of code changed in 1 file:

sbu062 2017-05-24 19:18 Rev.: 3721

continue review and cleanup doxygen: all obsolete notes removed

57 lines of code changed in 1 file:

sbu062 2017-05-24 19:06 Rev.: 3720

continue review and cleanup doxygen: more obsolete notes removed

15 lines of code changed in 1 file:

sbu062 2017-05-24 18:56 Rev.: 3719

continue review and cleanup doxygen: removed obsolete confusing notes on visual perception procedures

95 lines of code changed in 1 file:

sbu062 2017-05-24 18:27 Rev.: 3718

continue review and cleanup doxygen, deleted obsolete ifort bug reports fom doxy

170 lines of code changed in 1 file:

sbu062 2017-05-24 16:12 Rev.: 3717

continue review and cleanup doxygen

45 lines of code changed in 1 file:

sbu062 2017-05-24 14:41 Rev.: 3716

implemented (do_this) for 'FREEZING' behaviour class, expected conspecifics removed

44 lines of code changed in 1 file:

sbu062 2017-05-24 14:41 Rev.: 3715

forgotten omega weighting factor in doxy formula

4 lines of code changed in 1 file:

tla051 2017-05-24 14:03 Rev.: 3714

forward simulation debugged, now running and producing output

137 lines of code changed in 1 file:

sbu062 2017-05-24 11:18 Rev.: 3713

fixed head info; added direct and general predation risk in 'FREEZE'

14 lines of code changed in 1 file:

sbu062 2017-05-24 09:27 Rev.: 3712

continue review and cleanup doxygen

52 lines of code changed in 1 file:

sbu062 2017-05-24 08:08 Rev.: 3711

continue review and cleanup doxygen

32 lines of code changed in 1 file:

sbu062 2017-05-24 07:35

continue review and cleanup doxygen

80 lines of code changed in 3 files:

sbu062 2017-05-23 18:49 Rev.: 3707

more doxygen cleanups

14 lines of code changed in 1 file:

sbu062 2017-05-23 18:35 Rev.: 3706

doxygen cleanup in commondata

27 lines of code changed in 1 file:

sbu062 2017-05-23 17:47 Rev.: 3705

hgsubversion has broken some binary images, had to restore manually from svn repo

0 lines of code changed in 10 files:

sbu062 2017-05-23 17:29 Rev.: 3704

updated properties

3 lines of code changed in 1 file:

sbu062 2017-05-23 17:27 Rev.: 3703

deleted deprecated

0 lines of code changed in 1 file:

sbu062 2017-05-23 17:26 Rev.: 3702

updated paths to doxy images to point to local subdir 'dox'

3 lines of code changed in 1 file:

sbu062 2017-05-23 17:18 Rev.: 3701

copy modules scheme to hedg2

246 lines of code changed in 1 file:

sbu062 2017-05-23 17:12 Rev.: 3700

get one image back

0 lines of code changed in 2 files:

sbu062 2017-05-23 17:08

moving

12053 lines of code changed in 14 files:

sbu062 2017-05-23 17:02

moving

170093 lines of code changed in 102 files:

sbu062 2017-05-23 16:51 Rev.: 3641

moved image to hedg2_01

3575 lines of code changed in 2 files:

nzlcj 2017-05-23 11:25 Rev.: 3639

Coded together. Added forward part.

98 lines of code changed in 1 file:

sbu062 2017-05-23 09:43 Rev.: 3638

added ignore file

53 lines of code changed in 1 file:

sbu062 2017-05-23 09:37 Rev.: 3637

ignore PDFs in hg repo

3 lines of code changed in 1 file:

tla051 2017-05-23 08:27 Rev.: 3636

minor changes on the forward loop

35 lines of code changed in 1 file:

tla051 2017-05-23 07:15 Rev.: 3635

first attempted to add forward loop structure

29 lines of code changed in 1 file:

sbu062 2017-05-23 06:43 Rev.: 3634

additional notes on the integer-based gene

10 lines of code changed in 1 file:

tla051 2017-05-23 06:37 Rev.: 3633

minor bug fixes

9 lines of code changed in 1 file:

tla051 2017-05-22 13:51 Rev.: 3632

integrated vertical temp. profiles from function

39 lines of code changed in 1 file:

sbu062 2017-05-22 11:11 Rev.: 3631

fix doxy link to (parse_svn_version)

3 lines of code changed in 1 file:

sbu062 2017-05-22 09:55 Rev.: 3630

updated list added sergey ahaworkshop cloud pc

2 lines of code changed in 1 file:

cje012 2017-05-22 07:44 Rev.: 3629

Removed comments with old syntax and made the list with variable names easier to compare with that in the model.

40 lines of code changed in 1 file:

tla051 2017-05-22 07:12 Rev.: 3628

Gut capacity parameter updated to 3% from Giske and Aksnes 1992

1 lines of code changed in 1 file:

sbu062 2017-05-22 07:05 Rev.: 3627

did init procedure for freezing

5 lines of code changed in 1 file:

sbu062 2017-05-22 07:05 Rev.: 3626

svn revision number changed to revision id as mercurial is not numeric

1 lines of code changed in 1 file:

tla051 2017-05-22 07:00 Rev.: 3625

corrected depth loop, added comments to look trough together

79 lines of code changed in 1 file:

sbu062 2017-05-22 00:34 Rev.: 3624

deleted SVN from logger outputs, hg and svn both can be used

2 lines of code changed in 1 file:

sbu062 2017-05-22 00:26 Rev.: 3623

added more mercurial info on version hash

8 lines of code changed in 1 file:

sbu062 2017-05-21 23:41 Rev.: 3622

added hidden descriptor from svn

3 lines of code changed in 1 file:

sbu062 2017-05-21 23:39 Rev.: 3621

maintenance

0 lines of code changed in 1 file:

sbu062 2017-05-21 23:35 Rev.: 3620

added hidden file descriptor

3 lines of code changed in 1 file:

sbu062 2017-05-21 23:33 Rev.: 3619

Backed out changeset: 77b5ee5698b4

0 lines of code changed in 1 file:

sbu062 2017-05-21 23:23 Rev.: 3618

added bitbucket info on versio id

4 lines of code changed in 1 file:

sbu062 2017-05-21 22:38 Rev.: 3617

added bitbucket mercurial repo info in the version information

2 lines of code changed in 1 file:

sbu062 2017-05-21 21:38 Rev.: 3616

included hidden file descriptor

2 lines of code changed in 1 file:

sbu062 2017-05-21 21:30 Rev.: 3615

deleted changelog, boring to maintain, not essential; test transition to Mercurial, hgsubversion push

0 lines of code changed in 1 file:

sbu062 2017-05-21 20:30 Rev.: 3614

deleted svn-autogenerated changelog, maintenance involves some cost, also test hgsubversion push on newly imported repo

0 lines of code changed in 1 file:

sbu062 2017-05-21 18:22 Rev.: 3613

merged latest doc additions from HEDG02

8558 lines of code changed in 7 files:

sbu062 2017-05-19 14:41 Rev.: 3612

small updated comments on freezing

5 lines of code changed in 1 file:

sbu062 2017-05-19 13:52 Rev.: 3611

added parameter is_freezing to all predation risk frontends

48 lines of code changed in 1 file:

jwe041 2017-05-19 13:21 Rev.: 3610

New figures forward simulation (2)

0 lines of code changed in 1 file:

jwe041 2017-05-19 13:20 Rev.: 3609

New figures forward simulation

0 lines of code changed in 1 file:

jwe041 2017-05-19 13:18 Rev.: 3608

0 lines of code changed in 1 file:

sbu062 2017-05-19 12:07 Rev.: 3607

small fix

2 lines of code changed in 1 file:

sbu062 2017-05-19 12:03 Rev.: 3606

added htintrpl instruction to generate plots

9 lines of code changed in 1 file:

sbu062 2017-05-19 12:02 Rev.: 3605

updated plot

2038 lines of code changed in 2 files:

sbu062 2017-05-19 11:51 Rev.: 3604

implemented probability of predator capture of freezing/immobile agent

155 lines of code changed in 1 file:

sbu062 2017-05-19 11:44 Rev.: 3603

added plots for probability of capture of freezing/immobile agent

0 lines of code changed in 2 files:

sbu062 2017-05-19 09:34 Rev.: 3602

added short descriptions to motivation components 'PERCEPT_COMPONENTS_MOTIV'

21 lines of code changed in 1 file:

sbu062 2017-05-19 08:30 Rev.: 3601

deleted old obsolete branch. the latest work has been done an year ago.

On 02/13/2017 04:05 PM, Sergey Budaev wrote:
> Camilla and Jacqueline,
>
> There are your old branches in */branches/camilla/hormones/* and
> */branches/jacqueline/hormones/* . It seems all the work is now done in
> *hormones_v2 *and branches therein.
>
> _Do you need the old v1 branches?_ I was thinking about *deleting the v1
> branches* to avoid clutter. But please note that nothing can be actually
> deleted from Subversion, so they are not deleted actually, just won't
> appear in checkouts and updates and be deleted from your disk if you
> keep a copy of your whole repository. They can be easily reverted if
> required.
>
> Regards,
>
> Sergey
>

0 lines of code changed in 57 files:

sbu062 2017-05-19 08:20 Rev.: 3600

deleted work branch developing 'pred_direct', direct predation component in the 'PERCEPT_COMPONENTS_MOTIV' class

0 lines of code changed in 1 file:

sbu062 2017-05-19 08:19 Rev.: 3599

merged work branch developing 'pred_direct', direct predation component in the 'PERCEPT_COMPONENTS_MOTIV' class, updated all neurobiology accordingly, tested

386 lines of code changed in 1 file:

sbu062 2017-05-18 15:08 Rev.: 3598

stage 3: fixed boolean genotype x phenotype values for pred_direct followers (6+ each chromosome)

48 lines of code changed in 1 file:

cje012 2017-05-18 14:01 Rev.: 3597

Minor changes.

