June 2016 Commit Log

Number of Commits:
304
Number of Active Developers:
7
sbu062 2016-06-30 22:46 Rev.: 1050

reorganised parameters

11 lines of code changed in 1 file:

sbu062 2016-06-30 22:41 Rev.: 1049

comments on effects hormones

16 lines of code changed in 1 file:

sbu062 2016-06-30 22:17 Rev.: 1048

fixed sex, init genome uses sex now

62 lines of code changed in 1 file:

judyjinn 2016-06-30 21:02 Rev.: 1047

fixed the unable to restart from restart.txt file problem

696 lines of code changed in 2 files:

sbu062 2016-06-30 21:01 Rev.: 1046

fix to compile model_03

1 lines of code changed in 1 file:

sbu062 2016-06-30 20:44 Rev.: 1045

fix code comments

2 lines of code changed in 2 files:

sbu062 2016-06-30 20:18 Rev.: 1044

cleanup doc

46 lines of code changed in 1 file:

sbu062 2016-06-30 17:02 Rev.: 1043

Copied Makefile to the trivial string model tutorial

1 lines of code changed in 1 file:

sbu062 2016-06-30 17:01 Rev.: 1042

moved HEDG2_03.f90 to the newly created tutorial folder

1 lines of code changed in 2 files:

sbu062 2016-06-30 16:59 Rev.: 1041

moved HEDG2_02.f90 to OO model tutorial folder

1 lines of code changed in 2 files:

sbu062 2016-06-30 16:56 Rev.: 1039

Fixed targetto build the library callable from R

2 lines of code changed in 1 file:

sbu062 2016-06-30 16:55 Rev.: 1038

trivial main program is added

5 lines of code changed in 1 file:

sbu062 2016-06-30 16:02 Rev.: 1037

more fixed doc

44 lines of code changed in 1 file:

sbu062 2016-06-30 15:47 Rev.: 1036

forgot to mention IEEE modules in scheme outline + added on Makefiles in HEDTOOLS and model dir

26 lines of code changed in 1 file:

glj042 2016-06-30 15:02 Rev.: 1035

No changes to the code but to comments by Gabbi.

54 lines of code changed in 1 file:

sbu062 2016-06-30 15:01 Rev.: 1034

fixed new fig, forgot IEEE modules

77 lines of code changed in 2 files:

rdi003 2016-06-30 13:10 Rev.: 1033

added base for patch model

599 lines of code changed in 3 files:

sbu062 2016-06-30 10:30 Rev.: 1032

added overview of modules to doc

63 lines of code changed in 1 file:

sbu062 2016-06-30 10:30 Rev.: 1031

added more pics for doc

233 lines of code changed in 2 files:

rdi003 2016-06-30 09:13 Rev.: 1030

moved files to subdir

0 lines of code changed in 8 files:

nzlcj 2016-06-30 09:11 Rev.: 1029

After working on code together. Removed spawn and return with zero spawning, reduced number of c categories.

48 lines of code changed in 1 file:

rdi003 2016-06-30 08:59 Rev.: 1028

added sphinx docs for old HED24_rjd

0 lines of code changed in 72 files:

rdi003 2016-06-30 08:58 Rev.: 1027

added plotting script, presumed not working

0 lines of code changed in 1 file:

rdi003 2016-06-30 08:58 Rev.: 1026

added python trial functions to old HED24_rjd

258 lines of code changed in 5 files:

sbu062 2016-06-29 14:23 Rev.: 1025

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-29 14:21 Rev.: 1024

minor fix

5 lines of code changed in 1 file:

sbu062 2016-06-29 14:16 Rev.: 1023

doc, separate make distro for Windows

2 lines of code changed in 1 file:

sbu062 2016-06-29 13:48 Rev.: 1022

added short R script to build shared library model and do a trivial plot

0 lines of code changed in 1 file:

cje012 2016-06-29 13:37 Rev.: 1021

Futher changes to make the code easier to read :)

4 lines of code changed in 1 file:

glj042 2016-06-29 13:35 Rev.: 1020

Edited by Gabbi

40 lines of code changed in 1 file:

sbu062 2016-06-29 12:49 Rev.: 1019

R library version is functional

5 lines of code changed in 1 file:

cje012 2016-06-29 11:52 Rev.: 1018

Comments and changes to make the code easier to read.

29 lines of code changed in 1 file:

cje012 2016-06-29 11:51 Rev.: 1017

minor updates

1 lines of code changed in 1 file:

jwe041 2016-06-29 11:28 Rev.: 1016

ghjgjh

0 lines of code changed in 1 file:

glj042 2016-06-29 10:57 Rev.: 1015

Minor modifications by Gabbi.

