potential error correction for stomach transport T scale adjustment (`adjust stomach_transport`)
8 lines of code changed in 1 file:
implemented simple `adjust transport_pattern` command
TODO avoid multiple adjustments
3 lines of code changed in 1 file:
move command closer to similar commands
8 lines of code changed in 1 file:
(print_global_parameters) does not display adjusted stomach transport by default
22 lines of code changed in 1 file:
show comand for transport_pattern parameters in CMD mode
8 lines of code changed in 1 file:
dox: slightly better comments
2 lines of code changed in 1 file:
fix typo `transport_pattern_r`
5 lines of code changed in 1 file:
doc: added screenshot
6 lines of code changed in 2 files:
doc: small changes on output destination
3 lines of code changed in 2 files:
build webdoc before pdf manual in case pdflatex is buggy
1 lines of code changed in 1 file:
reset `output_dist` to current director so documentation plots are generated in the dox subdirectory as it should be and not affected by configuration file parameter or environment variable in the model
2 lines of code changed in 1 file:
code reformat only
6 lines of code changed in 1 file:
report `output_dest` in parameters overview
3 lines of code changed in 1 file:
set `output_dest` in CMD mode
24 lines of code changed in 1 file:
doc: document `output_dest` and `FFA_MODEL_OUTPUT_DEST`
38 lines of code changed in 3 files:
implemented environment variable `FFA_MODEL_OUTPUT_DEST` that sets destination directory or file prefix, report in CMD header info
34 lines of code changed in 4 files:
implement prefix destination directory set by `output_dest` parameter in CMD mode
90 lines of code changed in 4 files:
`output_dest` is the parameter to set global destination directory for plots and output data
especially needed for server-based calculations
35 lines of code changed in 3 files:
configuration for webdav
enable modules:
{{{
a2enmod ssl
a2enmod dav
a2enmod dav_fs
}}}
30 lines of code changed in 3 files:
default ssh daemon config
134 lines of code changed in 1 file:
move to correct dir
289 lines of code changed in 8 files:
default apache config
0 lines of code changed in 5 files:
starting config for fishmet server
3 lines of code changed in 1 file:
notes on iboss connector script
12 lines of code changed in 1 file:
doc: plantuml is dependency for docs
2 lines of code changed in 1 file:
needs a patched version of xmppy
2 lines of code changed in 1 file:
note on newer systems without python 2 pip
9 lines of code changed in 1 file:
doc: notes on DISLIN install on Linux
16 lines of code changed in 1 file:
doc: document how to fix dislin.mod error
{{{
Fatal Error: Cannot read module file ‘/usr/local/dislin/gf/real64/dislin.mod’
opened at (1), because it was created by a different version of GNU Fortran
compilation terminated.
}}}
43 lines of code changed in 2 files:
iobsolete file unused
0 lines of code changed in 1 file:
adapted backup scripts for TEGsvn v2 2022 Debian 10 new server
cron:
{{{
# m h dom mon dow command
4 2 * * * /home/debian/bin/dump_loc.tegsvn.sh mount
30 5 * * 5 /home/debian/bin/backup_trac.sh mount
}}}
9 lines of code changed in 3 files:
label case fix
1 lines of code changed in 1 file:
additional note
1 lines of code changed in 1 file:
upgrade notes for TEGsvn added
45 lines of code changed in 1 file:
switch to synchronous svn requests because hook didn't work so far, TODO: need fixing hooks, main image link leads to main wiki page not outside
3 lines of code changed in 1 file:
update ejabberd version path
3 lines of code changed in 1 file:
test hook again in sync mode
1 lines of code changed in 1 file:
check new hook
1 lines of code changed in 1 file:
get new version of hook from https://svn.edgewall.org/repos/trac/trunk/contrib/trac-svn-hook
82 lines of code changed in 1 file:
another test hook
1 lines of code changed in 1 file:
test hook
1 lines of code changed in 1 file:
icomments changed to check hook action works
3 lines of code changed in 1 file:
use systemwide path
1 lines of code changed in 1 file:
add comment only
2 lines of code changed in 1 file:
updated svn hook
235 lines of code changed in 2 files:
MAJOR: some new config files added on new TEGsvn server Debian 10
57 lines of code changed in 2 files:
iMAJOR: upgrade of the server configurations to new Debian 10 server
306 lines of code changed in 9 files:
small adjustments making presentation better for sending out
3588 lines of code changed in 1 file:
disable unneeded modules
4 lines of code changed in 1 file:
webadmin enable TLS
1 lines of code changed in 1 file:
need `https//` links for authenticated sites because http is also open in a separate root
2 lines of code changed in 1 file:
do not unmount backup partition if it was mounted before
13 lines of code changed in 2 files:
doc: small fixes
0 lines of code changed in 1 file:
doc: fixes
3 lines of code changed in 3 files:
doc: formatting
18 lines of code changed in 1 file:
doc: formatting
3 lines of code changed in 1 file:
doc: small fixes
3 lines of code changed in 1 file:
doc: add table of stomach emptying matrix
13 lines of code changed in 1 file:
doc: small fixes
7 lines of code changed in 2 files:
doc: small fixes
3 lines of code changed in 1 file:
doc: more fixes; forgotten new functionality
5 lines of code changed in 2 files:
doc: document adjustment of stomach transport matrix for fish body size and temperature
123 lines of code changed in 4 files:
report sdjusted stomach transport in both GUI and CMD mode
20 lines of code changed in 2 files:
report adjusted stomach transport with `show stomach_transport`
15 lines of code changed in 1 file:
(stomach_transport_txt) add optional fine formatting parameters
90 lines of code changed in 1 file:
(stomach_transport_adjusted_txt) to print adjusted stomach pattern arrays
35 lines of code changed in 1 file:
report shrink/stretch parameters in stomach pattern plot in CMD mode
33 lines of code changed in 1 file:
adjust stomach transit based on temperature and fish size, report shrink/stretch parameters in stomach pattern plot in GUI mode
47 lines of code changed in 2 files:
need root access due to works with later versions of rclone, here upgraded to 1.59
2 lines of code changed in 2 files:
(stomach_adjust) is better shorter name
8 lines of code changed in 1 file:
(fish_stomach_emptying_time) is an object frontend to (stomach_emptying_time)
29 lines of code changed in 1 file:
doxygen comments only
2 lines of code changed in 1 file:
optional arguments in (stomach_emptying_time)
16 lines of code changed in 1 file:
automatic target empty time in (stomach_pattern_adjust_factor_temp)
11 lines of code changed in 1 file:
target_emptying_time is integer
1 lines of code changed in 1 file:
(stomach_emptying_time) calculates raw emptying time integer
8 lines of code changed in 2 files:
reformat only
2 lines of code changed in 1 file:
report stomach emptying in GUI mode
29 lines of code changed in 1 file:
report stomach emptying data file problems
5 lines of code changed in 1 file:
get and process stomach emptying with error correction
34 lines of code changed in 2 files:
need cron commands for `crontab -l`
24 lines of code changed in 1 file:
no need to continue if backup failed and is unavailable
1 lines of code changed in 1 file:
find backup file and report success or error
5 lines of code changed in 1 file:
check backup file availability
7 lines of code changed in 1 file:
stop if backup location is not available
1 lines of code changed in 1 file:
report backup partition mount success or error
2 lines of code changed in 1 file:
integer converted
1 lines of code changed in 1 file:
move from sync.uib.no to OneDrive via rclone
11 lines of code changed in 2 files:
(get_stomach_emptying_matrix_csv) fills the data structure needs testing
8 lines of code changed in 1 file:
correct matrix is by rows, transpose
3 lines of code changed in 1 file:
move (get_stomach_emptying_matrix_csv) to `THE_FISH` because this is the parameter of the fish
30 lines of code changed in 2 files:
file structure in comment
11 lines of code changed in 1 file:
start stomach emptiying parameter matrix read from CSV file
25 lines of code changed in 3 files:
constant needed
3 lines of code changed in 1 file:
declared impure
1 lines of code changed in 1 file:
white spece format
0 lines of code changed in 1 file:
declared elemental function
1 lines of code changed in 1 file:
(check_stomach_transport_emptying_agree) checks if the stomach transport pattern from configuration agrees with stomach emptying time for specific temperature and fish mass
20 lines of code changed in 1 file:
(stomach_emptying_time) declared elemental
1 lines of code changed in 1 file:
defining is not needed
0 lines of code changed in 1 file:
added parameter `stomach_emptying_matrix` to set parameter
29 lines of code changed in 3 files:
`is_raw_s` parameter allows displaying raw parameter array in s
17 lines of code changed in 1 file:
rearrange comments
4 lines of code changed in 1 file:
(stomach_emptying_txt) shows stomach emptying parameter matrix
44 lines of code changed in 1 file:
fix default array order
10 lines of code changed in 1 file:
initial backend routines for stomach emptying time grid
29 lines of code changed in 2 files:
need new line for long examples
3 lines of code changed in 2 files:
document r12697 autodetect stomach transport
11 lines of code changed in 1 file:
white space in array definition only
11 lines of code changed in 1 file:
delete obsolete line
1 lines of code changed in 1 file:
`transport_pattern_t` can be provided in the config file in s or h, autodetect scale
25 lines of code changed in 2 files:
(stomach_emptying_def_default) is *pure*
3 lines of code changed in 1 file:
(stomach_emptying_def_default) better more logical place to `COMMONDATA`
37 lines of code changed in 2 files:
started to implement temperature-dependent stomach pattern and emptying
- basic parameters defined
- default stomach emptying data is defined (need to move to commondata)
- adjustment factor function done
124 lines of code changed in 4 files:
shorter second meet interval
{{{
z <- as.vector(0)
z[1:540] <- 0 # first 10 h (600 min) no food provided
z[541:571] <- 1 # 30 min first meal
z[572:812] <- 0 # 4 hours (240 min)
z[813:843] <- 1 # 30 min second meal
z[844:1300] <- 0 # no food is given later
write.csv(z, "food_exp2spr.csv") # save data to csv file
}}}
60 lines of code changed in 1 file:
earlier second meal
{{{
z <- as.vector(0)
z[1:540] <- 0 # first 10 h (600 min) no food provided
z[541:571] <- 1 # 30 min first meal
z[572:872] <- 0 # 5 hours (300 min)
z[873:903] <- 1 # 30 min second meal
z[904:1300] <- 0 # no food is given later
write.csv(z, "food_exp2spr.csv") # save data to csv file
}}}
60 lines of code changed in 1 file: