September 2022 Commit Log

Number of Commits:
116
Number of Active Developers:
1
sbu062 2022-09-23 14:25 Rev.: 12809

potential error correction for stomach transport T scale adjustment (`adjust stomach_transport`)

8 lines of code changed in 1 file:

sbu062 2022-09-23 14:00 Rev.: 12808

implemented simple `adjust transport_pattern` command
TODO avoid multiple adjustments

3 lines of code changed in 1 file:

sbu062 2022-09-23 13:47 Rev.: 12807

move command closer to similar commands

8 lines of code changed in 1 file:

sbu062 2022-09-23 13:39 Rev.: 12806

(print_global_parameters) does not display adjusted stomach transport by default

22 lines of code changed in 1 file:

sbu062 2022-09-23 13:30 Rev.: 12805

show comand for transport_pattern parameters in CMD mode

8 lines of code changed in 1 file:

sbu062 2022-09-23 13:10 Rev.: 12804

dox: slightly better comments

2 lines of code changed in 1 file:

sbu062 2022-09-23 13:08 Rev.: 12803

fix typo `transport_pattern_r`

5 lines of code changed in 1 file:

sbu062 2022-09-23 11:05 Rev.: 12802

doc: added screenshot

6 lines of code changed in 2 files:

sbu062 2022-09-23 08:57 Rev.: 12801

doc: small changes on output destination

3 lines of code changed in 2 files:

sbu062 2022-09-22 14:40 Rev.: 12800

build webdoc before pdf manual in case pdflatex is buggy

1 lines of code changed in 1 file:

sbu062 2022-09-22 14:34 Rev.: 12799

reset `output_dist` to current director so documentation plots are generated in the dox subdirectory as it should be and not affected by configuration file parameter or environment variable in the model

2 lines of code changed in 1 file:

sbu062 2022-09-22 14:28 Rev.: 12798

code reformat only

6 lines of code changed in 1 file:

sbu062 2022-09-22 14:21 Rev.: 12797

report `output_dest` in parameters overview

3 lines of code changed in 1 file:

sbu062 2022-09-22 14:14 Rev.: 12796

set `output_dest` in CMD mode

24 lines of code changed in 1 file:

sbu062 2022-09-22 13:42 Rev.: 12795

doc: document `output_dest` and `FFA_MODEL_OUTPUT_DEST`

38 lines of code changed in 3 files:

sbu062 2022-09-22 12:59 Rev.: 12794

implemented environment variable `FFA_MODEL_OUTPUT_DEST` that sets destination directory or file prefix, report in CMD header info

34 lines of code changed in 4 files:

sbu062 2022-09-22 12:29 Rev.: 12793

implement prefix destination directory set by `output_dest` parameter in CMD mode

90 lines of code changed in 4 files:

sbu062 2022-09-22 11:16 Rev.: 12792

`output_dest` is the parameter to set global destination directory for plots and output data
especially needed for server-based calculations

35 lines of code changed in 3 files:

sbu062 2022-09-22 10:09 Rev.: 12791

configuration for webdav
enable modules:
{{{
a2enmod ssl
a2enmod dav
a2enmod dav_fs
}}}

30 lines of code changed in 3 files:

sbu062 2022-09-21 12:57 Rev.: 12790

default ssh daemon config

134 lines of code changed in 1 file:

sbu062 2022-09-21 12:56 Rev.: 12789

move to correct dir

289 lines of code changed in 8 files:

sbu062 2022-09-21 12:55 Rev.: 12788

default apache config

0 lines of code changed in 5 files:

sbu062 2022-09-21 12:53 Rev.: 12787

starting config for fishmet server

3 lines of code changed in 1 file:

sbu062 2022-09-21 12:17 Rev.: 12786

notes on iboss connector script

12 lines of code changed in 1 file:

sbu062 2022-09-21 11:33 Rev.: 12785

doc: plantuml is dependency for docs

2 lines of code changed in 1 file:

sbu062 2022-09-20 12:33 Rev.: 12784

needs a patched version of xmppy

2 lines of code changed in 1 file:

sbu062 2022-09-20 11:51 Rev.: 12783

note on newer systems without python 2 pip

9 lines of code changed in 1 file:

sbu062 2022-09-20 11:35 Rev.: 12782

doc: notes on DISLIN install on Linux

16 lines of code changed in 1 file:

sbu062 2022-09-20 11:29 Rev.: 12781

doc: document how to fix dislin.mod error
{{{
Fatal Error: Cannot read module file ‘/usr/local/dislin/gf/real64/dislin.mod’
opened at (1), because it was created by a different version of GNU Fortran
compilation terminated.
}}}

43 lines of code changed in 2 files:

sbu062 2022-09-20 07:35 Rev.: 12780

iobsolete file unused

0 lines of code changed in 1 file:

sbu062 2022-09-20 07:32 Rev.: 12779

adapted backup scripts for TEGsvn v2 2022 Debian 10 new server
cron:
{{{
# m h dom mon dow command
4 2 * * * /home/debian/bin/dump_loc.tegsvn.sh mount
30 5 * * 5 /home/debian/bin/backup_trac.sh mount
}}}

9 lines of code changed in 3 files:

sbu062 2022-09-19 20:26 Rev.: 12778

label case fix

1 lines of code changed in 1 file:

sbu062 2022-09-19 14:40 Rev.: 12777

additional note

1 lines of code changed in 1 file:

sbu062 2022-09-19 14:22 Rev.: 12776

upgrade notes for TEGsvn added

45 lines of code changed in 1 file:

sbu062 2022-09-19 14:03 Rev.: 12775

switch to synchronous svn requests because hook didn't work so far, TODO: need fixing hooks, main image link leads to main wiki page not outside

3 lines of code changed in 1 file:

sbu062 2022-09-19 12:20 Rev.: 12774

update ejabberd version path

3 lines of code changed in 1 file:

sbu062 2022-09-19 12:09 Rev.: 12773

test hook again in sync mode

1 lines of code changed in 1 file:

sbu062 2022-09-19 12:01 Rev.: 12772

check new hook

1 lines of code changed in 1 file:

sbu062 2022-09-19 11:59 Rev.: 12771

get new version of hook from https://svn.edgewall.org/repos/trac/trunk/contrib/trac-svn-hook

82 lines of code changed in 1 file:

sbu062 2022-09-19 11:54 Rev.: 12770

another test hook

1 lines of code changed in 1 file:

sbu062 2022-09-19 11:50 Rev.: 12769

test hook

1 lines of code changed in 1 file:

sbu062 2022-09-19 11:43 Rev.: 12768

icomments changed to check hook action works

3 lines of code changed in 1 file:

sbu062 2022-09-19 11:31 Rev.: 12767

use systemwide path

1 lines of code changed in 1 file:

sbu062 2022-09-19 11:21 Rev.: 12766

add comment only

2 lines of code changed in 1 file:

sbu062 2022-09-19 11:17 Rev.: 12765

updated svn hook

235 lines of code changed in 2 files:

sbu062 2022-09-19 11:08 Rev.: 12764

MAJOR: some new config files added on new TEGsvn server Debian 10

57 lines of code changed in 2 files:

sbu062 2022-09-19 11:07 Rev.: 12763

iMAJOR: upgrade of the server configurations to new Debian 10 server

306 lines of code changed in 9 files:

sbu062 2022-09-18 09:43 Rev.: 12762

small adjustments making presentation better for sending out

3588 lines of code changed in 1 file:

sbu062 2022-09-17 17:56 Rev.: 12761

disable unneeded modules

4 lines of code changed in 1 file:

sbu062 2022-09-17 16:53 Rev.: 12760

webadmin enable TLS

1 lines of code changed in 1 file:

sbu062 2022-09-17 08:43 Rev.: 12759

need `https//` links for authenticated sites because http is also open in a separate root

2 lines of code changed in 1 file:

sbu062 2022-09-14 17:44 Rev.: 12758

do not unmount backup partition if it was mounted before

13 lines of code changed in 2 files:

sbu062 2022-09-14 14:38 Rev.: 12757

doc: small fixes

0 lines of code changed in 1 file:

sbu062 2022-09-14 14:28

doc: fixes

3 lines of code changed in 3 files:

sbu062 2022-09-14 14:25 Rev.: 12754

doc: formatting

18 lines of code changed in 1 file:

sbu062 2022-09-14 14:09 Rev.: 12753

doc: formatting

3 lines of code changed in 1 file:

sbu062 2022-09-14 14:08 Rev.: 12752

doc: small fixes

3 lines of code changed in 1 file:

sbu062 2022-09-14 14:07 Rev.: 12751

doc: add table of stomach emptying matrix

13 lines of code changed in 1 file:

sbu062 2022-09-14 13:49

doc: small fixes

7 lines of code changed in 2 files:

sbu062 2022-09-14 13:44 Rev.: 12748

doc: small fixes

3 lines of code changed in 1 file:

sbu062 2022-09-14 13:35 Rev.: 12747

doc: more fixes; forgotten new functionality

5 lines of code changed in 2 files:

sbu062 2022-09-14 13:14 Rev.: 12746

doc: document adjustment of stomach transport matrix for fish body size and temperature

123 lines of code changed in 4 files:

sbu062 2022-09-14 11:33 Rev.: 12745

report sdjusted stomach transport in both GUI and CMD mode

20 lines of code changed in 2 files:

sbu062 2022-09-14 11:13 Rev.: 12744

report adjusted stomach transport with `show stomach_transport`

15 lines of code changed in 1 file:

sbu062 2022-09-12 21:22 Rev.: 12743

(stomach_transport_txt) add optional fine formatting parameters

90 lines of code changed in 1 file:

sbu062 2022-09-12 20:17 Rev.: 12742

(stomach_transport_adjusted_txt) to print adjusted stomach pattern arrays

35 lines of code changed in 1 file:

sbu062 2022-09-10 15:13 Rev.: 12741

report shrink/stretch parameters in stomach pattern plot in CMD mode

33 lines of code changed in 1 file:

sbu062 2022-09-10 14:42 Rev.: 12740

adjust stomach transit based on temperature and fish size, report shrink/stretch parameters in stomach pattern plot in GUI mode

47 lines of code changed in 2 files:

sbu062 2022-09-10 06:56 Rev.: 12739

need root access due to works with later versions of rclone, here upgraded to 1.59

2 lines of code changed in 2 files:

sbu062 2022-09-09 11:17 Rev.: 12738

(stomach_adjust) is better shorter name

8 lines of code changed in 1 file:

sbu062 2022-09-09 11:10 Rev.: 12737

(fish_stomach_emptying_time) is an object frontend to (stomach_emptying_time)

29 lines of code changed in 1 file:

sbu062 2022-09-08 23:09 Rev.: 12736

doxygen comments only

2 lines of code changed in 1 file:

sbu062 2022-09-08 15:32 Rev.: 12735

optional arguments in (stomach_emptying_time)

16 lines of code changed in 1 file:

sbu062 2022-09-08 15:06 Rev.: 12734

automatic target empty time in (stomach_pattern_adjust_factor_temp)

11 lines of code changed in 1 file:

sbu062 2022-09-08 14:59 Rev.: 12733

target_emptying_time is integer

1 lines of code changed in 1 file:

sbu062 2022-09-08 14:55 Rev.: 12732

(stomach_emptying_time) calculates raw emptying time integer

8 lines of code changed in 2 files:

sbu062 2022-09-08 14:39 Rev.: 12731

reformat only

2 lines of code changed in 1 file:

sbu062 2022-09-08 14:12 Rev.: 12730

report stomach emptying in GUI mode

29 lines of code changed in 1 file:

sbu062 2022-09-08 13:57 Rev.: 12729

report stomach emptying data file problems

5 lines of code changed in 1 file:

sbu062 2022-09-08 13:13 Rev.: 12728

get and process stomach emptying with error correction

34 lines of code changed in 2 files:

sbu062 2022-09-08 00:44 Rev.: 12727

need cron commands for `crontab -l`

24 lines of code changed in 1 file:

sbu062 2022-09-08 00:42 Rev.: 12726

no need to continue if backup failed and is unavailable

1 lines of code changed in 1 file:

sbu062 2022-09-08 00:40 Rev.: 12725

find backup file and report success or error

5 lines of code changed in 1 file:

sbu062 2022-09-08 00:33 Rev.: 12724

check backup file availability

7 lines of code changed in 1 file:

sbu062 2022-09-08 00:27 Rev.: 12723

stop if backup location is not available

1 lines of code changed in 1 file:

sbu062 2022-09-08 00:20 Rev.: 12722

report backup partition mount success or error

2 lines of code changed in 1 file:

sbu062 2022-09-07 15:29 Rev.: 12721

integer converted

1 lines of code changed in 1 file:

sbu062 2022-09-07 15:12 Rev.: 12720

move from sync.uib.no to OneDrive via rclone

11 lines of code changed in 2 files:

sbu062 2022-09-07 06:00 Rev.: 12719

(get_stomach_emptying_matrix_csv) fills the data structure needs testing

8 lines of code changed in 1 file:

sbu062 2022-09-07 05:46 Rev.: 12718

correct matrix is by rows, transpose

3 lines of code changed in 1 file:

sbu062 2022-09-06 21:21 Rev.: 12717

move (get_stomach_emptying_matrix_csv) to `THE_FISH` because this is the parameter of the fish

30 lines of code changed in 2 files:

sbu062 2022-09-06 21:08 Rev.: 12716

file structure in comment

11 lines of code changed in 1 file:

sbu062 2022-09-06 21:04 Rev.: 12715

start stomach emptiying parameter matrix read from CSV file

25 lines of code changed in 3 files:

sbu062 2022-09-06 20:39 Rev.: 12714

constant needed

3 lines of code changed in 1 file:

sbu062 2022-09-06 18:47 Rev.: 12713

declared impure

1 lines of code changed in 1 file:

sbu062 2022-09-06 18:43 Rev.: 12712

white spece format

0 lines of code changed in 1 file:

sbu062 2022-09-06 18:42 Rev.: 12711

declared elemental function

1 lines of code changed in 1 file:

sbu062 2022-09-06 18:41 Rev.: 12710

(check_stomach_transport_emptying_agree) checks if the stomach transport pattern from configuration agrees with stomach emptying time for specific temperature and fish mass

20 lines of code changed in 1 file:

sbu062 2022-09-06 18:39 Rev.: 12709

(stomach_emptying_time) declared elemental

1 lines of code changed in 1 file:

sbu062 2022-09-06 17:50 Rev.: 12708

defining is not needed

0 lines of code changed in 1 file:

sbu062 2022-09-06 17:49 Rev.: 12707

added parameter `stomach_emptying_matrix` to set parameter

29 lines of code changed in 3 files:

sbu062 2022-09-06 17:17 Rev.: 12706

`is_raw_s` parameter allows displaying raw parameter array in s

17 lines of code changed in 1 file:

sbu062 2022-09-06 17:06 Rev.: 12705

rearrange comments

4 lines of code changed in 1 file:

sbu062 2022-09-06 17:03 Rev.: 12704

(stomach_emptying_txt) shows stomach emptying parameter matrix

44 lines of code changed in 1 file:

sbu062 2022-09-06 14:22 Rev.: 12703

fix default array order

10 lines of code changed in 1 file:

sbu062 2022-09-06 11:58 Rev.: 12702

initial backend routines for stomach emptying time grid

29 lines of code changed in 2 files:

sbu062 2022-09-06 07:52 Rev.: 12701

need new line for long examples

3 lines of code changed in 2 files:

sbu062 2022-09-06 06:47 Rev.: 12700

document r12697 autodetect stomach transport

11 lines of code changed in 1 file:

sbu062 2022-09-05 21:01 Rev.: 12699

white space in array definition only

11 lines of code changed in 1 file:

sbu062 2022-09-05 17:53 Rev.: 12698

delete obsolete line

1 lines of code changed in 1 file:

sbu062 2022-09-05 17:51 Rev.: 12697

`transport_pattern_t` can be provided in the config file in s or h, autodetect scale

25 lines of code changed in 2 files:

sbu062 2022-09-05 16:49 Rev.: 12696

(stomach_emptying_def_default) is *pure*

3 lines of code changed in 1 file:

sbu062 2022-09-05 16:44 Rev.: 12695

(stomach_emptying_def_default) better more logical place to `COMMONDATA`

37 lines of code changed in 2 files:

sbu062 2022-09-05 14:10 Rev.: 12694

started to implement temperature-dependent stomach pattern and emptying
- basic parameters defined
- default stomach emptying data is defined (need to move to commondata)
- adjustment factor function done

124 lines of code changed in 4 files:

sbu062 2022-09-01 08:29 Rev.: 12693

shorter second meet interval
{{{
z <- as.vector(0)
z[1:540] <- 0 # first 10 h (600 min) no food provided
z[541:571] <- 1 # 30 min first meal
z[572:812] <- 0 # 4 hours (240 min)
z[813:843] <- 1 # 30 min second meal
z[844:1300] <- 0 # no food is given later
write.csv(z, "food_exp2spr.csv") # save data to csv file
}}}

60 lines of code changed in 1 file:

sbu062 2022-09-01 08:18 Rev.: 12692

earlier second meal
{{{
z <- as.vector(0)
z[1:540] <- 0 # first 10 h (600 min) no food provided
z[541:571] <- 1 # 30 min first meal
z[572:872] <- 0 # 5 hours (300 min)
z[873:903] <- 1 # 30 min second meal
z[904:1300] <- 0 # no food is given later
write.csv(z, "food_exp2spr.csv") # save data to csv file
}}}

60 lines of code changed in 1 file:

August 2022 »

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