October 2019 Commit Log

Number of Commits:
149
Number of Active Developers:
7
sbu062 2019-10-31 14:05 Rev.: 8810

v2.7, further small corrections from r8808

8 lines of code changed in 1 file:

sbu062 2019-10-31 13:49 Rev.: 8809

v2.7, integrated JS's paper-welfare-v2.6_jg-2.docx r8808

20 lines of code changed in 2 files:

sbu062 2019-10-31 13:42 Rev.: 8808

v2.6, JG deletions from paper-welfare-v2.6_jg-1.docx

18 lines of code changed in 2 files:

sbu062 2019-10-29 22:40 Rev.: 8807

v2.6: fix typo

2 lines of code changed in 1 file:

sbu062 2019-10-29 22:35 Rev.: 8806

v2.6: reverted to r8804, r8805 is for comparison and control
- `svn merge -r HEAD:8804 .`

68 lines of code changed in 2 files:

sbu062 2019-10-29 22:32 Rev.: 8805

v2.5: Jarl's comments and changes, from file paper-welfare-v2.5_jarl-1.docx

130 lines of code changed in 2 files:

sbu062 2019-10-29 22:24 Rev.: 8804

v2.6, deleted challenges, now we have expectations from the architecture; this version is distributed to coauthors

8 lines of code changed in 1 file:

sbu062 2019-10-29 14:48 Rev.: 8803

v2.6: ref fixed

2 lines of code changed in 1 file:

sbu062 2019-10-29 14:44 Rev.: 8802

v2.6: fitted in JG paper-welfare-v2.5_jarl.docx

78 lines of code changed in 2 files:

sbu062 2019-10-25 19:02 Rev.: 8801

v2.5: small wording changes

8 lines of code changed in 1 file:

nzlcj 2019-10-25 14:05 Rev.: 8800

Coded together, added simple individual energetics.

50 lines of code changed in 2 files:

sbu062 2019-10-25 13:38 Rev.: 8799

v2.5: did model predictions and digital twin, refs reformated for appl. anim. behav. sci.

455 lines of code changed in 1 file:

lhi088 2019-10-25 12:18 Rev.: 8798

small edits

49 lines of code changed in 2 files:

nzlcj 2019-10-24 12:42 Rev.: 8797

Coded together, also with Agnes. Added autocorrelated environment.

19 lines of code changed in 2 files:

lhi088 2019-10-24 11:02 Rev.: 8796

small edits

85 lines of code changed in 2 files:

sbu062 2019-10-23 12:20 Rev.: 8795

v2.5: started to edit model predictions

15 lines of code changed in 1 file:

sbu062 2019-10-22 13:10 Rev.: 8794

v2.5: responded on consciousness part, pasted JG predictions

32 lines of code changed in 1 file:

sbu062 2019-10-21 22:19 Rev.: 8793

v2.5: JG's fixes from the next portion (before last predictions) + further small changes

20 lines of code changed in 1 file:

sbu062 2019-10-21 12:43 Rev.: 8792

v2.5: incorporated comments and changes from Jarl and Sigrunn
- paper-welfare-v2.4 jg (002).docx

55 lines of code changed in 2 files:

hje044 2019-10-18 10:22 Rev.: 8791

Deleted old files

21 lines of code changed in 33 files:

sbu062 2019-10-17 13:11 Rev.: 8790

fixed the test program, HEDTOOLS are not needed any more

6 lines of code changed in 8 files:

sbu062 2019-10-17 13:00 Rev.: 8789

GUI plotting now makes use of global parameters

8 lines of code changed in 2 files:

sbu062 2019-10-17 12:46 Rev.: 8788

added modified benchmark for qsort

10 lines of code changed in 15 files:

nzlcj 2019-10-17 09:35 Rev.: 8787

Coded together, added step function.

16 lines of code changed in 1 file:

nzlcj 2019-10-17 09:31 Rev.: 8786

Coded together, added step function in environment.

17 lines of code changed in 1 file:

sbu062 2019-10-17 09:17 Rev.: 8785

(rate2int) is a better name

6 lines of code changed in 4 files:

lhi088 2019-10-17 08:26 Rev.: 8784

I commented the code out

6 lines of code changed in 2 files:

sbu062 2019-10-17 07:25 Rev.: 8783

(each_n_s) is a time rate conversion function

32 lines of code changed in 4 files:

sbu062 2019-10-16 13:44 Rev.: 8782

adapted food transport cycle to approximately 4 h

4 lines of code changed in 1 file:

sbu062 2019-10-16 13:43 Rev.: 8781

tolerance is increased so far

1 lines of code changed in 1 file:

sbu062 2019-10-16 13:14 Rev.: 8780

report time interval between succeeding food items

8 lines of code changed in 2 files:

sbu062 2019-10-16 12:48 Rev.: 8779

use `Global_Food_Input_Rate` parameter (with recalc to "every 6 second")

4 lines of code changed in 2 files:

sbu062 2019-10-16 12:46 Rev.: 8778

tolerance is higher for better agreement with experimental resolution

3 lines of code changed in 1 file:

sbu062 2019-10-16 12:44 Rev.: 8777

basic parameters agreed with Ivar

11 lines of code changed in 1 file:

sbu062 2019-10-16 10:21 Rev.: 8776

parametrized argument for higher readability

1 lines of code changed in 1 file:

sbu062 2019-10-15 12:52 Rev.: 8775

calculate evacuation time in (check_disappear)

8 lines of code changed in 1 file:

sbu062 2019-10-15 11:11 Rev.: 8774

documented public interfaces for fish and environment objects

28 lines of code changed in 2 files:

sbu062 2019-10-15 07:50 Rev.: 8773

merge r8772 destination dir and move macro

2 lines of code changed in 1 file:

sbu062 2019-10-15 07:42 Rev.: 8772

use destination dir option for `a2x` and use mv macro (forgotten)

2 lines of code changed in 1 file:

sbu062 2019-10-14 09:40 Rev.: 8771

(schedule) method for food items added target_value for arbitrary scheduling, e.g. based on appetite (for testing)

21 lines of code changed in 2 files:

lhi088 2019-10-13 14:10 Rev.: 8770

tidied up code
added environments

82 lines of code changed in 2 files:

sbu062 2019-10-11 19:18 Rev.: 8769

web: typo

1 lines of code changed in 1 file:

sbu062 2019-10-11 19:16 Rev.: 8768

web: add tar.gz archive with sources for direct download

3 lines of code changed in 1 file:

server 2019-10-11 19:06 Rev.: 8767

web: configure letsencrypt ssl certificates, automatically with default certbot. No redirection http to https

61 lines of code changed in 2 files:

server 2019-10-11 19:04 Rev.: 8766

web: switch to gum theme, it works better with mobile clients

1 lines of code changed in 1 file:

sbu062 2019-10-11 14:45 Rev.: 8765

comments only

2 lines of code changed in 2 files:

sbu062 2019-10-11 14:29 Rev.: 8764

schedule food is now type-bound (schedule), moved to ENVIRON module
- build and test ok

38 lines of code changed in 2 files:

sbu062 2019-10-11 14:18 Rev.: 8763

collapse feed provision function

4 lines of code changed in 1 file:

sbu062 2019-10-11 14:17 Rev.: 8762

impure explicitly declared

4 lines of code changed in 1 file:

sbu062 2019-10-11 13:59 Rev.: 8761

use indicator from (schedule_feed)

2 lines of code changed in 1 file:

sbu062 2019-10-11 13:51 Rev.: 8760

pointer-based feed scheduler (schedule_feed) and simplistic appetite-based decision procedure (decide_eat)

114 lines of code changed in 3 files:

cje012 2019-10-11 11:26 Rev.: 8759

Added forward only model version for experiments where one can change both parasite expoitation rate and food availiability, while switching between several optimalisation tables.

518 lines of code changed in 1 file:

cje012 2019-10-11 11:23 Rev.: 8758

Updated to also include runpve to run model forward only with differeing parasite virulence and food availiability.

29 lines of code changed in 1 file:

sbu062 2019-10-11 09:01 Rev.: 8757

disable test condition for feed, back to r8755
- `svn merge -r HEAD:8755 .`

1 lines of code changed in 1 file:

sbu062 2019-10-11 08:59 Rev.: 8756

another complex feed provision condition for test simulation

3 lines of code changed in 1 file:

sbu062 2019-10-11 08:57 Rev.: 8755

add counter for waste feed, test simulation

9 lines of code changed in 1 file:

sbu062 2019-10-11 08:26 Rev.: 8754

rename (ingest) method to (do_ingest), may need a separate method for decision to ingest

2 lines of code changed in 2 files:

sbu062 2019-10-10 15:12 Rev.: 8753

small changes for readability of test code

3 lines of code changed in 1 file:

nzlcj 2019-10-10 14:25

From our first coding session together on the new model.

