small fix doxy doc
2 lines of code changed in 1 file:
fully implemented (do_this) method for ESCAPE_DART: now use the (visibility) method for SPATIALOBJ_PERCEPT_COMP
15 lines of code changed in 1 file:
implemented (visibility) method for spatialobj_percept_comp class: (spatialobj_percept_visibility_visual_range)
77 lines of code changed in 1 file:
more code for escape dart (do_this) method: done predation risk calcs
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more code for escape dart (do_this) method: done escape distance calculation
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more code for escape dart (do_this) method: done visibility range calculation block
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implemented (visibility) method for predator object; more code for escape dart (do_this) method
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initial skeleton for (escape_dart_do_this)
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small fix
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added public interface for (execute) for FREEZING
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small fix formatting log
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implemented (execute) method for freezing
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simplified doxy comments in certain (expectancies_calculate)
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reformat freezing class code, add doxygen short info in class procedure interfaces
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in (freeze_motivations_expect) dismantle block construct
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deleted headurl
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done primary and final motivations in (freeze_motivations_expect): (expectancies_calculate) is fully implemented for freezing behaviour
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dleted manual version info from link to graphics tools
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dleted obsolete file
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added filesystem tree and additional configs
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added configuration options for init
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added nginx config
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added initial debian server install script
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fixed echo
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fixed copying
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made executable
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added executable properties
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added index page generation script
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updated HEDTOOLS plot tools download link latest version
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updated HEDTOOLS download link latest version
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added statsvn for easy deployment
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made ZERO the base point for perception overrides, not 0.0.
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refactor expectancies in (go_down_motivations_expect): decrement cost of living from mass and digestion
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refactor expectancies in (reproduce_motivations_expect): decrement cost of living from mass
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refactor expectancies in (eat_food_item_motivations_expect): decrement digestion from stomach contents; decrement cost of living from mass
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continue implementing (freeze_motivations_expect), done stage 3: Calculate motivation expectancies. WARN: include living cost and digestion subtractions into expectancy calculations
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added (stomach_emptify_backend); call it now in (stomach_content_mass_emptify_step); small additions to (freeze_motivations_expect)
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added skeleton (freeze_motivations_expect)
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daily average included
35 lines of code changed in 2 files:
updated crossover schemes, svg's also rescaled to 600px
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updated new schemes in code, svg's rescaled to 600px
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schemes redone with explicit homologues, old removed
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lims inclusion changed
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plots refined
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refactor fully random recombination (recombine_random), added partially random recombination backend (recombine_partial)
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fix size 600 px
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fixed plot for fixed genetic crossover
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inserted plot for fixed genetic crossover into doxygen
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added plot for fixed genetic crossover
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fix note
1 lines of code changed in 1 file:
small formatting
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inserted recombination scheme into code, svn chart reduced to 500 px width
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added recombination scheme doxy plot
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procedure (genome_individual_crossover_homol_rand_alleles) is now parallel, based on nested 'do concurrent' loops
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formatting code in (genome_individual_crossover_homol_rand_alleles)
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initial version of fixed genetic crossover engine (genome_individual_recombine_homol_rand_alleles)
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prepare for fixed genetic crossover procedure, renamed (genome_individual_crossover_homol_rand_alleles) to (genome_individual_recombine_homol_rand_alleles)
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minor changes in in (genome_individual_crossover_homol_rand_alleles)
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fixed doxygen docs in (genome_individual_crossover_homol_rand_alleles)
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fixed subtitles in (genome_individual_crossover_homol_rand_alleles)
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continue implementing skeleton genetic crossover engine, (genome_individual_crossover_homol_rand_alleles) fully implemented
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continue implementing skeleton genetic crossover engine, cleanup code (genome_individual_crossover_homol_rand_alleles)
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continue implementing skeleton genetic crossover engine, (genome_individual_crossover_homol_rand_alleles)
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Changes to plots due to changes in model.
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Added a new variable end_status to forward that records if the individual reaches max length, dies or runs out of time.