52 lines of code changed in 1 file:

sbu062 2016-06-29 06:59 Rev.: 1014

added build notes at head

15 lines of code changed in 1 file:

sbu062 2016-06-29 06:29 Rev.: 1013

disabled extra arrays so far

1 lines of code changed in 1 file:

sbu062 2016-06-29 06:29 Rev.: 1012

initial implement shared lib for R

30 lines of code changed in 1 file:

sbu062 2016-06-29 06:23 Rev.: 1011

copy source for building shared library callable from R

27 lines of code changed in 1 file:

sbu062 2016-06-28 19:55 Rev.: 1010

hormones - minor changes

21 lines of code changed in 1 file:

sbu062 2016-06-28 19:44 Rev.: 1009

cleanup header comments

2 lines of code changed in 3 files:

sbu062 2016-06-28 15:29 Rev.: 1008

small changes to doc

9 lines of code changed in 1 file:

glj042 2016-06-28 15:10 Rev.: 1007

Sinecurve function needed to run pacificherring.m

18 lines of code changed in 1 file:

glj042 2016-06-28 15:09 Rev.: 1006

Minor corrections by Gabbi to the last version of the code.

72 lines of code changed in 1 file:

sbu062 2016-06-28 14:48 Rev.: 1005

truncate data at t, maximum time - non-initialised ind values may be very wierd and they are appended below the last t

1 lines of code changed in 2 files:

sbu062 2016-06-28 12:47 Rev.: 1004

fix long lines support, did wrong previously

3 lines of code changed in 1 file:

sbu062 2016-06-28 12:45 Rev.: 1003

forgot to add long line support for gfortran in debug flags

1 lines of code changed in 1 file:

nzlcj 2016-06-28 12:19 Rev.: 1002

Worked on code together. Changed how spawning proportion was organized. Allowed for extra spawning category for final spawning/semelparity. Debug required.

53 lines of code changed in 1 file:

sbu062 2016-06-28 12:18 Rev.: 1001

added forward data generated by the initial model

67 lines of code changed in 1 file:

sbu062 2016-06-28 12:14 Rev.: 1000

added option to buils shared library callable from R dyn.load

9 lines of code changed in 1 file:

cje012 2016-06-28 11:48 Rev.: 999

Added a small txt file with some subversion commands.

0 lines of code changed in 1 file:

cje012 2016-06-28 11:43 Rev.: 998

minor changes

4 lines of code changed in 1 file:

sbu062 2016-06-28 11:40 Rev.: 997

added matlab source file from trunk

0 lines of code changed in 1 file:

sbu062 2016-06-28 11:39 Rev.: 996

small changes, reverted to unformatted binary file

8 lines of code changed in 2 files:

cje012 2016-06-28 11:31 Rev.: 995

minor changes

4 lines of code changed in 1 file:

nzlcj 2016-06-28 11:05 Rev.: 994

First import of Gabbi's matlab code, Gabbi is now working on the trunk.

258 lines of code changed in 1 file:

nzlcj 2016-06-28 11:03

0 lines of code changed in 2 files:

sbu062 2016-06-28 10:43 Rev.: 987

made private folder for Gabriella

0 lines of code changed in 1 file:

sbu062 2016-06-28 10:24 Rev.: 985

added hedtools from trunk

0 lines of code changed in 1 file:

sbu062 2016-06-28 10:24 Rev.: 984

removed non-ancestral hedtools

0 lines of code changed in 1 file:

sbu062 2016-06-28 10:22 Rev.: 983

added hedtools fromj trunk

27079 lines of code changed in 54 files:

sbu062 2016-06-28 10:21 Rev.: 982

Deleted non-ancestral hedtools, will copy from repo

0 lines of code changed in 54 files:

sbu062 2016-06-28 09:44 Rev.: 981

reintegrated doc

147 lines of code changed in 1 file:

sbu062 2016-06-28 09:44 Rev.: 980

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-28 09:42 Rev.: 979

reintegrated - added images

0 lines of code changed in 5 files:

sbu062 2016-06-28 09:41 Rev.: 978

added more images

0 lines of code changed in 4 files:

sbu062 2016-06-28 09:38 Rev.: 977

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-28 09:37 Rev.: 976

added tortoisesvn setup on windows to doc

73 lines of code changed in 1 file:

jwe041 2016-06-28 09:16 Rev.: 975

adding HEADTOOLS

27080 lines of code changed in 55 files:

jwe041 2016-06-28 08:55 Rev.: 974

create own copy

0 lines of code changed in 2 files:

sbu062 2016-06-28 08:28

fixed make_run on Windows

14 lines of code changed in 2 files:

cje012 2016-06-28 08:22 Rev.: 970

Copying HEDTOOLS to my private branch

0 lines of code changed in 1 file:

sbu062 2016-06-28 06:51 Rev.: 969

fixed extra quote in info

1 lines of code changed in 1 file:

sbu062 2016-06-28 06:44

fixed run_local on Windows

15 lines of code changed in 2 files:

sbu062 2016-06-28 06:19

reintegrated deallocate

24 lines of code changed in 2 files:

sbu062 2016-06-28 06:16 Rev.: 964

deallocate for column headers

12 lines of code changed in 1 file:

sbu062 2016-06-28 05:51 Rev.: 963

minor move

2 lines of code changed in 1 file:

sbu062 2016-06-27 21:02 Rev.: 962

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-27 21:02 Rev.: 961

add pic

0 lines of code changed in 1 file:

sbu062 2016-06-27 21:00 Rev.: 960

fix doc

47 lines of code changed in 1 file:

sbu062 2016-06-27 20:09 Rev.: 959

small cleanup of code -- allosteps is integer

8 lines of code changed in 1 file:

sbu062 2016-06-27 19:41 Rev.: 958

Christian, I set keywords - the first line of code, that will be autoupdated and point to the latest date and revision