3 lines of code changed in 2 files:

cje012 2017-05-18 14:01 Rev.: 3596

Added plotting for forward simulation.

49 lines of code changed in 1 file:

sbu062 2017-05-18 12:57 Rev.: 3595

stage 2: did checks for pred_dir, direct predation perception component is now implemented throughout. increased predation 100,1000 to 1000,8000; logging capture probability for predator and food items discernible log messages

7 lines of code changed in 1 file:

cje012 2017-05-18 10:35 Rev.: 3594

Changed some comments and made them easier to understand.

6 lines of code changed in 1 file:

sbu062 2017-05-16 22:23 Rev.: 3593

implemented wrapper (predation_capture_probability_risk_wrapper) for use in neuronal response wrapper

29 lines of code changed in 1 file:

sbu062 2017-05-16 21:33 Rev.: 3592

fixed paameter 'param_gene_label_pred_dir'

4 lines of code changed in 1 file:

sbu062 2017-05-16 20:47 Rev.: 3591

did parameter 'param_gerror_cv_pred_dir'

20 lines of code changed in 1 file:

sbu062 2017-05-16 20:35 Rev.: 3590

fixed parameters 'param_gp_matrix_pred_dir'

20 lines of code changed in 1 file:

sbu062 2017-05-16 20:16 Rev.: 3589

added boolean genotype matrices for PRED_DIR; weights 'weight_pred_dir'

156 lines of code changed in 1 file:

sbu062 2017-05-16 19:31 Rev.: 3588

fix non-overriden init_val

3 lines of code changed in 1 file:

sbu062 2017-05-16 18:29 Rev.: 3587

stage 1: added component %pred_dir to all objects %predator, weights added in neuronal response function

0 lines of code changed in 2 files:

sbu062 2017-05-16 17:04 Rev.: 3585

fixed link to risk_fish() in doxygen

4 lines of code changed in 1 file:

sbu062 2017-05-16 16:30 Rev.: 3584

added example call

6 lines of code changed in 1 file:

sbu062 2017-05-16 15:09 Rev.: 3583

implemented (risk_pred) method class PERCEPTION, generic accepts PREDATOR class objects or spatial object components (for subjective assessment), refactored completely, deleted select type - based code as dangerous (optional parameters can not be provided). Many other changes renamed predator_attack_efficiency_cv, predator attack rate and body size check and limit sane ranges, objective minimum probability of agent's capture now non-zero, defined by PREDATOR_ATTACK_CAPTURE_PROBABILITY_MIN (subjective still zero).

178 lines of code changed in 1 file:

sbu062 2017-05-16 11:07 Rev.: 3582

fixed mixed numeric+character data output in (habitat_save_predators_csv)

18 lines of code changed in 1 file:

sbu062 2017-05-16 10:22 Rev.: 3581

save predators in (init_environment_objects)

5 lines of code changed in 1 file:

sbu062 2017-05-16 10:17 Rev.: 3580

implemented (save_predators_csv) for predators; debug code at 25641,17

51 lines of code changed in 1 file:

sbu062 2017-05-15 19:46 Rev.: 3579

named params in (predator_capture_probability_calculate)

4 lines of code changed in 1 file:

sbu062 2017-05-15 19:25 Rev.: 3578

named parameters in (predator_capture_probability_calculate)

5 lines of code changed in 1 file:

sbu062 2017-05-15 19:11 Rev.: 3577

cleanup memory optional in (perception_objects_destroy)

7 lines of code changed in 1 file:

sbu062 2017-05-15 18:59 Rev.: 3576

done (destroy_perceptions); redeclared all destroy methods elemental

38 lines of code changed in 1 file:

cje012 2017-05-15 14:49 Rev.: 3575

Added some comments.

1 lines of code changed in 1 file:

cje012 2017-05-15 14:40 Rev.: 3574

Added some new comments.

9 lines of code changed in 1 file:

cje012 2017-05-15 14:35 Rev.: 3573

Started coding plots for the forward function, but it is far from finished.

91 lines of code changed in 1 file:

cje012 2017-05-15 14:33 Rev.: 3572

Added function for calculating a random integer

36 lines of code changed in 1 file:

cje012 2017-05-15 14:33 Rev.: 3571

Cleaned up and made sure the code is running after we coded together.

45 lines of code changed in 1 file:

sbu062 2017-05-15 13:40 Rev.: 3570

added predator attack rate into perception, not tested well so far; debug code

112 lines of code changed in 1 file:

nzlcj 2017-05-15 12:02 Rev.: 3569

Coded together. Added environmnetal stochasticity to forward part.

52 lines of code changed in 1 file:

cje012 2017-05-15 11:58 Rev.: 3568

Removed unused line

1 lines of code changed in 1 file:

cje012 2017-05-15 10:54 Rev.: 3567

Minor changes

166 lines of code changed in 1 file:

sbu062 2017-05-15 10:02 Rev.: 3566

fix wrong labels in doc

3 lines of code changed in 1 file:

sbu062 2017-05-15 10:00 Rev.: 3565

(predator_capture_probability_calculate) gets predator as class SPATIAL now, with additional mandatory dummy parameters

46 lines of code changed in 1 file:

nzlcj 2017-05-15 07:46 Rev.: 3564

Coded together. Fixed array problem with z_opt in optimization.

