January 2018 Commit Log

Number of Commits:
127
Number of Active Developers:
4
sbu062 2018-01-29 12:25 Rev.: 6919

forgot stop instruction

1 lines of code changed in 1 file:

sbu062 2018-01-29 12:22 Rev.: 6918

check errors in value

13 lines of code changed in 1 file:

sbu062 2018-01-29 12:13 Rev.: 6917

increase maximum limit

1 lines of code changed in 1 file:

sbu062 2018-01-29 12:02 Rev.: 6916

titles for readability of comments

4 lines of code changed in 1 file:

cje012 2018-01-29 10:24 Rev.: 6915

Replaced E_real with E_cat in forwards, except for when the environments is initialised and when new environments are calculated: Here we use E_real but on the next line it is transformed into an integer and saved in E_cat.

14 lines of code changed in 1 file:

sbu062 2018-01-28 17:18 Rev.: 6914

svn keywords

3 lines of code changed in 3 files:

sbu062 2018-01-28 17:17 Rev.: 6913

fix examples and better output

3 lines of code changed in 1 file:

sbu062 2018-01-28 17:09 Rev.: 6912

added more examples

7 lines of code changed in 1 file:

sbu062 2018-01-28 14:49 Rev.: 6911

merged r6909 to all models

4 lines of code changed in 4 files:

sbu062 2018-01-28 14:46 Rev.: 6910

small change as in main

3 lines of code changed in 1 file:

sbu062 2018-01-28 14:46 Rev.: 6909

was no rebuild if driver code is modified

1 lines of code changed in 1 file:

sbu062 2018-01-27 21:56 Rev.: 6908

header doc info was forgotten

8 lines of code changed in 1 file:

sbu062 2018-01-27 21:50 Rev.: 6907

helper doc, main driver placed to dependencies of obj target

28 lines of code changed in 2 files:

sbu062 2018-01-27 20:17 Rev.: 6906

aha constants module separated into a file

84 lines of code changed in 3 files:

sbu062 2018-01-27 20:05 Rev.: 6905

deleted unit tests from utils

0 lines of code changed in 1 file:

sbu062 2018-01-27 19:56 Rev.: 6904

correct ifort options typo, -heap-arrays restored, xHost deleted

4 lines of code changed in 1 file:

sbu062 2018-01-27 19:48 Rev.: 6903

xHost deleted as executable cannot run on herring with hardware error:

2 lines of code changed in 1 file:

sbu062 2018-01-27 19:44 Rev.: 6902

update makefile from main

286 lines of code changed in 1 file:

sbu062 2018-01-27 16:30 Rev.: 6901

small changes

5 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6900

added MISSING onstant; avoid repeated allocation and deallocation of distance array

14 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6899

tidy up code

28 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6898

started writing output distance data

9 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6897

calculate distance done

26 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6896

continue adding outputs

4 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6895

started adding output to distance parsing utility

49 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6894

rename template

2 lines of code changed in 1 file:

sbu062 2018-01-27 16:29 Rev.: 6893

added utils folder and makefile

883 lines of code changed in 3 files:

sbu062 2018-01-27 10:08 Rev.: 6892

renamed (readline) to (getfline) from BASE_STRINGS to avoid conflict with more powerful and much used (readline) in CSV_IO

13 lines of code changed in 2 files:

cje012 2018-01-26 11:52 Rev.: 6891

Fixed error in forward and backwards, forgot to add -1 to calculations of reserves in backwards and in the initiation of forward.

6 lines of code changed in 1 file:

sbu062 2018-01-25 23:00 Rev.: 6890

web: fix link to binary build for intel

2 lines of code changed in 1 file:

sbu062 2018-01-25 22:45

doc merge latest doc fix

3 lines of code changed in 3 files:

sbu062 2018-01-25 20:19 Rev.: 6887

doc: small update

3 lines of code changed in 1 file:

sbu062 2018-01-25 18:30 Rev.: 6885

(CSV_MATRIX_READ): bug fix, wrong reading if empty data occurred with two consecutive commas, merged from work branch

8 lines of code changed in 1 file:

sbu062 2018-01-25 18:26 Rev.: 6884

web: links to updated binary builds of hedtools, bug fix r.6883

2 lines of code changed in 1 file:

sbu062 2018-01-25 18:14 Rev.: 6883

(CSV_MATRIX_READ_R8): check empty string missing data in the middle of a numeric row, copied from kind4 function