15 lines of code changed in 1 file:

sbu062 2016-06-27 19:39 Rev.: 957

virtually no change

2 lines of code changed in 1 file:

sbu062 2016-06-27 19:38 Rev.: 956

Camilla, I also set keywords that will auto-update i the first lines of thc code

17 lines of code changed in 2 files:

sbu062 2016-06-27 18:37 Rev.: 955

reformatted model, removed extra outputs

24 lines of code changed in 1 file:

sbu062 2016-06-27 18:26 Rev.: 954

setted keywords

7 lines of code changed in 2 files:

sbu062 2016-06-27 16:15 Rev.: 953

deleted extra csv's

49 lines of code changed in 1 file:

sbu062 2016-06-27 15:58 Rev.: 952

added doc on portability

6 lines of code changed in 1 file:

sbu062 2016-06-27 15:22 Rev.: 951

reintegrated from budaev - fix column name labels

0 lines of code changed in 2 files:

sbu062 2016-06-27 15:21 Rev.: 950

reintegrated from budaev -- fix column labels, now check overall string length

28 lines of code changed in 1 file:

sbu062 2016-06-27 15:17 Rev.: 949

fixed wrong column headers - was checking only first maximum label length, now overall maximum checks

28 lines of code changed in 1 file:

sbu062 2016-06-27 13:49 Rev.: 948

added Makefile for building model with HEDTOOLS

1 lines of code changed in 1 file:

sbu062 2016-06-27 13:46 Rev.: 947

quick and dirty CSV output by slicing multidimensional arrays

27 lines of code changed in 1 file:

sbu062 2016-06-27 13:46 Rev.: 946

added makefile for hormone model

2 lines of code changed in 1 file:

sbu062 2016-06-27 12:58 Rev.: 945

corrected for gfortran portability and added initial csv output

49 lines of code changed in 1 file:

cje012 2016-06-27 12:43 Rev.: 944

Copying matlab file from trunk to my private branch

4 lines of code changed in 1 file:

nzlcj 2016-06-27 12:26 Rev.: 943

Copied original matlab code to trunk

0 lines of code changed in 1 file:

nzlcj 2016-06-27 12:11

12 lines of code changed in 210 files:

cje012 2016-06-27 11:25 Rev.: 936

Changed allosteps into an integer (was real) and changed form='binary' to form='unformatted' to get the program to compile and run in gfortran

0 lines of code changed in 2 files:

sbu062 2016-06-27 11:06 Rev.: 935

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-27 10:59 Rev.: 934

added length of line to doc

5 lines of code changed in 1 file:

sbu062 2016-06-27 09:30 Rev.: 933

copied Camilla's code for hormone model

24 lines of code changed in 1 file:

sbu062 2016-06-27 09:25 Rev.: 931

added formatting long lines to doc -- prog style

16 lines of code changed in 1 file:

sbu062 2016-06-27 08:32 Rev.: 930

small fix doc

15 lines of code changed in 1 file:

cje012 2016-06-24 11:41 Rev.: 929

Testing subversion and trying to remove a file

0 lines of code changed in 1 file:

cje012 2016-06-24 11:39 Rev.: 928

Testing subversion and trying to add and commit a file

0 lines of code changed in 1 file:

sbu062 2016-06-22 23:06 Rev.: 925

minor fix comment

2 lines of code changed in 1 file:

sbu062 2016-06-22 22:30 Rev.: 924

deleted gsize, csize_vect, clabel_vect from genome_init_random function, these parameters are public from COMMONDATA, so not needed

6 lines of code changed in 1 file:

sbu062 2016-06-22 20:48 Rev.: 923

length_chromosome array in INDIVIDUAL_GENOME object is not needed as we have chromosome%clength defining length of the chromosome, so no allocate needed

0 lines of code changed in 1 file:

sbu062 2016-06-22 13:00 Rev.: 922

fix minimum and maximum allele values in commondata

5 lines of code changed in 1 file:

sbu062 2016-06-22 12:57 Rev.: 921

fix comment formula

3 lines of code changed in 1 file:

sbu062 2016-06-22 12:45 Rev.: 920

allele conversion and rescaling function for integer alala values in real gamma function. see implementation notes for GENE object

14 lines of code changed in 1 file:

sbu062 2016-06-22 11:53 Rev.: 919

added comment on allele value implementation -- they are integers rather than reals

12 lines of code changed in 1 file:

sbu062 2016-06-22 08:26 Rev.: 918

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-22 08:25 Rev.: 917

reintegrated

10 lines of code changed in 2 files:

nzlcj 2016-06-22 08:23

12 lines of code changed in 2 files:

sbu062 2016-06-22 08:22 Rev.: 914

updated doc

0 lines of code changed in 1 file:

sbu062 2016-06-22 08:21 Rev.: 913

reintegfated doc

8 lines of code changed in 1 file:

sbu062 2016-06-22 08:19 Rev.: 912

reintegrated makefile

2 lines of code changed in 1 file:

sbu062 2016-06-22 08:16 Rev.: 911

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-22 08:15 Rev.: 910

minor fix

2 lines of code changed in 1 file:

sbu062 2016-06-22 08:13 Rev.: 909

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-22 08:12 Rev.: 908

fixed command line compile with static lib, it works on all platforms simpler way