42 lines of code changed in 2 files:

sbu062 2019-10-10 11:46 Rev.: 8749

testing fractional smulations

24 lines of code changed in 1 file:

sbu062 2019-10-10 11:46 Rev.: 8748

long integer for time steps

3 lines of code changed in 1 file:

sbu062 2019-10-10 09:04 Rev.: 8747

enable generate doxygen output in RFT, pdflatex makefile seems broken in new versions

1 lines of code changed in 1 file:

sbu062 2019-10-10 08:30 Rev.: 8746

web: smaller pic

9 lines of code changed in 1 file:

sbu062 2019-10-10 08:27 Rev.: 8745

web: add pic

933 lines of code changed in 2 files:

sbu062 2019-10-10 08:26 Rev.: 8744

web: fix install script

8 lines of code changed in 1 file:

server 2019-10-10 08:16 Rev.: 8743

web: static contents tag not needed, breaks pictures

14 lines of code changed in 4 files:

server 2019-10-10 07:54 Rev.: 8742

web: links to ahamodel.uib.no must be relative all

17 lines of code changed in 6 files:

sbu062 2019-10-09 23:43 Rev.: 8741

web: crontab entries fix

6 lines of code changed in 1 file:

sbu062 2019-10-09 23:37 Rev.: 8740

update install script for ubuntu 18 LTS (rebuilt from 19.0)

10 lines of code changed in 1 file:

server 2019-10-09 20:50 Rev.: 8739

web: use relative links for portrability

18 lines of code changed in 2 files:

sbu062 2019-10-09 14:35 Rev.: 8738

web: fix paths for crontab, ubuntu-based AHAWEB

3 lines of code changed in 1 file:

server 2019-10-09 14:33 Rev.: 8737

web: point to all plugins

1 lines of code changed in 1 file:

sbu062 2019-10-09 13:53 Rev.: 8736

web: adapted scripts for new ubuntu-based AHAWEB

0 lines of code changed in 2 files:

server 2019-10-09 13:51 Rev.: 8735

web: adapted scripts to new ubuntu-based AHAWEB

9 lines of code changed in 4 files:

server 2019-10-09 13:50 Rev.: 8734

web: switch config to pelican 4.0.1 on new ubuntu-based AHAWEB

18 lines of code changed in 10 files:

server 2019-10-09 13:43 Rev.: 8733

deleted outdated binary

0 lines of code changed in 1 file:

cje012 2019-10-08 08:41 Rev.: 8732

Minor change

1 lines of code changed in 1 file:

cje012 2019-10-08 08:39 Rev.: 8731

Fixed bug in figure B and edited x-axis title on FigureF.

5 lines of code changed in 1 file:

sbu062 2019-10-07 14:23 Rev.: 8730

comment only

1 lines of code changed in 1 file:

sbu062 2019-10-07 14:12 Rev.: 8729

(test_run) now uses probabilistic ingestion depending on appetite factor

6 lines of code changed in 1 file:

sbu062 2019-10-07 13:30 Rev.: 8728

added BASE_RANDOM from HEDTOOLS but substituted non-portable (RANDOM_SEED_INIT) with simple non-parallel version

1606 lines of code changed in 2 files:

cje012 2019-10-07 13:13 Rev.: 8727

Added unit to Fultons condition factor in Figure A.

1 lines of code changed in 1 file:

tla051 2019-10-07 11:48 Rev.: 8726

depth loop added

16 lines of code changed in 2 files:

tla051 2019-10-07 10:51 Rev.: 8725

minor changes - but why does zooplankton size not affect survival rates?

212 lines of code changed in 2 files:

sbu062 2019-10-04 20:47 Rev.: 8724

deleted confusing comment

1 lines of code changed in 1 file:

sbu062 2019-10-04 20:31 Rev.: 8723

better name

3 lines of code changed in 1 file:

sbu062 2019-10-04 19:42 Rev.: 8722

debug code, cryptic assignment error in (fish_ingest_food_item) fixed
- the assignment ln 371 `this%food_items_eaten(1) = loc_new_food_item`
did not pass all data components even though both are same type
due to assignment (=) overloading in downstream FOOD_ITEM class
- assignment overloading was deleted in r8720

24 lines of code changed in 2 files:

sbu062 2019-10-04 19:39 Rev.: 8721

better variable names, avoid assignment overloading

10 lines of code changed in 1 file:

sbu062 2019-10-04 19:08 Rev.: 8720

overloading `assignment (+)` is dangerous as can propagate over higher-order derived types, use (copy) method safer

0 lines of code changed in 1 file:

sbu062 2019-10-04 16:28 Rev.: 8719

debug code

18 lines of code changed in 2 files:

sbu062 2019-10-04 16:09 Rev.: 8718

debug code

40 lines of code changed in 2 files:

sbu062 2019-10-04 16:06 Rev.: 8717

larger array limit

1 lines of code changed in 1 file:

sbu062 2019-10-04 11:32 Rev.: 8716

(step): procedure to update stomach and food items at each time step

53 lines of code changed in 1 file:

sbu062 2019-10-04 10:12 Rev.: 8715

added comments

6 lines of code changed in 1 file:

sbu062 2019-10-04 10:03 Rev.: 8714

constructors with default values

35 lines of code changed in 1 file:

sbu062 2019-10-04 09:49 Rev.: 8713

(zero) normally destructs food item

7 lines of code changed in 1 file:

sbu062 2019-10-04 09:39 Rev.: 8712

(food_item_eaten_set_zero_init_state): arbitrary parameters for constructor

19 lines of code changed in 1 file:

sbu062 2019-10-04 09:28 Rev.: 8711

example table widget from dislin doc

44 lines of code changed in 1 file:

sbu062 2019-10-03 17:11 Rev.: 8710

doxygen comments, some fixes

15 lines of code changed in 1 file:

sbu062 2019-10-03 17:00 Rev.: 8709

appetite function and computing backend: (appetite_func) (fish_appetite_factor_stomach)

99 lines of code changed in 7 files:

sbu062 2019-10-03 13:08 Rev.: 8708

(appetite_stomach): calculate appetite factor

28 lines of code changed in 1 file:

sbu062 2019-10-03 12:44 Rev.: 8707

delete obsolete code

0 lines of code changed in 1 file:

sbu062 2019-10-03 12:13 Rev.: 8706

(food_volume): calculate total food volume in stomach

12 lines of code changed in 1 file:

sbu062 2019-10-03 09:26 Rev.: 8705

fix comment

1 lines of code changed in 1 file:

sbu062 2019-10-03 08:29 Rev.: 8704

minor fix texts

2 lines of code changed in 1 file:

sbu062 2019-10-03 08:08 Rev.: 8703

better doxygen comments

4 lines of code changed in 1 file:

sbu062 2019-10-03 08:02 Rev.: 8702

only doxygen comments

25 lines of code changed in 1 file:

sbu062 2019-10-02 20:24 Rev.: 8701

better doxygen descriptions

13 lines of code changed in 1 file:

sbu062 2019-10-02 19:42 Rev.: 8700

cleaner logistic parameters in (food_item_volume)

5 lines of code changed in 1 file:

sbu062 2019-10-02 19:34 Rev.: 8699

delete obsolete proc

1 lines of code changed in 1 file:

sbu062 2019-10-02 18:22 Rev.: 8698

(save_stomach_transport_data): save stomach transport data for a single food item into csv file

19 lines of code changed in 2 files:

sbu062 2019-10-02 18:04 Rev.: 8697

add CSV_IO

5130 lines of code changed in 3 files:

sbu062 2019-10-02 17:58 Rev.: 8696

fix logistic formula in (food_item_volume), must have been increment over dry volume

6 lines of code changed in 4 files:

sbu062 2019-10-02 17:24 Rev.: 8695

use (food_item_volume) in (do_plot_stomach_transport_global) for plotting

5 lines of code changed in 1 file:

sbu062 2019-10-02 16:52 Rev.: 8694

obsolete code deleted

0 lines of code changed in 1 file:

sbu062 2019-10-02 16:51 Rev.: 8693

better comments in (food_item_volume)

6 lines of code changed in 1 file:

sbu062 2019-10-02 16:46 Rev.: 8692

stomach transport grid parameters more realistic
- food goes out fully during apprx. 10 h (36000 s)

8 lines of code changed in 1 file:

sbu062 2019-10-02 16:08 Rev.: 8691

small change

3 lines of code changed in 1 file:

sbu062 2019-10-02 14:57 Rev.: 8690

use (logistic) backend

2 lines of code changed in 1 file:

sbu062 2019-10-02 14:49 Rev.: 8689

(logistic) is logistic function

16 lines of code changed in 1 file:

sbu062 2019-10-02 12:50 Rev.: 8688

old type-bound function obsolete

0 lines of code changed in 1 file:

sbu062 2019-10-02 12:48 Rev.: 8687

backend function (food_item_volume) is done

17 lines of code changed in 1 file:

sbu062 2019-10-02 12:31 Rev.: 8686

(food_item_volume) is the calculation backend for single food item

119 lines of code changed in 2 files:

cje012 2019-10-02 11:50 Rev.: 8685

Added light grey dashed lines to figure 4 to assist the reader.