9 lines of code changed in 1 file:

cje012 2017-05-15 07:33 Rev.: 3563

Minor changes to comments.

179 lines of code changed in 1 file:

tla051 2017-05-15 07:18 Rev.: 3562

adapted depth loop to run over depth increments >1m

41 lines of code changed in 1 file:

tla051 2017-05-12 13:45 Rev.: 3561

modified to allow model resolution in increment <1, for days and latitudes

27 lines of code changed in 1 file:

tla051 2017-05-12 13:44 Rev.: 3560

module containing function to save .bin light file for matlab analysis

5 lines of code changed in 1 file:

tla051 2017-05-12 13:44 Rev.: 3559

modified to allow model resolution in increment <1, for days and latitudes

87 lines of code changed in 1 file:

sbu062 2017-05-12 13:33 Rev.: 3558

fex link

2 lines of code changed in 1 file:

sbu062 2017-05-12 13:29 Rev.: 3557

added doc for interface

5 lines of code changed in 1 file:

sbu062 2017-05-12 13:26 Rev.: 3556

another small fix

1 lines of code changed in 1 file:

sbu062 2017-05-12 13:18 Rev.: 3555

deleted all optional parameters from the example call

1 lines of code changed in 1 file:

sbu062 2017-05-12 13:05 Rev.: 3554

more clear reference to the attack rate

3 lines of code changed in 1 file:

sbu062 2017-05-12 13:00 Rev.: 3553

fix wrong module name in ref

3 lines of code changed in 1 file:

sbu062 2017-05-12 12:58 Rev.: 3552

micro fix

2 lines of code changed in 1 file:

sbu062 2017-05-12 12:56 Rev.: 3551

added usage notes for backend and frontend predation risk procs

23 lines of code changed in 1 file:

sbu062 2017-05-12 12:43 Rev.: 3550

converted to formulas in (predator_capture_risk_calculate_fish)

3 lines of code changed in 1 file:

sbu062 2017-05-12 12:40 Rev.: 3549

added more description and scheme in the backend (predator_capture_risk_calculate_fish)

8 lines of code changed in 1 file:

sbu062 2017-05-12 12:36 Rev.: 3548

added picture illustrating visual ranges for the predator and prey

0 lines of code changed in 3 files:

sbu062 2017-05-12 10:29 Rev.: 3547

added to doc on (predator_capture_risk_calculate_fish)

6 lines of code changed in 1 file:

sbu062 2017-05-12 10:23 Rev.: 3546

(risk_pred) moved to perception to be able to check (has_pred) method

71 lines of code changed in 1 file:

sbu062 2017-05-12 09:57 Rev.: 3545

did initial (predator_capture_probability_calculate), should move to perception layer yet

76 lines of code changed in 1 file:

cje012 2017-05-12 08:59 Rev.: 3544

Minor changes

166 lines of code changed in 1 file:

cje012 2017-05-12 08:57 Rev.: 3543

Added timer for runtime.

177 lines of code changed in 1 file:

cje012 2017-05-12 07:59 Rev.: 3542

Removed comments from forward simulation. NOTE! This version will not run unless you comment out the code for the forward simulation.

167 lines of code changed in 2 files:

sbu062 2017-05-11 18:23 Rev.: 3541

merged latest changes

9433 lines of code changed in 7 files:

sbu062 2017-05-11 18:10 Rev.: 3540

fixed doxygen docs for (risk_fish); fixed refs to 'Global_Time_Step_Model_Current' global

16 lines of code changed in 1 file:

sbu062 2017-05-11 17:50 Rev.: 3539

(predator_capture_risk_calculate_fish) implemented, predato-bound

81 lines of code changed in 1 file:

sbu062 2017-05-11 17:47 Rev.: 3538

added predator capture interpolation curve

2218 lines of code changed in 2 files:

sbu062 2017-05-11 16:22 Rev.: 3537

moved (length2sidearea_fish) to commondata; initial skeleton for (predator_capture_risk_calculate_fish)

101 lines of code changed in 1 file:

sbu062 2017-05-11 15:19 Rev.: 3536

further fixing predator get_attack_rate renames of accessors

9 lines of code changed in 1 file:

sbu062 2017-05-11 13:33 Rev.: 3535

renamed 'capture_efficiency' to 'attack_rate' in predator object

24 lines of code changed in 1 file:

sbu062 2017-05-11 12:46 Rev.: 3534

started (do_this) for FREEZE

21 lines of code changed in 1 file:

cje012 2017-05-10 14:16 Rev.: 3533

Minor changes.

170 lines of code changed in 1 file:

cje012 2017-05-10 14:15 Rev.: 3532

Added posibility to plot one plot for every environment for strategies and fitness, to be used for making gifs.