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cleanup (visual_range) frontend: added subtitle, higher visibility in doxygen
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added link to all implementations of visual_range function superset
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increased visual range sample plots
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initial skeleton for genetic crossover at INDIVIDUAL_GENOME
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customized plotting function
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read .bin files (fortran output) into matlab
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plot forward simulations
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minor bug fixes, include other input variables
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minor bug fixes and gut converted from g to j
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continue review and cleanup doxygen: small fix
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continue review and cleanup doxygen: small fix
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continue review and cleanup doxygen: small fix
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continue review and cleanup doxygen: converted docs for named blocks to lists
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continue review and cleanup doxygen: converted docs for named blocks to lists in (predator_capture_risk_calculate_fish)
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continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item); added howto in doxygen doc style
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continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item)
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continue review and cleanup doxygen: sub-procedure link fixed in (behaviour_select_food_item)
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continue review and cleanup doxygen: descriptions in (behaviour_select_food_item) fixed
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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continue review and cleanup doxygen: fixes in visual range frontends
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moved old hormones v1 branch as subbranch into R, the only valuable thing is calling fortran from R
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delete obsolete copy of camilla's h2
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continue review and cleanup doxygen: small fix
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continue review and cleanup doxygen: small fixes
3 lines of code changed in 1 file:
updated info on screen output mode
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updated scheme motivation: added direct predation risk component
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updated scheme appraisal: added direct predation risk component (perceptual components of motivation) that has been added recently (svn r3599)
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continue review and cleanup doxygen: fix lists
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added a general introductory note on spatial perception routines (see_food), (see_consp) and (see_pred)
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continue review and cleanup doxygen: small reformat formula
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continue review and cleanup doxygen: finally deleted huge sparse non-doxygen comment notes including ifort 13 bug reports in (see_food), (see_consp) and (see_pred), ifort 17 works fine with this code, so bug reports are obsolete; @remark deleted
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copy scheme of modules, forgotten cased broken pdf
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continue review and cleanup doxygen: removed further note, split paragraph; @remark deleted
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small fixes: test @remark tag
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fixed pdf doxygen creation, in case of error in make call pdflatex direct
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continue review and cleanup doxygen: delete numbered subtitles
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continue review and cleanup doxygen: disable numeric lists
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continue review and cleanup doxygen: all obsolete notes removed
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continue review and cleanup doxygen: more obsolete notes removed
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continue review and cleanup doxygen: removed obsolete confusing notes on visual perception procedures
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continue review and cleanup doxygen, deleted obsolete ifort bug reports fom doxy
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continue review and cleanup doxygen
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implemented (do_this) for 'FREEZING' behaviour class, expected conspecifics removed
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forgotten omega weighting factor in doxy formula
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forward simulation debugged, now running and producing output
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fixed head info; added direct and general predation risk in 'FREEZE'
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continue review and cleanup doxygen
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continue review and cleanup doxygen
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continue review and cleanup doxygen
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more doxygen cleanups
14 lines of code changed in 1 file:
doxygen cleanup in commondata
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hgsubversion has broken some binary images, had to restore manually from svn repo
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updated properties
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deleted deprecated
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updated paths to doxy images to point to local subdir 'dox'
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copy modules scheme to hedg2
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get one image back
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moving
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moving
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moved image to hedg2_01
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Coded together. Added forward part.
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added ignore file
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ignore PDFs in hg repo
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minor changes on the forward loop
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first attempted to add forward loop structure
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additional notes on the integer-based gene
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minor bug fixes
9 lines of code changed in 1 file:
integrated vertical temp. profiles from function
39 lines of code changed in 1 file:
fix doxy link to (parse_svn_version)
3 lines of code changed in 1 file:
updated list added sergey ahaworkshop cloud pc
2 lines of code changed in 1 file:
Removed comments with old syntax and made the list with variable names easier to compare with that in the model.