4 lines of code changed in 1 file:

sbu062 2018-01-25 18:14 Rev.: 6882

(CSV_MATRIX_READ_R4): deleted testing code

0 lines of code changed in 1 file:

sbu062 2018-01-25 18:14 Rev.: 6881

(CSV_MATRIX_READ_R4): check empty strings, missing data in the middle of a numeric row, testing code

5 lines of code changed in 1 file:

cje012 2018-01-24 15:05 Rev.: 6880

Added _RP to reals

1 lines of code changed in 1 file:

cje012 2018-01-24 15:01 Rev.: 6879

Fixed minor error in the printing in backwards, forgot to remove one +1

1 lines of code changed in 1 file:

nzlcj 2018-01-24 14:45 Rev.: 6878

Coded together - changed maxcategories with one value so it makes sense. Renamed G to Gh.

6 lines of code changed in 1 file:

nzlcj 2018-01-24 14:45 Rev.: 6877

Coded together - changed autocorrelatedE - extreme values allowed increased by half a category.

3 lines of code changed in 1 file:

nzlcj 2018-01-24 14:43 Rev.: 6876

Coded together - changed maxcategories with one value so it makes sense. Renamed G to Gh.

35 lines of code changed in 1 file:

tla051 2018-01-24 13:51

twilight values as parameters -> input to qsw0() and for reflection calculations in main code

28 lines of code changed in 2 files:

tla051 2018-01-24 13:39 Rev.: 6873

code cleaned up

8 lines of code changed in 1 file:

tla051 2018-01-24 13:39 Rev.: 6872

- modified to allow latitude input in decimal degrees
- cleaned up confusion with write to .bin files

23 lines of code changed in 1 file:

sbu062 2018-01-23 12:38 Rev.: 6871

web: workaround described

2 lines of code changed in 1 file:

sbu062 2018-01-23 12:34 Rev.: 6870

(execute_command_line): workaround against intel compiler bug in execute_command_line, appending C_NULL_CHAR from ISO_C_BINDING

40 lines of code changed in 5 files:

cje012 2018-01-23 12:17 Rev.: 6869

Minor change in old function that is no longer used by default.

10 lines of code changed in 1 file:

cje012 2018-01-23 12:16 Rev.: 6868

Minor change to comments.

2 lines of code changed in 1 file:

sbu062 2018-01-23 12:13 Rev.: 6867

update on intel bug, jim's workaround

22 lines of code changed in 1 file:

sbu062 2018-01-22 14:17 Rev.: 6866

set correct storage server path: stage4-run

5 lines of code changed in 5 files:

sbu062 2018-01-22 14:05 Rev.: 6865

zipsend target to send

110 lines of code changed in 5 files:

tla051 2018-01-22 13:57 Rev.: 6864

before lat_max and lat_min changed to real to allow to loop over latitudes in decimal degrees

16 lines of code changed in 1 file:

sbu062 2018-01-22 09:10 Rev.: 6863

better processing of zip data files

200 lines of code changed in 5 files:

sbu062 2018-01-21 13:11 Rev.: 6862

enable AddressSanitizer, a fast runtime memory error detector and static link with sanitiser library

5 lines of code changed in 5 files:

tla051 2018-01-18 18:35 Rev.: 6861

version 18.01.2018

72 lines of code changed in 1 file:

tla051 2018-01-18 18:17 Rev.: 6860

version 17.10.2018

76 lines of code changed in 1 file:

sbu062 2018-01-16 19:24 Rev.: 6859

christian's corrections

3 lines of code changed in 2 files:

sbu062 2018-01-16 18:42 Rev.: 6858

more targets

10 lines of code changed in 1 file:

cje012 2018-01-16 15:35 Rev.: 6857

Plotting file for combining the ind.bin files of a simulation with a static and stochastic environment, both generated using the stochastic hormone model.

6 lines of code changed in 1 file:

sbu062 2018-01-16 14:56 Rev.: 6856

fix ΓΈ

1 lines of code changed in 1 file:

sbu062 2018-01-16 14:37 Rev.: 6855

oyvind requested removal from authors

1 lines of code changed in 1 file:

sbu062 2018-01-16 14:32 Rev.: 6854

some of the oyvind's changes

22 lines of code changed in 1 file:

sbu062 2018-01-16 13:56 Rev.: 6853

final changes for today

2 lines of code changed in 1 file:

cje012 2018-01-16 13:53 Rev.: 6852

Fixed small error in a test plot.

4 lines of code changed in 1 file:

sbu062 2018-01-16 13:47 Rev.: 6851

sb further changes

13 lines of code changed in 1 file:

sbu062 2018-01-16 13:36 Rev.: 6850

Sigrunn's modifications

30 lines of code changed in 1 file:

sbu062 2018-01-16 09:53 Rev.: 6849

escape for asterisk

1 lines of code changed in 1 file:

sbu062 2018-01-16 09:28 Rev.: 6848

abridging

23 lines of code changed in 1 file:

sbu062 2018-01-16 09:19

abridging

43 lines of code changed in 2 files:

sbu062 2018-01-16 09:04 Rev.: 6845

intro updated

10 lines of code changed in 1 file:

sbu062 2018-01-15 20:29 Rev.: 6844

added pdf target

4 lines of code changed in 1 file:

sbu062 2018-01-15 20:23 Rev.: 6843

docx build makefile

1 lines of code changed in 1 file:

sbu062 2018-01-15 19:13 Rev.: 6842

edits i buss

23 lines of code changed in 1 file:

sbu062 2018-01-15 16:19 Rev.: 6841

save before leaving

6 lines of code changed in 1 file:

sbu062 2018-01-15 16:13 Rev.: 6840

authors

2 lines of code changed in 1 file:

sbu062 2018-01-15 16:11 Rev.: 6839

abridge intro

4 lines of code changed in 1 file:

sbu062 2018-01-15 16:06 Rev.: 6838

minor fix

1 lines of code changed in 1 file:

sbu062 2018-01-15 16:06 Rev.: 6837

title doesn't render in pandoc

1 lines of code changed in 1 file:

sbu062 2018-01-15 16:02 Rev.: 6836

results added

5 lines of code changed in 1 file:

sbu062 2018-01-15 15:29 Rev.: 6835

reorganized into dir

45 lines of code changed in 2 files:

sbu062 2018-01-15 15:28 Rev.: 6834

abstract for digital life conference

0 lines of code changed in 2 files:

cje012 2018-01-15 10:41 Rev.: 6833

Added plot with survival against environment.

8 lines of code changed in 1 file:

cje012 2018-01-15 10:40 Rev.: 6832

Updated with parameters from one of the best parameter runs from 2017.

28 lines of code changed in 1 file:

tla051 2018-01-15 07:51 Rev.: 6831

respiration changed from Hewett & Johnson 1992 to Davison et al. 2013, eq. 1 | doi: 10.1016/j.pocean.2013.05.013

128 lines of code changed in 1 file:

sbu062 2018-01-09 11:34 Rev.: 6830

re-run reports in batch mode

15278 lines of code changed in 3 files:

cje012 2018-01-09 10:21 Rev.: 6829

Added the new repo adress

1 lines of code changed in 1 file:

sbu062 2018-01-09 09:19 Rev.: 6828

saved quality report from fpt v.4.0

1534 lines of code changed in 2 files:

tla051 2018-01-08 13:10 Rev.: 6827

twilight interpolation simplified to one equation for the range of 0 to -18 degrees solar elevation

12 lines of code changed in 1 file:

tla051 2018-01-08 12:43 Rev.: 6826

twilight calculations changed to interpolate log values

24 lines of code changed in 1 file:

nzlcj 2018-01-08 12:24 Rev.: 6825

Coded together. Added state for reserves - code needs to be cleaned and debugged. Something is wrong with consumption being 1600 times higher than SMR.

39 lines of code changed in 1 file:

tla051 2018-01-08 10:04 Rev.: 6824

moved light calculations out of the length loop

37 lines of code changed in 1 file:

nzlcj 2018-01-08 09:03 Rev.: 6823

Coded together, Some comments, some homework, some decimal points.

13 lines of code changed in 1 file:

tla051 2018-01-08 07:41

eye sensitivity modified, now one value for pisicivores

47 lines of code changed in 2 files:

sbu062 2018-01-05 14:58 Rev.: 6820

return normal self-predictive behaviour

1 lines of code changed in 1 file:

sbu062 2018-01-05 14:55 Rev.: 6819

return normal progressive time steps

1 lines of code changed in 1 file:

sbu062 2018-01-05 14:52 Rev.: 6818

run C4: GOS-linked (no predict) behaviour, random migration, fixed time steps

1 lines of code changed in 1 file:

sbu062 2018-01-05 14:44 Rev.: 6817

run C3: GOS-linked (no predict) behaviour, random migration, normal progressive time steps

2 lines of code changed in 2 files:

sbu062 2018-01-05 14:33 Rev.: 6816

(behaviour_select_fixed_from_gos): added random migration across available habitats in TRY_MIGRATE block:: backported from 04 rev. 6813-6815

117 lines of code changed in 3 files:

sbu062 2018-01-05 14:14 Rev.: 6815

reset normal (do_behave)

1 lines of code changed in 1 file:

sbu062 2018-01-05 14:13 Rev.: 6814

(behaviour_select_fixed_from_gos): portable procedure for any size of Global_Habitats_Available

28 lines of code changed in 1 file:

sbu062 2018-01-05 14:13 Rev.: 6813

(behaviour_select_fixed_from_gos): added random migration across available habitats in TRY_MIGRATE block

25 lines of code changed in 1 file:

sbu062 2018-01-05 13:00 Rev.: 6812

(behaviour_select_fixed_from_gos): behaviour selection procedure rigidly linked with specific GOS, backported revs. 6705-6707 from 04

372 lines of code changed in 3 files:

sbu062 2018-01-05 12:30 Rev.: 6811

(migrate_random):: implemented random stochastic migration, backported revs 6808-6810 from 04

608 lines of code changed in 9 files:

sbu062 2018-01-05 12:15 Rev.: 6810

(migrate_random):: fix execution of cost of movement code

6 lines of code changed in 1 file:

sbu062 2018-01-05 12:15 Rev.: 6809

(migrate_random):: converted to logical function

11 lines of code changed in 1 file:

sbu062 2018-01-05 12:15 Rev.: 6808

(migrate_random):: implemented random stochastic migration

143 lines of code changed in 2 files:

sbu062 2018-01-04 12:24 Rev.: 6807

doc: latex scheme reduced

5 lines of code changed in 5 files:

sbu062 2018-01-04 12:19

doc: svn scheme smaller

40 lines of code changed in 5 files:

sbu062 2018-01-04 12:16 Rev.: 6801

doc: ref to cognitive architecture

5 lines of code changed in 5 files:

sbu062 2018-01-04 12:12 Rev.: 6800

doc: added reference to attention weighting

30 lines of code changed in 5 files:

sbu062 2018-01-04 12:03

doc: attention weighting scheme

50935 lines of code changed in 15 files:

sbu062 2018-01-04 10:30 Rev.: 6794

doc: small fix link

5 lines of code changed in 5 files:

sbu062 2018-01-04 10:16 Rev.: 6793

doc: added link to (attention_init)

15 lines of code changed in 6 files:

sbu062 2018-01-04 10:03 Rev.: 6792

doc: small fix, was wrong autolink

5 lines of code changed in 5 files:

sbu062 2018-01-03 05:35 Rev.: 6791

(disassemble) can now accept a single (array rank 1) habitat object: backported from 05 r6764

20 lines of code changed in 4 files:

sbu062 2018-01-02 14:11 Rev.: 6790

compress patch files into final model zip

10 lines of code changed in 7 files:

sbu062 2018-01-02 11:35 Rev.: 6789

minor change

12 lines of code changed in 1 file:

tla051 2018-01-02 08:52 Rev.: 6788

reflection at the air-water interface included

126 lines of code changed in 1 file:

tla051 2018-01-02 08:52 Rev.: 6787

reflection at air-water interface included

64 lines of code changed in 1 file:

sbu062 2018-01-02 07:58 Rev.: 6785

update rev no

1 lines of code changed in 1 file:

sbu062 2018-01-01 13:52 Rev.: 6781

small fix

2 lines of code changed in 1 file:

sbu062 2018-01-01 13:51 Rev.: 6780

info ref to svn book

2 lines of code changed in 1 file:

sbu062 2018-01-01 13:47 Rev.: 6779

more info on releases

14 lines of code changed in 1 file:

sbu062 2018-01-01 13:40 Rev.: 6778

added readme for tags

5 lines of code changed in 1 file:

sbu062 2018-01-01 12:59 Rev.: 6772

tests: tolerance reset in terms of s.e. of mean depth, adapted for arbitrary variability in vertical migration pattern; tests could be broken if prey distribution variability was reset, now tolerance is dynamic

135 lines of code changed in 9 files:

sbu062 2018-01-01 11:12 Rev.: 6771

rename module with float functions and operator to REAL_OPERAT

6 lines of code changed in 1 file:

December 2017 »

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