125 lines of code changed in 1 file:

sbu062 2017-05-10 11:59 Rev.: 3531

fix wrong tag

1 lines of code changed in 1 file:

sbu062 2017-05-10 11:54 Rev.: 3530

better documented interface for (neuro_resp)

2 lines of code changed in 1 file:

sbu062 2017-05-10 11:49 Rev.: 3529

added small usage outlook for gamma2gene doxygen

4 lines of code changed in 1 file:

nzlcj 2017-05-10 10:28 Rev.: 3528

Coded together. Minor changes.

2 lines of code changed in 1 file:

nzlcj 2017-05-10 10:28 Rev.: 3527

Coded together. Added bioenergetics, optimization.

47 lines of code changed in 1 file:

sbu062 2017-05-10 09:42 Rev.: 3526

refactor MOVE base class, deleted speed, distance is the main data component now, collapsed up/down to conform MOVE standard, 'step_depth' unified to common 'distance'

22 lines of code changed in 1 file:

cje012 2017-05-10 09:27 Rev.: 3525

Removed conversion_efficency and environmental_scaling as they are no longer in use.

2 lines of code changed in 1 file:

cje012 2017-05-10 09:25 Rev.: 3524

Added environmental dimension to the strategy, fitness and fitnessconsequences arrays. Removed variables that are no longer in use and added new variables to reflect the changes in functions.f90 and new code from last commit.

68 lines of code changed in 1 file:

cje012 2017-05-10 09:19 Rev.: 3523

Fixed autocorrelated() to run properly, was stuck in do while loop after last commit.

10 lines of code changed in 1 file:

cje012 2017-05-10 09:15 Rev.: 3522

Added posibility to write 5D integer arrays and 4D real arrays to binary files.

57 lines of code changed in 1 file:

sbu062 2017-05-10 09:10 Rev.: 3521

rename maxdepth for transparency

3 lines of code changed in 1 file:

sbu062 2017-05-10 09:03 Rev.: 3520

fix link to environment not spatial

8 lines of code changed in 1 file:

tla051 2017-05-10 08:41 Rev.: 3519

code cleaned up

1 lines of code changed in 1 file:

tla051 2017-05-10 08:40 Rev.: 3518

bioenergetics parametrized after Hewett and Johnson 1992

46 lines of code changed in 1 file:

tla051 2017-05-10 07:06 Rev.: 3517

cleaned up code, bugs fixed, added units as comments, first attempt to include bioenergetic calculations

195 lines of code changed in 1 file:

tla051 2017-05-10 07:05 Rev.: 3516

cleaned up code, added units as comments

56 lines of code changed in 1 file:

sbu062 2017-05-09 19:02 Rev.: 3515

small fix

1 lines of code changed in 1 file:

sbu062 2017-05-09 16:04 Rev.: 3514

another small fix doc

2 lines of code changed in 1 file:

sbu062 2017-05-09 15:57 Rev.: 3513

small fix doc

1 lines of code changed in 1 file:

sbu062 2017-05-09 15:53 Rev.: 3512

further fix

1 lines of code changed in 1 file:

sbu062 2017-05-09 15:49 Rev.: 3511

another small fix doc link

8 lines of code changed in 1 file:

sbu062 2017-05-09 15:39 Rev.: 3510

small fix doc link

8 lines of code changed in 1 file:

sbu062 2017-05-09 15:24 Rev.: 3509

small change

2 lines of code changed in 1 file:

sbu062 2017-05-09 14:56 Rev.: 3508

change agent position in (execute)

14 lines of code changed in 1 file:

cje012 2017-05-09 13:23 Rev.: 3507

Plotting in R, currently just plots for variables under environment.

8 lines of code changed in 1 file:

nzlcj 2017-05-09 13:16 Rev.: 3506

Coded together. Added loops for environmental stochasticity and optimization in backwards routine.

25 lines of code changed in 1 file:

nzlcj 2017-05-09 13:15 Rev.: 3505

Coded together. Changed autocorrelation for conceptual clarity.

11 lines of code changed in 1 file:

sbu062 2017-05-09 12:56 Rev.: 3504

implemented (go_up_do_execute), both up and down behaviours now ready

128 lines of code changed in 1 file:

sbu062 2017-05-09 12:28 Rev.: 3503

check up/down step size pseudoisolated into block 'GET_MAXDEPTH'; implemented (execute) method for GO_DOWN_STEP

174 lines of code changed in 1 file:

sbu062 2017-05-09 10:53 Rev.: 3502

fixed init for up (go_up_depth_init_zero) forgottent so far

4 lines of code changed in 1 file:

sbu062 2017-05-09 10:51 Rev.: 3501

finally fixed the up and down procedures

12 lines of code changed in 1 file:

sbu062 2017-05-09 09:37 Rev.: 3500

fixed (go_up_motivations_expect)

47 lines of code changed in 1 file:

nzlcj 2017-05-09 07:51 Rev.: 3499

Coded together. Generalized subroutine call for visual predation.

15 lines of code changed in 1 file:

nzlcj 2017-05-09 07:51 Rev.: 3498

Coded together. Generalized subroutine call for visual predation. Moved light-dependent calculations. Some other structural changes so that Tom can implement bioenergetics.

59 lines of code changed in 1 file:

tla051 2017-05-09 07:03 Rev.: 3497

change in predation loop

59 lines of code changed in 1 file:

sbu062 2017-05-09 00:18 Rev.: 3496

sterted fixing (go_up_do_this)

22 lines of code changed in 1 file:

sbu062 2017-05-08 23:45 Rev.: 3495

added doxygen formula

6 lines of code changed in 1 file:

sbu062 2017-05-08 23:21 Rev.: 3494

shifted (depth_walk_default) upwards

27 lines of code changed in 1 file:

sbu062 2017-05-08 20:28 Rev.: 3493

use now (depth_walk_default) in 'up'

4 lines of code changed in 1 file:

sbu062 2017-05-08 20:25 Rev.: 3492

now use (depth_walk_default) in 'down'

5 lines of code changed in 1 file:

sbu062 2017-05-08 20:18 Rev.: 3491

default up/down walk size now isolated into (depth_walk_default)

29 lines of code changed in 1 file:

sbu062 2017-05-08 19:10 Rev.: 3490

reorder parameters for consistency in (go_down_motivations_expect)

10 lines of code changed in 1 file:

sbu062 2017-05-08 18:14 Rev.: 3489

small changes in (go_down_motivations_expect)

15 lines of code changed in 1 file:

sbu062 2017-05-08 17:37 Rev.: 3488

refactor for automatic maximum and minimum depth

54 lines of code changed in 1 file:

sbu062 2017-05-08 13:34 Rev.: 3487

fixing minimum/maximum depth in do_this for move down, implemented functions (depth_min) and (depth_max) for environment objects, initial checks in (do_this)

57 lines of code changed in 1 file:

sbu062 2017-05-08 12:35 Rev.: 3486

implemented identify function (find_environment)

51 lines of code changed in 1 file:

sbu062 2017-05-08 11:52 Rev.: 3485

(go_up_motivations_expect) done

494 lines of code changed in 1 file:

sbu062 2017-05-08 10:57 Rev.: 3484

done (go_up_do_this)

124 lines of code changed in 1 file:

sbu062 2017-05-08 10:43 Rev.: 3483

done (go_down_motivations_expect): added motivation calcs after neuronal function

45 lines of code changed in 1 file:

sbu062 2017-05-06 09:05 Rev.: 3482

add subtitle

1 lines of code changed in 1 file:

sbu062 2017-05-06 09:01 Rev.: 3481

converted to list

19 lines of code changed in 1 file:

sbu062 2017-05-05 17:48 Rev.: 3480

another small fix

1 lines of code changed in 1 file:

sbu062 2017-05-05 17:39 Rev.: 3479

small fix doc

1 lines of code changed in 1 file:

sbu062 2017-05-05 17:37 Rev.: 3478

another small fix doc

2 lines of code changed in 1 file:

sbu062 2017-05-05 17:33 Rev.: 3477

another fix doc

3 lines of code changed in 1 file:

sbu062 2017-05-05 17:30 Rev.: 3476

small fix

1 lines of code changed in 1 file:

sbu062 2017-05-05 17:28 Rev.: 3475

fixed parameter descriptor

1 lines of code changed in 1 file:

sbu062 2017-05-05 17:22 Rev.: 3474

fixed docs comments

30 lines of code changed in 1 file:

sbu062 2017-05-05 17:04 Rev.: 3473

added interface (expectancies_calculate)

12 lines of code changed in 1 file:

sbu062 2017-05-05 16:59 Rev.: 3472

fix comments

19 lines of code changed in 1 file:

sbu062 2017-05-05 16:51 Rev.: 3471

continued (go_down_motivations_expect): added simple environmental perception overrides, inserted motivational expectancies by calling (motivation_components) method for all motivations

238 lines of code changed in 1 file:

sbu062 2017-05-05 15:52 Rev.: 3470

small reformat

2 lines of code changed in 1 file:

sbu062 2017-05-05 14:14 Rev.: 3469

refactor (go_down_motivations_expect) added fake perception of energy reserves

28 lines of code changed in 1 file:

sbu062 2017-05-05 13:41 Rev.: 3468

fix (go_down_motivations_expect): use this%expected_food_gain and this%decrement_mass_cost

16 lines of code changed in 1 file:

sbu062 2017-05-05 12:58 Rev.: 3467

cleanup doc

11 lines of code changed in 1 file:

sbu062 2017-05-05 12:53 Rev.: 3466

continue (go_down_motivations_expect): expected mass and stomach increments weighted by capture probability; cleanyup titles in doxygen docs

12 lines of code changed in 1 file:

sbu062 2017-05-05 12:41 Rev.: 3465

implemented preparatory steps for (go_down_motivations_expect); also did the reverse function (mass2size_food)

170 lines of code changed in 1 file:

cje012 2017-05-05 11:18 Rev.: 3464

Minor changes.