40 lines of code changed in 1 file:
Gut capacity parameter updated to 3% from Giske and Aksnes 1992
1 lines of code changed in 1 file:
did init procedure for freezing
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svn revision number changed to revision id as mercurial is not numeric
1 lines of code changed in 1 file:
corrected depth loop, added comments to look trough together
79 lines of code changed in 1 file:
deleted SVN from logger outputs, hg and svn both can be used
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added more mercurial info on version hash
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added hidden descriptor from svn
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maintenance
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added hidden file descriptor
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Backed out changeset: 77b5ee5698b4
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added bitbucket info on versio id
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added bitbucket mercurial repo info in the version information
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included hidden file descriptor
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deleted changelog, boring to maintain, not essential; test transition to Mercurial, hgsubversion push
0 lines of code changed in 1 file:
deleted svn-autogenerated changelog, maintenance involves some cost, also test hgsubversion push on newly imported repo
0 lines of code changed in 1 file:
merged latest doc additions from HEDG02
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small updated comments on freezing
5 lines of code changed in 1 file:
added parameter is_freezing to all predation risk frontends
48 lines of code changed in 1 file:
New figures forward simulation (2)
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New figures forward simulation
0 lines of code changed in 1 file:
0 lines of code changed in 1 file:
small fix
2 lines of code changed in 1 file:
added htintrpl instruction to generate plots
9 lines of code changed in 1 file:
updated plot
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implemented probability of predator capture of freezing/immobile agent
155 lines of code changed in 1 file:
added plots for probability of capture of freezing/immobile agent
0 lines of code changed in 2 files:
added short descriptions to motivation components 'PERCEPT_COMPONENTS_MOTIV'
21 lines of code changed in 1 file:
deleted old obsolete branch. the latest work has been done an year ago.
On 02/13/2017 04:05 PM, Sergey Budaev wrote:
> Camilla and Jacqueline,
>
> There are your old branches in */branches/camilla/hormones/* and
> */branches/jacqueline/hormones/* . It seems all the work is now done in
> *hormones_v2 *and branches therein.
>
> _Do you need the old v1 branches?_ I was thinking about *deleting the v1
> branches* to avoid clutter. But please note that nothing can be actually
> deleted from Subversion, so they are not deleted actually, just won't
> appear in checkouts and updates and be deleted from your disk if you
> keep a copy of your whole repository. They can be easily reverted if
> required.
>
> Regards,
>
> Sergey
>
0 lines of code changed in 57 files:
deleted work branch developing 'pred_direct', direct predation component in the 'PERCEPT_COMPONENTS_MOTIV' class
0 lines of code changed in 1 file:
merged work branch developing 'pred_direct', direct predation component in the 'PERCEPT_COMPONENTS_MOTIV' class, updated all neurobiology accordingly, tested
386 lines of code changed in 1 file:
stage 3: fixed boolean genotype x phenotype values for pred_direct followers (6+ each chromosome)
48 lines of code changed in 1 file:
Minor changes.
3 lines of code changed in 2 files:
Added plotting for forward simulation.
49 lines of code changed in 1 file:
stage 2: did checks for pred_dir, direct predation perception component is now implemented throughout. increased predation 100,1000 to 1000,8000; logging capture probability for predator and food items discernible log messages
7 lines of code changed in 1 file:
Changed some comments and made them easier to understand.
6 lines of code changed in 1 file:
implemented wrapper (predation_capture_probability_risk_wrapper) for use in neuronal response wrapper
29 lines of code changed in 1 file:
fixed paameter 'param_gene_label_pred_dir'
4 lines of code changed in 1 file:
did parameter 'param_gerror_cv_pred_dir'
20 lines of code changed in 1 file:
fixed parameters 'param_gp_matrix_pred_dir'
20 lines of code changed in 1 file:
added boolean genotype matrices for PRED_DIR; weights 'weight_pred_dir'
156 lines of code changed in 1 file:
fix non-overriden init_val
3 lines of code changed in 1 file:
stage 1: added component %pred_dir to all objects %predator, weights added in neuronal response function
0 lines of code changed in 2 files:
fixed link to risk_fish() in doxygen
4 lines of code changed in 1 file:
added example call
6 lines of code changed in 1 file:
implemented (risk_pred) method class PERCEPTION, generic accepts PREDATOR class objects or spatial object components (for subjective assessment), refactored completely, deleted select type - based code as dangerous (optional parameters can not be provided). Many other changes renamed predator_attack_efficiency_cv, predator attack rate and body size check and limit sane ranges, objective minimum probability of agent's capture now non-zero, defined by PREDATOR_ATTACK_CAPTURE_PROBABILITY_MIN (subjective still zero).
178 lines of code changed in 1 file:
fixed mixed numeric+character data output in (habitat_save_predators_csv)
18 lines of code changed in 1 file:
save predators in (init_environment_objects)
5 lines of code changed in 1 file:
implemented (save_predators_csv) for predators; debug code at 25641,17
51 lines of code changed in 1 file:
named params in (predator_capture_probability_calculate)
4 lines of code changed in 1 file:
named parameters in (predator_capture_probability_calculate)
5 lines of code changed in 1 file:
cleanup memory optional in (perception_objects_destroy)
7 lines of code changed in 1 file:
done (destroy_perceptions); redeclared all destroy methods elemental
38 lines of code changed in 1 file:
Added some comments.
1 lines of code changed in 1 file:
Added some new comments.
9 lines of code changed in 1 file:
Started coding plots for the forward function, but it is far from finished.
91 lines of code changed in 1 file:
Added function for calculating a random integer
36 lines of code changed in 1 file:
Cleaned up and made sure the code is running after we coded together.
45 lines of code changed in 1 file:
added predator attack rate into perception, not tested well so far; debug code
112 lines of code changed in 1 file:
Coded together. Added environmnetal stochasticity to forward part.
52 lines of code changed in 1 file:
Removed unused line
1 lines of code changed in 1 file:
Minor changes
166 lines of code changed in 1 file:
fix wrong labels in doc
3 lines of code changed in 1 file:
(predator_capture_probability_calculate) gets predator as class SPATIAL now, with additional mandatory dummy parameters
46 lines of code changed in 1 file:
Coded together. Fixed array problem with z_opt in optimization.
9 lines of code changed in 1 file:
Minor changes to comments.
179 lines of code changed in 1 file:
adapted depth loop to run over depth increments >1m
41 lines of code changed in 1 file:
modified to allow model resolution in increment <1, for days and latitudes
27 lines of code changed in 1 file:
module containing function to save .bin light file for matlab analysis
5 lines of code changed in 1 file:
modified to allow model resolution in increment <1, for days and latitudes
87 lines of code changed in 1 file:
fex link
2 lines of code changed in 1 file:
added doc for interface
5 lines of code changed in 1 file:
another small fix
1 lines of code changed in 1 file:
deleted all optional parameters from the example call
1 lines of code changed in 1 file:
more clear reference to the attack rate
3 lines of code changed in 1 file:
fix wrong module name in ref
3 lines of code changed in 1 file:
micro fix
2 lines of code changed in 1 file:
added usage notes for backend and frontend predation risk procs
23 lines of code changed in 1 file:
converted to formulas in (predator_capture_risk_calculate_fish)
3 lines of code changed in 1 file:
added more description and scheme in the backend (predator_capture_risk_calculate_fish)
8 lines of code changed in 1 file:
added picture illustrating visual ranges for the predator and prey
0 lines of code changed in 3 files:
added to doc on (predator_capture_risk_calculate_fish)
6 lines of code changed in 1 file:
(risk_pred) moved to perception to be able to check (has_pred) method
71 lines of code changed in 1 file:
did initial (predator_capture_probability_calculate), should move to perception layer yet
76 lines of code changed in 1 file:
Minor changes
166 lines of code changed in 1 file:
Added timer for runtime.
177 lines of code changed in 1 file:
Removed comments from forward simulation. NOTE! This version will not run unless you comment out the code for the forward simulation.
