October 2018 Commit Log

Number of Commits:

87

Number of Active Developers:

3

cje012 2018-10-31 15:03 #87 Rev.: 7469

Another bugfix..

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+1 -1)

cje012 2018-10-31 14:57 #86 Rev.: 7468

Minor change to code

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+1 -1)

cje012 2018-10-31 14:50 #85 Rev.: 7467

Fixed error introduced in last commit: Environment for t=1 was not saved.

2 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+2 -1)

cje012 2018-10-31 14:39 #84 Rev.: 7466

Fixed bug in the code, E_real was never updated in the initiation of the environment in the last version of the model.

4 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+4 -5)

cje012 2018-10-31 13:16 #83 Rev.: 7465

Reverted to last version.

6 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: parameters.f90 (+6 -11)

cje012 2018-10-31 13:05 #82 Rev.: 7464

Another try at making the environmtns that the individuals move in predictable. An array that contains the environment for every individual for every timestep is now calculated before the forward iteration in the model.

30 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+30 -26)

cje012 2018-10-31 12:13 #81

Trying to add a fixed seed to every individual.

33 lines of code changed in 2 files:

• hormones_v2/branches_camilla/parasitebranch_v1: Hormones_v2.f90 (+22 -3), parameters.f90 (+11 -6)

jwe041 2018-10-26 13:14 #80 Rev.: 7461

Defined a in parameters.f90 (coefficient for determining proportion between two types of mortality)

New mortality equation - including a - in Hormones_v2.f90

0 lines of code changed in 4 files:

• hormones_v2/stochastic_trunk_mortality: Hormones_v2.f90 (changed), parameters.f90 (new)

sbu062 2018-10-23 11:07 #79 Rev.: 7459

trac: disable extra menu items, roadmap, tickets, newtickst, they are not used for TEG

3 lines of code changed in 1 file:

• trunk/SVNSERVER/config/trac_prj/TEG_CODES/conf: trac.ini (+3 -3)

sbu062 2018-10-22 13:27 #78 Rev.: 7458

v2.4, changed to US spelling throughout

109 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+109 -110)

sbu062 2018-10-22 13:12 #77 Rev.: 7457

added touch target to be able to remake plain text on demand

3 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: Makefile (+3)

sbu062 2018-10-22 13:08 #76 Rev.: 7456

v2.4, few small fixes

7 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+7 -6)

sbu062 2018-10-22 12:55 #75 Rev.: 7455

v2.4, merged Sigrunn's changes with a few differences

240 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+240 -240)

cje012 2018-10-22 10:44 #74 Rev.: 7454

Fixed error in plot C1: It only had 4 x axis ticks, but this is now changed to 5 like the other plots.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk/Tools: camilla_paper1_plots.r (+2 -1)

cje012 2018-10-22 10:21 #73 Rev.: 7453

Changed the scale for the environment from 0-1, to the scale for ValueOfE. Scales with the max and minimim values from the ValueOfE binary file from the Hormone model.

67 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk/Tools: camilla_paper1_plots.r (+67 -28)

sbu062 2018-10-22 08:52 #72 Rev.: 7452

v2.3: Sigrunn's changes all to v2.3 (not v2.4)

255 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+255 -275)

cje012 2018-10-22 07:08 #71 Rev.: 7451

Minor change.

15 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: plotting.r (+15 -3)

sbu062 2018-10-21 11:54 #70 Rev.: 7450

v2.4, piece on temporal credit in sequential decisions

9 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+9 -2)

sbu062 2018-10-19 16:40 #69 Rev.: 7449

moved benchmarks to var

0 lines of code changed in 12 files:

• branches/budaev/TEST_BMK: README.md (del), bmk_gnu (del), bmk_gnu2 (del), bmk_ifort (del), bmk_ifort_fast (del), bmk_ifort_noheapnopar (del), bmk_ifort_nohostnopar (del), bmk_ifort_nopar (del), bmk_ifort_nostaticnopar (del), cpu_BIO195148 (del), cpu_aha-workshop-farm-001 (del), nas.f90 (del)

sbu062 2018-10-19 16:39 #68 Rev.: 7448

moved benchmark to var

0 lines of code changed in 4 files:

• branches/budaev/netlogo_benchmk/fortran: Makefile (del), bench.f90 (del)
• branches/budaev/netlogo_benchmk/nl: benchmk.nlogo (del), mod1.nlogo (del)

sbu062 2018-10-19 15:25 #67 Rev.: 7447

v2.4, small change

4 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+4 -4)

sbu062 2018-10-19 11:57 #66 Rev.: 7446

v2.4, small changes so far: strong need (=high arousal) requires fast decisions

9 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+8 -6)

cje012 2018-10-19 09:07 #65 Rev.: 7445

Minor change to two plots.

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk/Tools: plotting.r (+3 -3)

sbu062 2018-10-18 17:05 #64 Rev.: 7444

added testing and experimenting code, with environment variable setting module

0 lines of code changed in 1 file:

• branches/budaev/var/env_var: env_var_mod.f90 (new)

sbu062 2018-10-18 09:36 #63 Rev.: 7443

v2.3, integrated Jar's changes with some minor fixes

143 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+142 -209)

sbu062 2018-10-18 06:38 #62 Rev.: 7442

v2.2, Jarl's comments from email Wed, 17 Oct 2018 18:34:38 +0000

316 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+316 -222)

sbu062 2018-10-17 11:46 #61 Rev.: 7441

v2.2, additional small changes here and there

47 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+47 -124)

sbu062 2018-10-17 08:47 #60 Rev.: 7440

v2.2 micro-change after email release to team: fix address footnotes

1 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+1 -1)

sbu062 2018-10-16 14:32 #59 Rev.: 7439

v2.2, subtitles md-style formats

4 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+4)

sbu062 2018-10-16 14:28 #58 Rev.: 7438

v2.2, small additional changes

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+6 -10)

sbu062 2018-10-16 14:23 #57 Rev.: 7437

v2.2, fixed and shortened general discussion

20 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+20 -34)

sbu062 2018-10-16 13:46 #56 Rev.: 7436

v2.2, fixed evolutionary adaptation, general discussion only left

136 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+136 -154)

sbu062 2018-10-16 11:49 #55 Rev.: 7435

v2.2, rewroted first part

93 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+93 -85)

sbu062 2018-10-15 21:19 #54 Rev.: 7434

merged latest changes r7433 from the paper-FEE(origin)

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-bica: Makefile (+6 -4)

sbu062 2018-10-15 21:08 #53 Rev.: 7433

fixed target and doc paths

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: Makefile (+6 -4)

sbu062 2018-10-15 20:55 #52 Rev.: 7432

fix makefile

1 lines of code changed in 1 file:

• branches/budaev/papers/paper-bica: Makefile (+1 -1)

sbu062 2018-10-15 20:54 #51 Rev.: 7431

archived BICA supplement, v5.0

0 lines of code changed in 1 file:

• branches/budaev/papers/paper-bica: supplement.txt (new)

sbu062 2018-10-15 20:49 #50 Rev.: 7430

BICA v5.0 final version

267 lines of code changed in 1 file:

• branches/budaev/papers/paper-bica: paper.txt (+267 -268)

sbu062 2018-10-15 20:47 #49 Rev.: 7429

archived BICA paper, v4.0, latest odt text

974 lines of code changed in 2 files:

• branches/budaev/papers/paper-bica: Makefile (+5 -5), paper.txt (new 969)

sbu062 2018-10-15 20:40 #48 Rev.: 7428

makefile added from fee

5 lines of code changed in 1 file:

• branches/budaev/papers/paper-bica: Makefile (new 5)

sbu062 2018-10-15 14:36 #47 Rev.: 7426

v2.2, fix first note from JG: complex unpredictable environment goes to natural environment

24 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+24 -25)

cje012 2018-10-15 14:24 #46 Rev.: 7425

Added new plot with 4 plots: 1. O2~Environment 2. O2~environment & THF, 3. O2 mortality~environment & THF, 4. THF~environment & R_cat

14 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk/Tools: plotting.r (+14 -3)

sbu062 2018-10-15 14:21 #45 Rev.: 7424

v2.2, small fix from JG

2 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+2 -2)

sbu062 2018-10-15 14:01 #44 Rev.: 7423

v2.2, incorporated Jarl's changes to v2.0 from paper-frontiers-ecoevo-v2.0j

340 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+340 -260)

sbu062 2018-10-15 12:18 #43 Rev.: 7422

set master source wordprocessing file

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: Makefile (+6 -2)

sbu062 2018-10-15 11:21 #42 Rev.: 7421

Jarl's changes to v2.0

344 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+344 -366)

sbu062 2018-10-15 11:06 #41 Rev.: 7420

web: added link to inverse-based xmpp client in jwchat script main window

1 lines of code changed in 1 file:

• trunk/SVNSERVER/jwchat_www: index.html (+1)

sbu062 2018-10-15 08:32 #40 Rev.: 7419

v2.1, added short text and refs on metacognition

46 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+46 -17)

sbu062 2018-10-14 18:27 #39 Rev.: 7418

v2.1, added refs on intuitive probability in primates

20 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+20 -8)

sbu062 2018-10-14 17:06 #38 Rev.: 7417

v2.1, added ref

7 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+7 -3)

sbu062 2018-10-13 13:46 #37 Rev.: 7416

v2.1, fixed title from poll, added couple refs

11 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+11 -10)

sbu062 2018-10-13 13:33 #36 Rev.: 7415

v2.1, added refs to probabilistic representation in humans, causal reasoning in non-humans

44 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+2 -2), paper.txt (+42 -9)

sbu062 2018-10-12 14:04 #35 Rev.: 7414

set document path separately on Linux and Windows platforms

16 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: Makefile (+16 -2)

sbu062 2018-10-12 11:06 #34 Rev.: 7413

v2.0 of the FEE manuscript, added new abstract

22 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+21 -28)

sbu062 2018-10-12 07:20 #33 Rev.: 7412

v1.8 small changes, abstract still untouched

117 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+117 -106)

sbu062 2018-10-11 21:38 #32 Rev.: 7411

v1.8, generally close to new v2.0, abstract still not fixed

56 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+56 -63)

sbu062 2018-10-11 19:45 #31 Rev.: 7410

v1.8, deleted refs to enactive

25 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+25 -96)

sbu062 2018-10-11 19:18 #30 Rev.: 7409

added doc target

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: Makefile (+6)

sbu062 2018-10-11 19:12 #29 Rev.: 7408

v1.8, deleted predictive and enactive

9 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+9 -83)

sbu062 2018-10-11 19:07 #28 Rev.: 7407

v1.8, full information moved above heruristics

86 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+86 -69)

sbu062 2018-10-11 15:26 #27 Rev.: 7406

v1.8, changed Bayesian section

151 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+151 -81)

sbu062 2018-10-11 10:53 #26 Rev.: 7405

v1.8, deleted Marc's (i)..(iv)

9 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+9 -9)

sbu062 2018-10-11 10:52 #25 Rev.: 7404

v1.8, small fix

24 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+24 -24)

sbu062 2018-10-11 10:22 #24 Rev.: 7403

broader text 78 chars

1337 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+2 -2), paper.txt (+1335 -1639)

sbu062 2018-10-11 10:19 #23 Rev.: 7402

cancel r7401

1642 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+1641 -1335)

sbu062 2018-10-11 10:17 #22 Rev.: 7401

increased text width to 78 chars

1336 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+1335 -1641)

sbu062 2018-10-11 07:29 #21 Rev.: 7400

v1.8, small addition on rule-based systems

62 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+62 -27)

sbu062 2018-10-10 21:43 #20 Rev.: 7399

v1.8, additional small fixes

28 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+28 -26)

sbu062 2018-10-10 21:11 #19 Rev.: 7398

v1.8, added on evol-ecol paradigm and problems with the recipe-based animal models

84 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+84 -67)

sbu062 2018-10-10 18:11 #18 Rev.: 7397

v1.8, further small changes

26 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+26 -26)

sbu062 2018-10-10 17:50 #17 Rev.: 7396

further changes v1.8 mainly introduction

209 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+209 -161)

sbu062 2018-10-09 20:08 #16 Rev.: 7395

v 1.8. changed 1.7 without putting all of Marc's changes to 1.7, but fix introduction conception following Marc email

350 lines of code changed in 2 files:

• branches/budaev/papers/paper-frontiers: Makefile (+1 -1), paper.txt (+349 -366)

sbu062 2018-10-05 14:18 #15 Rev.: 7394

Marc Mangel's first round of changes, v1.7

269 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+269 -274)

sbu062 2018-10-05 12:24 #14 Rev.: 7393

formatting, basically to remove ^M

56 lines of code changed in 2 files:

• branches/budaev/xsend: xsend.py (+1 -1), xsendnc.py (+55 -55)

sbu062 2018-10-05 12:21 #13 Rev.: 7392

set executable

1 lines of code changed in 1 file:

• branches/budaev/xsend: xsendnc.py (+1)

sbu062 2018-10-05 12:18 #12 Rev.: 7391

added two versions of xsend.py, props set

84 lines of code changed in 2 files:

• branches/budaev/xsend: xsend.py (new 65), xsendnc.py (+19 -7)

sbu062 2018-10-05 12:06 #11 Rev.: 7390

added simple xmpp sending util xsend.py

42 lines of code changed in 1 file:

• branches/budaev/xsend: xsendnc.py (new 42)

sbu062 2018-10-04 10:49 #10 Rev.: 7389

added sentences on future-thinking in animals

31 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+31 -7)

sbu062 2018-10-03 13:25 #9 Rev.: 7388

trac: last changes in config, poll macro and testing repo

11 lines of code changed in 1 file:

• trunk/SVNSERVER/config/trac_prj/TEG_CODES/conf: trac.ini (+11 -3)

sbu062 2018-10-02 11:42 #8 Rev.: 7387

changed title

3 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+3 -3)

sbu062 2018-10-02 10:43 #7 Rev.: 7386

Steve Railsback fix for the benchmark, email Tue, 18 Sep 2018 22:12:41 +0200

12 lines of code changed in 1 file:

• branches/budaev/netlogo_benchmk/nl: benchmk.nlogo (+12 -5)

sbu062 2018-10-01 17:44 #6 Rev.: 7385

small fix

6 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+6 -6)

sbu062 2018-10-01 14:59 #5 Rev.: 7384

discussiion of global workspace

10 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+10 -5)

sbu062 2018-10-01 14:38 #4 Rev.: 7383

another small change

33 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+33 -21)

sbu062 2018-10-01 14:23 #3 Rev.: 7382

this change responds to Sigrunn's question in intruduction:: In behavioural ecology this is not an explicit assumption, or?

4 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+4 -3)

sbu062 2018-10-01 10:56 #2 Rev.: 7381

small fix

3 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+3 -2)

sbu062 2018-10-01 08:28 #1 Rev.: 7380

paragraph on recurrent networks

23 lines of code changed in 1 file:

• branches/budaev/papers/paper-frontiers: paper.txt (+23 -1)

September 2018 »