24 lines of code changed in 1 file:

cje012 2017-05-05 10:48 Rev.: 3463

Made the code more future proof, reproducible and flexible.

2 lines of code changed in 1 file:

sbu062 2017-05-05 10:26 Rev.: 3462

(go_down_motivations_expect) header

13 lines of code changed in 1 file:

sbu062 2017-05-05 09:58 Rev.: 3461

added more comments

13 lines of code changed in 1 file:

cje012 2017-05-05 09:37 Rev.: 3460

Fixed small mistake.

2 lines of code changed in 1 file:

cje012 2017-05-05 09:27 Rev.: 3459

Modified rnorm to use double precision, as a high precition from random numbers is not needed.

11 lines of code changed in 1 file:

cje012 2017-05-05 08:57 Rev.: 3458

Added alternative calculations for random number from normal distribution, modified from RNORM_R8 in HEDTOOLS BASE_RANDOM.f90

79 lines of code changed in 1 file:

sbu062 2017-05-05 08:52 Rev.: 3457

comments added

5 lines of code changed in 1 file:

sbu062 2017-05-05 08:44 Rev.: 3456

done (go_down_do_this), added parameters; clean up (cost_swim)

76 lines of code changed in 1 file:

sbu062 2017-05-05 05:01 Rev.: 3455

minor change

2 lines of code changed in 1 file:

sbu062 2017-05-05 05:01 Rev.: 3454

added to (go_down_do_this) and default step parameter

25 lines of code changed in 1 file:

tla051 2017-05-04 14:08 Rev.: 3453

input table for subroutine_visual_predation amended and parametrized with preliminary values
! work in progress, integrate use of units of energy (J and kJ) !

88 lines of code changed in 1 file:

tla051 2017-05-04 14:05 Rev.: 3452

BeamAtt, PreyHandlingTime, pc ,WW_DW_Cal, Cal_J_gWW, Cal_mgdw added to the input, subroutine now allows foraging output in units of energy (J)

47 lines of code changed in 1 file:

sbu062 2017-05-04 14:05 Rev.: 3451

zero count results in MISSING value distance in all above/below distance perceptions

8 lines of code changed in 1 file:

sbu062 2017-05-04 14:02 Rev.: 3450

return missing value of distance in food perception below/above procedures

10 lines of code changed in 1 file:

sbu062 2017-05-04 13:56 Rev.: 3449

check for missing distance in (food_item_capture_probability_calc)

6 lines of code changed in 1 file:

sbu062 2017-05-04 13:37 Rev.: 3448

another reformat

0 lines of code changed in 1 file:

sbu062 2017-05-04 13:36 Rev.: 3447

reformat only

0 lines of code changed in 1 file:

sbu062 2017-05-04 13:33 Rev.: 3446

done interfaces (pred_dist_below) and (pred_dist_above)

10 lines of code changed in 1 file:

sbu062 2017-05-04 13:27 Rev.: 3445

added interfaces (consp_dist_below) and (consp_dist_above)

10 lines of code changed in 1 file:

sbu062 2017-05-04 13:04 Rev.: 3444

fix length reformat for the nes procedures

4 lines of code changed in 1 file:

sbu062 2017-05-04 13:02 Rev.: 3443

interfaces added (food_dist_below) and (food_dist_above)

8 lines of code changed in 1 file:

sbu062 2017-05-04 12:57 Rev.: 3442

code width fix reformat

12 lines of code changed in 1 file:

sbu062 2017-05-04 12:52 Rev.: 3441

done (perception_predator_dist_below_calculate) and (perception_predator_dist_above_calculate)

112 lines of code changed in 1 file:

sbu062 2017-05-04 12:46 Rev.: 3440

done (perception_consp_dist_below_calculate) and (perception_consp_dist_above_calculate)

106 lines of code changed in 1 file:

sbu062 2017-05-04 12:37 Rev.: 3439

small reformats and comments

4 lines of code changed in 1 file:

sbu062 2017-05-04 12:34 Rev.: 3438

done (perception_food_dist_below_calculate) and (perception_food_dist_above_calculate)

122 lines of code changed in 1 file:

sbu062 2017-05-04 12:13 Rev.: 3437

small format fix the_environment::

4 lines of code changed in 1 file:

sbu062 2017-05-04 11:51 Rev.: 3436

additional data components in GO_DOWN_DEPTH class

10 lines of code changed in 1 file:

sbu062 2017-05-04 11:39 Rev.: 3435

debug code small fix

1 lines of code changed in 1 file:

sbu062 2017-05-04 10:55 Rev.: 3434

debug code, removed double spatial init

7 lines of code changed in 1 file:

sbu062 2017-05-04 09:29 Rev.: 3433

debug code output to logger

5 lines of code changed in 1 file:

sbu062 2017-05-04 09:25 Rev.: 3432

formatting only

2 lines of code changed in 1 file:

sbu062 2017-05-04 09:23 Rev.: 3431

fix zero count in means, positional functions below/above for food items in PERCEPTION class; debug code change

44 lines of code changed in 1 file:

sbu062 2017-05-04 08:04 Rev.: 3430

generic interfaces (pred_below) and (pred_above)

22 lines of code changed in 1 file:

sbu062 2017-05-04 06:42 Rev.: 3429

done (perception_predator_below_horiz_calculate) and ( perception_predator_above_horiz_calculate)

83 lines of code changed in 1 file:

sbu062 2017-05-04 06:36 Rev.: 3428

small fix

1 lines of code changed in 1 file:

sbu062 2017-05-04 06:31 Rev.: 3427

interfaces (pred_below_all) and (pred_above_all)

11 lines of code changed in 1 file:

sbu062 2017-05-04 06:26 Rev.: 3426

done (perception_predator_below_calculate) and (perception_predator_above_calculate)

78 lines of code changed in 1 file:

sbu062 2017-05-04 04:33 Rev.: 3425

code width fix

8 lines of code changed in 1 file:

sbu062 2017-05-04 04:30 Rev.: 3424

small reformat

2 lines of code changed in 1 file:

sbu062 2017-05-04 04:29 Rev.: 3423

implemented consecifics below/above procedures (consp_below) and (consp_above)

107 lines of code changed in 1 file:

sbu062 2017-05-04 04:09 Rev.: 3422

another small fix comments

2 lines of code changed in 1 file:

sbu062 2017-05-04 04:07 Rev.: 3421

renamed number_below

4 lines of code changed in 1 file:

sbu062 2017-05-04 04:05 Rev.: 3420

small fix

1 lines of code changed in 1 file:

sbu062 2017-05-04 04:04 Rev.: 3419

done (perception_conspecifics_below_calculate) and (perception_conspecifics_above_calculate)

107 lines of code changed in 1 file:

sbu062 2017-05-04 03:04 Rev.: 3418

doxygen fix in (has_food)

9 lines of code changed in 1 file:

sbu062 2017-05-04 02:55 Rev.: 3417

debug code delete

0 lines of code changed in 1 file:

sbu062 2017-05-04 02:54 Rev.: 3416

shift the position of the agent to the food item eaten in (behaviour_do_eat_food_item), cleanup doxygen comments inside too

26 lines of code changed in 1 file:

sbu062 2017-05-03 18:50 Rev.: 3415

fix comment

3 lines of code changed in 1 file:

sbu062 2017-05-03 18:10 Rev.: 3414

small fix doxygen

1 lines of code changed in 1 file:

sbu062 2017-05-03 17:11 Rev.: 3413

(perception_predation_risk_objective) now uses the (predation_risk_backend)

40 lines of code changed in 1 file:

sbu062 2017-05-03 15:53 Rev.: 3412

small reformat

2 lines of code changed in 1 file:

sbu062 2017-05-03 15:51 Rev.: 3411

did (predation_risk_backend), not used so far

25 lines of code changed in 1 file:

sbu062 2017-05-03 15:38 Rev.: 3410

(perception_predation_risk_objective) redeclared elemental

2 lines of code changed in 1 file:

sbu062 2017-05-03 15:16 Rev.: 3409

debug code, agent positions to the eaten food items on consumption

13 lines of code changed in 1 file:

sbu062 2017-05-03 14:28 Rev.: 3408

starting template for do_this for GO_DOWN_DEPTH class

13 lines of code changed in 1 file:

sbu062 2017-05-03 14:12 Rev.: 3407

micro fix formatting

4 lines of code changed in 1 file:

sbu062 2017-05-03 14:10 Rev.: 3406

addad implementation with user-defined operator, disabled so far

12 lines of code changed in 1 file:

sbu062 2017-05-03 13:57 Rev.: 3405

another small addition to comments

9 lines of code changed in 1 file:

sbu062 2017-05-03 13:53 Rev.: 3404

small chenge comments only

3 lines of code changed in 1 file:

sbu062 2017-05-03 13:36 Rev.: 3403

user defined operator .within. for intrinsic types

72 lines of code changed in 1 file:

cje012 2017-05-02 14:32 Rev.: 3402

Removed ds that could affect the results of the equation when we use selected_real_kind. This also makes the model more flexible :)

18 lines of code changed in 1 file:

cje012 2017-05-02 14:08 Rev.: 3401

Removed ds that could affect the results of the equation when we use selected_real_kind.

1 lines of code changed in 1 file:

cje012 2017-05-02 14:01 Rev.: 3400

Fixed error in stocastic environment by adding a do loop.

4 lines of code changed in 1 file:

cje012 2017-05-02 12:02 Rev.: 3399

Added subroutine for writing 1D real arrays to binary.

28 lines of code changed in 1 file:

cje012 2017-05-02 12:02 Rev.: 3398

Fixed calculation error in the function for autocorrelation.

5 lines of code changed in 1 file:

cje012 2017-05-02 11:55 Rev.: 3397

Almost finished but some problems with calculating ProbOfE

14 lines of code changed in 1 file:

April 2017 »

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