167 lines of code changed in 2 files:
merged latest changes
9433 lines of code changed in 7 files:
fixed doxygen docs for (risk_fish); fixed refs to 'Global_Time_Step_Model_Current' global
16 lines of code changed in 1 file:
(predator_capture_risk_calculate_fish) implemented, predato-bound
81 lines of code changed in 1 file:
added predator capture interpolation curve
2218 lines of code changed in 2 files:
moved (length2sidearea_fish) to commondata; initial skeleton for (predator_capture_risk_calculate_fish)
101 lines of code changed in 1 file:
further fixing predator get_attack_rate renames of accessors
9 lines of code changed in 1 file:
renamed 'capture_efficiency' to 'attack_rate' in predator object
24 lines of code changed in 1 file:
started (do_this) for FREEZE
21 lines of code changed in 1 file:
Minor changes.
170 lines of code changed in 1 file:
Added posibility to plot one plot for every environment for strategies and fitness, to be used for making gifs.
125 lines of code changed in 1 file:
fix wrong tag
1 lines of code changed in 1 file:
better documented interface for (neuro_resp)
2 lines of code changed in 1 file:
added small usage outlook for gamma2gene doxygen
4 lines of code changed in 1 file:
Coded together. Minor changes.
2 lines of code changed in 1 file:
Coded together. Added bioenergetics, optimization.
47 lines of code changed in 1 file:
refactor MOVE base class, deleted speed, distance is the main data component now, collapsed up/down to conform MOVE standard, 'step_depth' unified to common 'distance'
22 lines of code changed in 1 file:
Removed conversion_efficency and environmental_scaling as they are no longer in use.
2 lines of code changed in 1 file:
Added environmental dimension to the strategy, fitness and fitnessconsequences arrays. Removed variables that are no longer in use and added new variables to reflect the changes in functions.f90 and new code from last commit.
68 lines of code changed in 1 file:
Fixed autocorrelated() to run properly, was stuck in do while loop after last commit.
10 lines of code changed in 1 file:
Added posibility to write 5D integer arrays and 4D real arrays to binary files.
57 lines of code changed in 1 file:
rename maxdepth for transparency
3 lines of code changed in 1 file:
fix link to environment not spatial
8 lines of code changed in 1 file:
code cleaned up
1 lines of code changed in 1 file:
bioenergetics parametrized after Hewett and Johnson 1992
46 lines of code changed in 1 file:
cleaned up code, bugs fixed, added units as comments, first attempt to include bioenergetic calculations
195 lines of code changed in 1 file:
cleaned up code, added units as comments
56 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
another small fix doc
2 lines of code changed in 1 file:
small fix doc
1 lines of code changed in 1 file:
further fix
1 lines of code changed in 1 file:
another small fix doc link
8 lines of code changed in 1 file:
small fix doc link
8 lines of code changed in 1 file:
small change
2 lines of code changed in 1 file:
change agent position in (execute)
14 lines of code changed in 1 file:
Plotting in R, currently just plots for variables under environment.
8 lines of code changed in 1 file:
Coded together. Added loops for environmental stochasticity and optimization in backwards routine.
25 lines of code changed in 1 file:
Coded together. Changed autocorrelation for conceptual clarity.
11 lines of code changed in 1 file:
implemented (go_up_do_execute), both up and down behaviours now ready
128 lines of code changed in 1 file:
check up/down step size pseudoisolated into block 'GET_MAXDEPTH'; implemented (execute) method for GO_DOWN_STEP
174 lines of code changed in 1 file:
fixed init for up (go_up_depth_init_zero) forgottent so far
4 lines of code changed in 1 file:
finally fixed the up and down procedures
12 lines of code changed in 1 file:
fixed (go_up_motivations_expect)
47 lines of code changed in 1 file:
Coded together. Generalized subroutine call for visual predation.
15 lines of code changed in 1 file:
Coded together. Generalized subroutine call for visual predation. Moved light-dependent calculations. Some other structural changes so that Tom can implement bioenergetics.
59 lines of code changed in 1 file:
change in predation loop
59 lines of code changed in 1 file:
sterted fixing (go_up_do_this)
22 lines of code changed in 1 file:
added doxygen formula
6 lines of code changed in 1 file:
shifted (depth_walk_default) upwards
27 lines of code changed in 1 file:
use now (depth_walk_default) in 'up'
4 lines of code changed in 1 file:
now use (depth_walk_default) in 'down'
5 lines of code changed in 1 file:
default up/down walk size now isolated into (depth_walk_default)
29 lines of code changed in 1 file:
reorder parameters for consistency in (go_down_motivations_expect)
10 lines of code changed in 1 file:
small changes in (go_down_motivations_expect)
15 lines of code changed in 1 file:
refactor for automatic maximum and minimum depth
54 lines of code changed in 1 file:
fixing minimum/maximum depth in do_this for move down, implemented functions (depth_min) and (depth_max) for environment objects, initial checks in (do_this)
57 lines of code changed in 1 file:
implemented identify function (find_environment)
51 lines of code changed in 1 file:
(go_up_motivations_expect) done
494 lines of code changed in 1 file:
done (go_up_do_this)
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done (go_down_motivations_expect): added motivation calcs after neuronal function
45 lines of code changed in 1 file:
add subtitle
1 lines of code changed in 1 file:
converted to list
19 lines of code changed in 1 file:
another small fix
1 lines of code changed in 1 file:
small fix doc
1 lines of code changed in 1 file:
another small fix doc
2 lines of code changed in 1 file:
another fix doc
3 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
fixed parameter descriptor
1 lines of code changed in 1 file:
fixed docs comments
30 lines of code changed in 1 file:
added interface (expectancies_calculate)
12 lines of code changed in 1 file:
fix comments
19 lines of code changed in 1 file:
continued (go_down_motivations_expect): added simple environmental perception overrides, inserted motivational expectancies by calling (motivation_components) method for all motivations
238 lines of code changed in 1 file:
small reformat
2 lines of code changed in 1 file:
refactor (go_down_motivations_expect) added fake perception of energy reserves
28 lines of code changed in 1 file:
fix (go_down_motivations_expect): use this%expected_food_gain and this%decrement_mass_cost
16 lines of code changed in 1 file:
cleanup doc
11 lines of code changed in 1 file:
continue (go_down_motivations_expect): expected mass and stomach increments weighted by capture probability; cleanyup titles in doxygen docs
12 lines of code changed in 1 file:
implemented preparatory steps for (go_down_motivations_expect); also did the reverse function (mass2size_food)
170 lines of code changed in 1 file:
Minor changes.
24 lines of code changed in 1 file:
Made the code more future proof, reproducible and flexible.
2 lines of code changed in 1 file:
(go_down_motivations_expect) header
13 lines of code changed in 1 file:
added more comments
13 lines of code changed in 1 file:
Fixed small mistake.
2 lines of code changed in 1 file:
Modified rnorm to use double precision, as a high precition from random numbers is not needed.
11 lines of code changed in 1 file:
Added alternative calculations for random number from normal distribution, modified from RNORM_R8 in HEDTOOLS BASE_RANDOM.f90
79 lines of code changed in 1 file:
comments added
5 lines of code changed in 1 file:
done (go_down_do_this), added parameters; clean up (cost_swim)
76 lines of code changed in 1 file:
minor change
2 lines of code changed in 1 file:
added to (go_down_do_this) and default step parameter
25 lines of code changed in 1 file:
input table for subroutine_visual_predation amended and parametrized with preliminary values
! work in progress, integrate use of units of energy (J and kJ) !