11 lines of code changed in 2 files:

sbu062 2016-06-21 20:36

reintegrated latest fix to readme for lib

10 lines of code changed in 2 files:

sbu062 2016-06-21 20:31 Rev.: 905

fixed link instructions in static lib readme

5 lines of code changed in 1 file:

sbu062 2016-06-21 19:44 Rev.: 904

solved conflict with makefile in templates

0 lines of code changed in 1 file:

sbu062 2016-06-21 19:37 Rev.: 903

reintegrated

451 lines of code changed in 6 files:

sbu062 2016-06-21 19:29 Rev.: 902

reintegrated

451 lines of code changed in 6 files:

sbu062 2016-06-21 19:23 Rev.: 901

deleted notes

0 lines of code changed in 1 file:

sbu062 2016-06-21 19:09 Rev.: 899

added keywords

2 lines of code changed in 1 file:

sbu062 2016-06-21 19:07 Rev.: 898

updated template makefile from MOD2

14 lines of code changed in 1 file:

sbu062 2016-06-21 19:05 Rev.: 897

Cleanup makefile and added keywords

7 lines of code changed in 4 files:

sbu062 2016-06-21 19:02 Rev.: 896

cleanup Makefile for compatibility portability safe on Oracle

17 lines of code changed in 1 file:

sbu062 2016-06-21 18:36 Rev.: 895

changed compiler optimisation to safe O1 for Solaris Studio, f95 and executables crash on 64 bit systems magical errors with O3 and autopar

3 lines of code changed in 1 file:

sbu062 2016-06-21 16:57 Rev.: 894

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-21 16:56 Rev.: 893

updated doc - added array routines for arbitrary random numbers

42 lines of code changed in 1 file:

sbu062 2016-06-21 16:05 Rev.: 892

implemented RNORM array with arbitrary mean and variance

172 lines of code changed in 1 file:

sbu062 2016-06-21 09:08 Rev.: 891

fix doxygen comments

20 lines of code changed in 1 file:

sbu062 2016-06-21 08:45 Rev.: 890

implemented RAND alias function

6 lines of code changed in 1 file:

sbu062 2016-06-20 21:54 Rev.: 889

fix commented out nested loop versions -- deleted

0 lines of code changed in 1 file:

sbu062 2016-06-20 21:51 Rev.: 888

implemented renormalised functions for uniformly distributed arrays with arbitrary range

49 lines of code changed in 1 file:

sbu062 2016-06-20 15:42 Rev.: 887

moved gamma2gene to NEUROBIO module, more logical

42 lines of code changed in 1 file:

sbu062 2016-06-20 15:40 Rev.: 886

moved gamma2gene to The individual

41 lines of code changed in 1 file:

sbu062 2016-06-20 15:37 Rev.: 885

fix

3 lines of code changed in 1 file:

sbu062 2016-06-20 15:26 Rev.: 884

fix possible range for perception

3 lines of code changed in 1 file:

sbu062 2016-06-20 15:18 Rev.: 883

implemented gamma2gene with Gaussian perception error

39 lines of code changed in 1 file:

sbu062 2016-06-20 14:28 Rev.: 882

implemented renormalised normal random variates, no respective array functions yet.

65 lines of code changed in 2 files:

sbu062 2016-06-20 12:31 Rev.: 881

implemented renormalised random uniforms with integer range

33 lines of code changed in 1 file:

sbu062 2016-06-20 12:10 Rev.: 880

implemented uniform random numbers with arbitrary range, plus generic integface

24 lines of code changed in 1 file:

sbu062 2016-06-20 11:46 Rev.: 879

implemented renormalisation functions for uniform random numbers

41 lines of code changed in 1 file:

sbu062 2016-06-20 08:34

reintegrated

53 lines of code changed in 4 files:

sbu062 2016-06-20 08:28 Rev.: 875

removed/moved to doc outdated readme files

0 lines of code changed in 2 files:

sbu062 2016-06-18 10:17 Rev.: 866

reintegrated again from budaev - moving images

3184 lines of code changed in 56 files:

sbu062 2016-06-18 10:09 Rev.: 864

copied Doxyfile with updated path to img to templates

2353 lines of code changed in 1 file:

sbu062 2016-06-18 10:07 Rev.: 863

updated path to img - they were moved to avoid clutter in root

1 lines of code changed in 1 file:

sbu062 2016-06-18 10:02

reintegrated from budaev

947 lines of code changed in 60 files:

sbu062 2016-06-18 09:57 Rev.: 860

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-18 09:56 Rev.: 859

updated all pathes to images from root to doc/img in the text

31 lines of code changed in 1 file:

sbu062 2016-06-18 09:42

moving images to img

825 lines of code changed in 22 files:

sbu062 2016-06-18 09:37

moving images to img

0 lines of code changed in 26 files:

sbu062 2016-06-18 09:34

moving images to img

0 lines of code changed in 6 files:

sbu062 2016-06-18 09:07 Rev.: 829

minor fix link to win32

2 lines of code changed in 1 file:

sbu062 2016-06-17 21:42 Rev.: 828

minor fix, doc

8 lines of code changed in 1 file:

sbu062 2016-06-17 14:38 Rev.: 827

fix pic

0 lines of code changed in 1 file:

sbu062 2016-06-17 14:32 Rev.: 826

added code::blocks building to doc

29 lines of code changed in 4 files:

sbu062 2016-06-17 12:09 Rev.: 825

Reintegrated from budaev

8 lines of code changed in 1 file:

sbu062 2016-06-17 12:07 Rev.: 824

reintegrated from budaev

8 lines of code changed in 1 file:

sbu062 2016-06-17 12:04 Rev.: 823

added warning if uname and zip unavailable, crucial on Windows

8 lines of code changed in 1 file:

sbu062 2016-06-17 11:39 Rev.: 822

reintegrated from budaev

26 lines of code changed in 3 files:

sbu062 2016-06-17 11:34 Rev.: 821

reintegrated from budaev

26 lines of code changed in 3 files:

sbu062 2016-06-17 11:31 Rev.: 820

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-17 11:29 Rev.: 819

added info on utils that may not be available on Windows platform

15 lines of code changed in 2 files:

sbu062 2016-06-16 19:57 Rev.: 818

"Removed_using_TkSVN"

0 lines of code changed in 6 files:

sbu062 2016-06-16 17:55 Rev.: 817

minor fixes

3 lines of code changed in 2 files:

judyjinn 2016-06-16 16:04 Rev.: 816

Finally got the numinds array updating correctly. Now counts only living individuals

41 lines of code changed in 1 file:

judyjinn 2016-06-16 14:03 Rev.: 815

reverted back to regular numinds counting

5 lines of code changed in 1 file:

judyjinn 2016-06-16 13:58 Rev.: 814

added correct common block file and the msic folder

396 lines of code changed in 122 files:

judyjinn 2016-06-16 13:56 Rev.: 812

deleted the two HED files that were unused

127 lines of code changed in 1 file:

sbu062 2016-06-16 12:18 Rev.: 811

insert revision number from SVN to readme in zip distro

4 lines of code changed in 1 file:

sbu062 2016-06-16 12:13 Rev.: 810

zipfile distro file name now includes platform, compiler and revision for convenience

4 lines of code changed in 1 file:

sbu062 2016-06-16 11:51

reintegrated from budaev

62 lines of code changed in 8 files:

sbu062 2016-06-16 11:48 Rev.: 807

update pdf, + additional pic for doc

0 lines of code changed in 2 files:

sbu062 2016-06-16 11:47 Rev.: 806

fixed parallel code in intel fortran for windows, fix doc on Visual Studio - still need to include .mod files!

26 lines of code changed in 2 files:

judyjinn 2016-06-16 11:46 Rev.: 805

Finished removing all extarneous txt files

658 lines of code changed in 1 file:

sbu062 2016-06-16 09:49 Rev.: 804

small fix, added footnote to doc

8 lines of code changed in 1 file:

sbu062 2016-06-16 09:35 Rev.: 803

reintegrated latest changes

140 lines of code changed in 3 files:

sbu062 2016-06-16 09:33 Rev.: 802

reintegrated

140 lines of code changed in 3 files:

sbu062 2016-06-16 09:29 Rev.: 801

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-16 09:25 Rev.: 800

help in Makefile , added to doc on builds with static lib

140 lines of code changed in 2 files:

judyjinn 2016-06-16 09:08 Rev.: 799

first commit of day, added SR to calculate summaries at the end of each generation with average numinds per location. Last commit before removing extraneous txt files

151 lines of code changed in 1 file:

sbu062 2016-06-15 22:52 Rev.: 798

Reintegrated changes to trunk - now can integrate as static lib in Visual Studio

218 lines of code changed in 6 files:

sbu062 2016-06-15 22:48 Rev.: 797

reintegrated latest changes

218 lines of code changed in 7 files:

sbu062 2016-06-15 22:45 Rev.: 796

additional pics on Visual Studio

0 lines of code changed in 3 files:

sbu062 2016-06-15 22:40 Rev.: 795

fixed Windows build with Intel Fortran

6 lines of code changed in 1 file:

sbu062 2016-06-15 22:39 Rev.: 794

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-15 22:37 Rev.: 793

Fixed Makefile to build static library on Windows, pluggable to Visual Studio, updated doc manual

218 lines of code changed in 2 files:

sbu062 2016-06-15 12:34 Rev.: 792

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-15 12:32 Rev.: 791

Reintegrated latest changes in doc on Intel Fortran with Windows

30 lines of code changed in 3 files:

sbu062 2016-06-15 12:26 Rev.: 790

updated from budaev

0 lines of code changed in 1 file:

sbu062 2016-06-15 12:22 Rev.: 789

reintegrated

49 lines of code changed in 4 files:

sbu062 2016-06-15 12:15 Rev.: 788

update pdf

0 lines of code changed in 1 file:

sbu062 2016-06-15 12:12 Rev.: 787

fix doc on initialising Intel Fortran environment for command prompt on Windows

26 lines of code changed in 3 files:

judyjinn 2016-06-15 11:18 Rev.: 786

first commit of the day. Everything running

146 lines of code changed in 2 files:

sbu062 2016-06-15 05:51 Rev.: 785

fix comments in Makefile

2 lines of code changed in 1 file:

sbu062 2016-06-14 19:28 Rev.: 783

updated pdf -- added instructions on Intel Parallel Studio on Windows

0 lines of code changed in 1 file:

sbu062 2016-06-14 19:21 Rev.: 782

reintegrated latest from budaev

151 lines of code changed in 6 files:

sbu062 2016-06-14 19:18 Rev.: 781

updated pdf in trunk

0 lines of code changed in 1 file:

sbu062 2016-06-14 19:06 Rev.: 780

reintegrated latest from budaev

151 lines of code changed in 6 files:

sbu062 2016-06-14 19:00 Rev.: 779

updated pdf

0 lines of code changed in 1 file:

sbu062 2016-06-14 18:57 Rev.: 778

added pics to doc

0 lines of code changed in 3 files:

sbu062 2016-06-14 18:55 Rev.: 777

Fixed Makefile to work with Intel Fortran on Windows, added to doc how to set up build command prompt environment for Windows

151 lines of code changed in 2 files:

sbu062 2016-06-14 17:58 Rev.: 776

updated comments for Intel Parallel Studio on Windows platform

12 lines of code changed in 1 file:

sbu062 2016-06-14 15:08 Rev.: 775

fix Makefile for Intel Fortran on Windows

2 lines of code changed in 1 file:

sbu062 2016-06-14 01:35 Rev.: 774

adapted makefile for Intel Compiler on Windows

56 lines of code changed in 1 file:

judyjinn 2016-06-13 13:02 Rev.: 773

first commit of the day. added a CSV for avggene and sd gene

227 lines of code changed in 1 file:

judyjinn 2016-06-10 17:37 Rev.: 772

changed the move risk NR so it reflects branches with different difficulties more accurately

38 lines of code changed in 2 files:

judyjinn 2016-06-10 16:56 Rev.: 771

working on getting the code going with added predNR in hunger response

225 lines of code changed in 3 files:

judyjinn 2016-06-10 15:14 Rev.: 770

Fixed a wrong variable in SRpredmort for call SRground_vis. Also changed the predator attack section to be a little higher

64 lines of code changed in 2 files:

judyjinn 2016-06-10 13:10 Rev.: 769

now 4 levels, reduced SRreplen rate for buds, added height as a factor for predation risk.

12 lines of code changed in 2 files:

sbu062 2016-06-10 13:03 Rev.: 768

added three random hormones, need reflect genetic architecture

25 lines of code changed in 1 file:

sbu062 2016-06-10 11:54 Rev.: 767

added the hormonel level between genome and neurobiology

35 lines of code changed in 1 file:

judyjinn 2016-06-10 11:09 Rev.: 766

fixed the misaligned mult array problem i had earlier which happened when i removed the NRs

58 lines of code changed in 2 files:

judyjinn 2016-06-10 10:32 Rev.: 765

changed the numbudsBAS equation in SRnumBAS so it can be flexibly changed for each level of the tree

25 lines of code changed in 2 files:

sbu062 2016-06-09 17:30 Rev.: 764

reintegrated latest from budaev

96 lines of code changed in 3 files:

sbu062 2016-06-09 17:29 Rev.: 763

reintegrated latest changes in budaev

1085 lines of code changed in 4 files:

sbu062 2016-06-09 17:22 Rev.: 762

added Akin, Object oriented fortran book

0 lines of code changed in 1 file:

judyjinn 2016-06-09 13:36 Rev.: 761

adding acorns/buds seen as a hunger appraisal. Removed acorn forage attempts and stay risk from hunger response. changed popdyn prints to csv

151 lines of code changed in 2 files:

sbu062 2016-06-09 13:02 Rev.: 760

added new svn dir tree with a few comments + command to produce tree in hidden comments

13 lines of code changed in 1 file:

sbu062 2016-06-09 12:43 Rev.: 759

removed executable bit for Windows cmd

0 lines of code changed in 1 file:

judyjinn 2016-06-09 12:07 Rev.: 758

Beginning to test altering the NRs by adding and removing. This is the last commit of the original set up files with all NRS turned on with 34 tot NRs used

15 lines of code changed in 1 file:

judyjinn 2016-06-09 11:39 Rev.: 757

changed the max percept txt file to a csv output

58 lines of code changed in 1 file:

sbu062 2016-06-09 09:43 Rev.: 756

added a comment on older PRNG implementations like RAN

6 lines of code changed in 1 file:

judyjinn 2016-06-09 09:26 Rev.: 755

Fixed a NowMaxPercept error where the wrong value was being passed to #14

29 lines of code changed in 1 file:

judyjinn 2016-06-09 08:46 Rev.: 754

changed the boost2 conditions to be dependent on fpop size, not just a number

1 lines of code changed in 1 file:

judyjinn 2016-06-09 08:46 Rev.: 753

first commit of the morn.

2 lines of code changed in 1 file:

sbu062 2016-06-09 06:58 Rev.: 752

more fix prng comments

4 lines of code changed in 1 file:

sbu062 2016-06-09 06:54 Rev.: 751

fix comment on PRNG, added notes on GNU gfortran

5 lines of code changed in 1 file:

sbu062 2016-06-09 06:46 Rev.: 750

updated comment for PRNG

4 lines of code changed in 1 file:

sbu062 2016-06-08 20:17 Rev.: 749

fixed RAND_ARRAY to avoid loops altogether, it's trivial wrapper to random_number. Do we need function for that, producing matrix?

65 lines of code changed in 2 files:

judyjinn 2016-06-08 15:34 Rev.: 748

fixed the gen 101 problem. had forgotten to pass on the myacorn data and also moved the avgbud/acorn outside of the loop so it would calculate correctly

68 lines of code changed in 1 file:

sbu062 2016-06-08 09:47 Rev.: 747

reintegrated latest changes in HEDTOOLS, manual to christian's branch

0 lines of code changed in 4 files:

sbu062 2016-06-08 09:44 Rev.: 746

update pdf manual

0 lines of code changed in 1 file:

sbu062 2016-06-08 09:43 Rev.: 745

small fix in doc

3 lines of code changed in 1 file:

sbu062 2016-06-08 09:30 Rev.: 744

added to doc, a few changes on coding/optimization style

31 lines of code changed in 1 file:

sbu062 2016-06-07 19:50 Rev.: 743

added a few loop-free to doc + code

69 lines of code changed in 1 file:

judyjinn 2016-06-07 15:52 Rev.: 742

Code is up and running

2 lines of code changed in 1 file:

judyjinn 2016-06-07 15:21 Rev.: 741

Changed the move risk equation so the probability for death wasn't such a sharp drop off. Using a more realistic equation from Casteren 2013, PLoS1

23 lines of code changed in 1 file:

judyjinn 2016-06-07 12:49

still a lot of death by falling. Changing the NR perception for fall risk to simply location value instead of cummulative risk

68 lines of code changed in 2 files:

judyjinn 2016-06-07 12:23 Rev.: 738

tweaked the print outs so I can see the testgen summaries again. Squirrels moving just fine.

7 lines of code changed in 1 file:

judyjinn 2016-06-07 12:07 Rev.: 737

had forgotten to add +1 for time since last visit in foodmem code

24 lines of code changed in 1 file:

judyjinn 2016-06-07 11:50 Rev.: 736

updated the popdyn (file 12) print out so it would work. also changed the replen rate for buds to be higher so squirrels can't gain weight as fastcd

22 lines of code changed in 3 files:

judyjinn 2016-06-07 11:06 Rev.: 735

it runs! Need to scale parameters. squirrels currently gaining too much weight

2 lines of code changed in 1 file:

judyjinn 2016-06-07 10:50 Rev.: 734

I actually didn't fix that last time. Now I actually changed it to scale correctly with the squirrels max pop size

2 lines of code changed in 2 files:

judyjinn 2016-06-07 10:49 Rev.: 733

fixed a SRgenecreate error where it went into the SR when the number of survivors was quite high in proportion to true amount. Scaled the trigger for SRgenecreate by population size

211 lines of code changed in 2 files:

sbu062 2016-06-06 19:36 Rev.: 732

coding style update in doc

57 lines of code changed in 1 file:

judyjinn 2016-06-06 15:46 Rev.: 729

fixed the nearest cell problem by changing the initial nearest cell number from cells to 100

2 lines of code changed in 1 file:

judyjinn 2016-06-06 15:39 Rev.: 728

fixed a moving problem where I had set loc type for next loc == trunk instead of ==2.0

134 lines of code changed in 1 file:

judyjinn 2016-06-06 14:19 Rev.: 727

Code is compiling. signals appear to be showing up correctly, but errors occur as time steps go on and signal arrays disappear

203 lines of code changed in 2 files:

sbu062 2016-06-06 13:07 Rev.: 724

Make folder for the hormone model

0 lines of code changed in 1 file:

sbu062 2016-06-04 12:13

updated svn ignores

29 lines of code changed in 3 files:

sbu062 2016-06-03 17:39 Rev.: 720

implemented recalculate rank_id 's for chromosome objects and now fully implemented relocation-shift mutation

25 lines of code changed in 1 file:

sbu062 2016-06-03 17:21 Rev.: 719

returned to subprocedure scope for population objects sorting procedures, qsort, they are not portable

49 lines of code changed in 1 file:

sbu062 2016-06-03 17:17 Rev.: 718

returned back the sorting subcomponants for THE_GENOME, they cannot easily be made generic and portable

68 lines of code changed in 1 file:

sbu062 2016-06-03 16:57 Rev.: 717

Rearranged THE_POPULATION quicksort algorithm functions

54 lines of code changed in 1 file:

sbu062 2016-06-03 16:43 Rev.: 716

Fully implemented quick sort algorithm for sorting components of chromosome object

59 lines of code changed in 1 file:

sbu062 2016-06-03 16:24 Rev.: 715

implemented quicksort of genes by rank_id within a chromosome

70 lines of code changed in 1 file:

sbu062 2016-06-03 16:04 Rev.: 714

fix indices for rank_id

5 lines of code changed in 1 file:

sbu062 2016-06-03 15:53 Rev.: 713

rank renamed to rank_id

7 lines of code changed in 1 file:

sbu062 2016-06-03 15:48 Rev.: 712

moved rank (ID component) from CHROMOSOME to GENE

6 lines of code changed in 1 file:

sbu062 2016-06-03 15:36 Rev.: 711

initial implementation of mutate relocate + shift within the same chromosome, need sort func

26 lines of code changed in 1 file:

sbu062 2016-06-03 14:35 Rev.: 710

implemented chromosomal mutation, swap genes

94 lines of code changed in 1 file:

sbu062 2016-06-03 12:46 Rev.: 709

Revised names of the genome module objects, need to use style: class + component + operation + details

78 lines of code changed in 1 file:

sbu062 2016-06-03 09:48 Rev.: 708

small fix, doc

2 lines of code changed in 1 file:

judyjinn 2016-06-03 08:44 Rev.: 707

code compiles. Now fixing runtime bugs

131 lines of code changed in 2 files:

sbu062 2016-06-02 17:54 Rev.: 706

little fix

7 lines of code changed in 1 file:

sbu062 2016-06-02 15:00 Rev.: 705

fix the entangled array constructor for allele labels within the chromosome for better readability

3 lines of code changed in 1 file:

sbu062 2016-06-02 14:56 Rev.: 704

made allele constructed labels when initialising chromosome object

22 lines of code changed in 1 file:

sbu062 2016-06-02 13:27 Rev.: 703

Initial implementation of chromosomes and the genome

157 lines of code changed in 1 file:

judyjinn 2016-06-02 12:03 Rev.: 702

commented out all corrplot SRs. Updated some call random_ functions

491 lines of code changed in 1 file:

judyjinn 2016-06-02 11:43 Rev.: 701

finished modifying the partnerchoice SR

1 lines of code changed in 1 file:

judyjinn 2016-06-02 11:42 Rev.: 700

undid the bd() changes. Not sure what it does. commiting before editing

30 lines of code changed in 1 file:

judyjinn 2016-06-02 11:32 Rev.: 699

post changing all bd(), which may be completely wrong if class1=cellchoice

113 lines of code changed in 1 file:

sbu062 2016-06-02 11:16 Rev.: 698

... or AHA-BEAST

2 lines of code changed in 1 file:

sbu062 2016-06-02 11:15 Rev.: 697

name for the toolbox BEAST :)

7 lines of code changed in 1 file:

sbu062 2016-06-02 10:59 Rev.: 696

Implemented function to generate random strings

61 lines of code changed in 2 files:

judyjinn 2016-06-02 10:43 Rev.: 695

changed partnerchoice to 2. Find largest local male

142 lines of code changed in 2 files:

judyjinn 2016-06-02 08:51 Rev.: 694

fixing tabs in SRpartnerchoice

586 lines of code changed in 1 file:

sbu062 2016-06-01 22:35 Rev.: 693

fix chromosomes

6 lines of code changed in 1 file:

sbu062 2016-06-01 22:11 Rev.: 692

fix set allele recessive

10 lines of code changed in 1 file:

sbu062 2016-06-01 20:56 Rev.: 691

fix random dominant

2 lines of code changed in 1 file:

sbu062 2016-06-01 20:53 Rev.: 690

fix function to set recessive, then one of the others gets random dominant

21 lines of code changed in 1 file:

sbu062 2016-06-01 20:27 Rev.: 689

added random initialisation of the dominance status of the alleles, one of them is set dominant

10 lines of code changed in 1 file:

sbu062 2016-06-01 20:12 Rev.: 688

implemented doninant/recessive status of allele object + initial implementation of chromosome object, added more doxygen comments

79 lines of code changed in 1 file:

sbu062 2016-06-01 18:04 Rev.: 687

slettet dum kommentar fra seminar

1 lines of code changed in 1 file:

sbu062 2016-06-01 15:54 Rev.: 686

added separate relocation rate parameter across chromosomes

5 lines of code changed in 1 file:

sbu062 2016-06-01 15:45 Rev.: 685

the default build code is now model 04

1 lines of code changed in 1 file:

sbu062 2016-06-01 15:43 Rev.: 684

implemented point mutation or allele object

53 lines of code changed in 1 file:

sbu062 2016-06-01 14:50 Rev.: 683

started to implement alleles for AHA genetic architecture

148 lines of code changed in 1 file:

sbu062 2016-06-01 13:27 Rev.: 682

added subroutines to generate random integer arrays and matrices, needed for genetic structure in OO G2 code

249 lines of code changed in 2 files:

judyjinn 2016-06-01 09:37 Rev.: 681

accidentally changed too many (30)s. Changed back

14 lines of code changed in 1 file:

judyjinn 2016-06-01 09:30 Rev.: 680

changed all numinds to numinds(lev,loc,age)

229 lines of code changed in 1 file:

sbu062 2016-06-01 09:22 Rev.: 679

copied txt to f90 - this is the original code

0 lines of code changed in 1 file:

judyjinn 2016-06-01 08:59 Rev.: 678

finished changing subroutines. Fixing all bugs

487 lines of code changed in 1 file:

judyjinn 2016-06-01 08:40 Rev.: 677

started over from 1D environment and implementing the 2D subroutines

1105 lines of code changed in 1 file:

May 2016 »

Generated by StatSVN 0.7.0