1 lines of code changed in 1 file:

sbu062 2019-10-02 11:29 Rev.: 8684

doxygen comments searate for two parameters
- but they are identical

8 lines of code changed in 1 file:

sbu062 2019-10-02 11:28 Rev.: 8683

water uptake pattern is logistic growth fnction, additional global parameters

57 lines of code changed in 5 files:

cje012 2019-10-02 11:14 Rev.: 8682

Fixed minor bug in figure F

1 lines of code changed in 1 file:

cje012 2019-10-02 10:59 Rev.: 8681

Changed y-axis lable of figure Fa (survival.plot) and make the y-axis start on 0 like in the other plots that make up this figure.

2 lines of code changed in 1 file:

sbu062 2019-10-02 10:55 Rev.: 8680

(water_uptake) must be function

13 lines of code changed in 1 file:

sbu062 2019-10-02 09:23 Rev.: 8679

ingestion_delay is a property pf food item rather than fish

21 lines of code changed in 1 file:

cje012 2019-10-02 06:38 Rev.: 8678

Renamed Lifetime Mortality Risk to Accumulated Mortality Risk in figure C to reflect the terms used in the stochastic paper.

1 lines of code changed in 1 file:

sbu062 2019-10-01 20:07 Rev.: 8677

(time_update) method for FOOD_ITEM_EATEN class

19 lines of code changed in 1 file:

sbu062 2019-10-01 20:00 Rev.: 8676

(volume_stomach) method more logical in FOOD_ITEM_EATEN class, also no need in time in stomach argument

26 lines of code changed in 2 files:

sbu062 2019-10-01 19:48 Rev.: 8675

FISH class name better for highest order object, base is more logical name FISH_SKEL

5 lines of code changed in 1 file:

sbu062 2019-10-01 19:42 Rev.: 8674

water uptake moved to THE_FISH FOOD_ITEM_EATEN class

12 lines of code changed in 2 files:

sbu062 2019-10-01 19:03 Rev.: 8673

(init_ingest) uses `class` as input, generic better

1 lines of code changed in 1 file:

sbu062 2019-10-01 18:59 Rev.: 8672

reorder as in standard `assignment_sub(out,in)`

1 lines of code changed in 2 files:

sbu062 2019-10-01 18:51 Rev.: 8671

better use `=` assignment operator overloaded for FOOD_ITEM class

19 lines of code changed in 2 files:

sbu062 2019-10-01 18:12 Rev.: 8670

added rudimentary init constructor for FISH object

13 lines of code changed in 1 file:

sbu062 2019-10-01 18:06 Rev.: 8669

reformat white space only

4 lines of code changed in 2 files:

sbu062 2019-10-01 18:03 Rev.: 8668

adapt to arrays, redeclared elemental; optional arguments for zero states

31 lines of code changed in 2 files:

sbu062 2019-10-01 17:17 Rev.: 8667

FOOD_ITEM object (init) method now accepts optional missing

7 lines of code changed in 2 files:

sbu062 2019-10-01 17:01 Rev.: 8666

flere sma endringer i bussen

16 lines of code changed in 2 files:

sbu062 2019-10-01 15:31 Rev.: 8665

building objects

40 lines of code changed in 1 file:

sbu062 2019-10-01 14:55 Rev.: 8664

better use fixed array of foor items
- simple fixed stack object
- no aliasing unlike linked list
- use heap arrays

13 lines of code changed in 2 files:

sbu062 2019-10-01 14:40 Rev.: 8663

started implementing food and fish stomach objects

75 lines of code changed in 4 files:

sbu062 2019-10-01 13:13 Rev.: 8662

better name

3 lines of code changed in 1 file:

sbu062 2019-10-01 07:11 Rev.: 8661

doxygen: two entries were collapsed, confusion

1 lines of code changed in 1 file:

sbu062 2019-10-01 07:09 Rev.: 8660

better comments

30 lines of code changed in 3 files:

September 2019 »

Generated by StatSVN 0.7.0