88 lines of code changed in 1 file:
BeamAtt, PreyHandlingTime, pc ,WW_DW_Cal, Cal_J_gWW, Cal_mgdw added to the input, subroutine now allows foraging output in units of energy (J)
47 lines of code changed in 1 file:
zero count results in MISSING value distance in all above/below distance perceptions
8 lines of code changed in 1 file:
return missing value of distance in food perception below/above procedures
10 lines of code changed in 1 file:
check for missing distance in (food_item_capture_probability_calc)
6 lines of code changed in 1 file:
another reformat
0 lines of code changed in 1 file:
reformat only
0 lines of code changed in 1 file:
done interfaces (pred_dist_below) and (pred_dist_above)
10 lines of code changed in 1 file:
added interfaces (consp_dist_below) and (consp_dist_above)
10 lines of code changed in 1 file:
fix length reformat for the nes procedures
4 lines of code changed in 1 file:
interfaces added (food_dist_below) and (food_dist_above)
8 lines of code changed in 1 file:
code width fix reformat
12 lines of code changed in 1 file:
done (perception_predator_dist_below_calculate) and (perception_predator_dist_above_calculate)
112 lines of code changed in 1 file:
done (perception_consp_dist_below_calculate) and (perception_consp_dist_above_calculate)
106 lines of code changed in 1 file:
small reformats and comments
4 lines of code changed in 1 file:
done (perception_food_dist_below_calculate) and (perception_food_dist_above_calculate)
122 lines of code changed in 1 file:
small format fix the_environment::
4 lines of code changed in 1 file:
additional data components in GO_DOWN_DEPTH class
10 lines of code changed in 1 file:
debug code small fix
1 lines of code changed in 1 file:
debug code, removed double spatial init
7 lines of code changed in 1 file:
debug code output to logger
5 lines of code changed in 1 file:
formatting only
2 lines of code changed in 1 file:
fix zero count in means, positional functions below/above for food items in PERCEPTION class; debug code change
44 lines of code changed in 1 file:
generic interfaces (pred_below) and (pred_above)
22 lines of code changed in 1 file:
done (perception_predator_below_horiz_calculate) and ( perception_predator_above_horiz_calculate)
83 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
interfaces (pred_below_all) and (pred_above_all)
11 lines of code changed in 1 file:
done (perception_predator_below_calculate) and (perception_predator_above_calculate)
78 lines of code changed in 1 file:
code width fix
8 lines of code changed in 1 file:
small reformat
2 lines of code changed in 1 file:
implemented consecifics below/above procedures (consp_below) and (consp_above)
107 lines of code changed in 1 file:
another small fix comments
2 lines of code changed in 1 file:
renamed number_below
4 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
done (perception_conspecifics_below_calculate) and (perception_conspecifics_above_calculate)
107 lines of code changed in 1 file:
doxygen fix in (has_food)
9 lines of code changed in 1 file:
debug code delete
0 lines of code changed in 1 file:
shift the position of the agent to the food item eaten in (behaviour_do_eat_food_item), cleanup doxygen comments inside too
26 lines of code changed in 1 file:
fix comment
3 lines of code changed in 1 file:
small fix doxygen
1 lines of code changed in 1 file:
(perception_predation_risk_objective) now uses the (predation_risk_backend)
40 lines of code changed in 1 file:
small reformat
2 lines of code changed in 1 file:
did (predation_risk_backend), not used so far
25 lines of code changed in 1 file:
(perception_predation_risk_objective) redeclared elemental
2 lines of code changed in 1 file:
debug code, agent positions to the eaten food items on consumption
13 lines of code changed in 1 file:
starting template for do_this for GO_DOWN_DEPTH class
13 lines of code changed in 1 file:
micro fix formatting
4 lines of code changed in 1 file:
addad implementation with user-defined operator, disabled so far
12 lines of code changed in 1 file:
another small addition to comments
9 lines of code changed in 1 file:
small chenge comments only
3 lines of code changed in 1 file:
user defined operator .within. for intrinsic types
72 lines of code changed in 1 file:
Removed ds that could affect the results of the equation when we use selected_real_kind. This also makes the model more flexible :)
18 lines of code changed in 1 file:
Removed ds that could affect the results of the equation when we use selected_real_kind.
1 lines of code changed in 1 file:
Fixed error in stocastic environment by adding a do loop.
4 lines of code changed in 1 file:
Added subroutine for writing 1D real arrays to binary.
28 lines of code changed in 1 file:
Fixed calculation error in the function for autocorrelation.
5 lines of code changed in 1 file:
Almost finished but some problems with calculating ProbOfE
14 lines of code changed in 1 file: