March 2019 Commit Log

Number of Commits:
97
Number of Active Developers:
5
sbu062 2019-03-25 23:41 Rev.: 8086

system: bat utility to one-way synchronise V drive with TEG webdav, for SELF/CRANES project

7 lines of code changed in 1 file:

cje012 2019-03-25 08:10 Rev.: 8085

Minor change to folder names when saving.

2 lines of code changed in 1 file:

cje012 2019-03-25 08:06 Rev.: 8084

Minor change to filenames when saving.

2 lines of code changed in 1 file:

sbu062 2019-03-22 17:53 Rev.: 8083

web: added downloads in upper site menu

9 lines of code changed in 2 files:

cje012 2019-03-22 16:13 Rev.: 8082

Small bugfix.

1 lines of code changed in 1 file:

cje012 2019-03-22 13:18 Rev.: 8081

Completly changed to plot in a similar fashion to the stochastic versions of the model.

301 lines of code changed in 1 file:

cje012 2019-03-22 13:17 Rev.: 8080

Updated to reflect changes in the other versions of the model

48 lines of code changed in 1 file:

sbu062 2019-03-22 12:05 Rev.: 8079

config: tweaks for performance from herring

3 lines of code changed in 1 file:

sbu062 2019-03-22 11:59 Rev.: 8078

config: default configs from ubuntu

139 lines of code changed in 2 files:

cje012 2019-03-22 09:14 Rev.: 8076

added propset

2 lines of code changed in 1 file:

cje012 2019-03-22 08:55

Updated to the version in the binary_IO trunk with some small tweaks so it will work with the hormone model.

0 lines of code changed in 4 files:

cje012 2019-03-22 08:47

Updated to the version in the binary_IO trunk with some small tweaks so it will work with the hormone model.

646 lines of code changed in 3 files:

jwe041 2019-03-21 12:57 Rev.: 8070

unchanged

0 lines of code changed in 2 files:

sbu062 2019-03-20 21:22 Rev.: 8069

FEE v.3.6.6, manual fixes for refs:
- Graves, etc. !ArXiv 1410.5401
- Psychopharmacology (Berl).

4 lines of code changed in 1 file:

sbu062 2019-03-20 21:16 Rev.: 8068

FEE v.3.6.6, fixed refs, page numbers
Note: broken refs, to be fixed manually:
- Graves, etc. ArXiv 1410.5401
- Psychopharmacology (Berl).

16 lines of code changed in 1 file:

sbu062 2019-03-20 19:50 Rev.: 8067

FEE v.3.6.6. better ref

16 lines of code changed in 1 file:

sbu062 2019-03-20 15:51 Rev.: 8066

FEE v.3.6.6. added fixes, mostly comma

18 lines of code changed in 1 file:

sbu062 2019-03-20 15:06 Rev.: 8065

updated ms version, it is 3.6.6. from r8061

1 lines of code changed in 1 file:

sbu062 2019-03-20 15:05 Rev.: 8064

FEE v.3.6.6: final small fixes mainly forgotten or overlooked

45 lines of code changed in 1 file:

sbu062 2019-03-20 14:48 Rev.: 8063

FEE v.3.6.6: incorporated JG and CJ fixes from r8062 3.6.5

173 lines of code changed in 1 file:

sbu062 2019-03-20 14:40 Rev.: 8062

FEE v.3.6.5, changes suggested by JG and CJ in paper-frontiers-ecoevo-v3.6.5 jg_cj.docx

267 lines of code changed in 1 file:

sbu062 2019-03-20 12:54 Rev.: 8061

FEE v.3.6.6, JG's small fixes from paper-frontiers-ecoevo-v3.6.5 jg.docx

37 lines of code changed in 1 file:

sbu062 2019-03-20 07:49 Rev.: 8060

FEE v.3.6.5, small fix

2 lines of code changed in 1 file:

sbu062 2019-03-19 23:04 Rev.: 8059

FEE v.3.6.5, minor wording fix

1 lines of code changed in 1 file:

sbu062 2019-03-19 22:40 Rev.: 8058

FEE v.3.6.5, incorporated Christian's changes, with some further fixes and changes

302 lines of code changed in 1 file:

sbu062 2019-03-19 21:33 Rev.: 8057

web: small fix format

1 lines of code changed in 1 file:

sbu062 2019-03-19 21:30 Rev.: 8056

web: format fix

3 lines of code changed in 1 file:

sbu062 2019-03-19 21:24

web: format fix

11 lines of code changed in 3 files:

sbu062 2019-03-19 21:18 Rev.: 8052

web: more formatting landing page text

16 lines of code changed in 1 file:

sbu062 2019-03-19 18:55 Rev.: 8051

FEE v.3.6.3, CJ's wordsmithing from paper-frontiers-ecoevo-v3.6.2 and 3 combined_cj.docx
**rule** as a generic concept is not equated to lookup table, **fixed rule**
is not much better.

290 lines of code changed in 1 file:

sbu062 2019-03-19 15:37 Rev.: 8050

FEE v.3.6.4, fixes for Sigrunn's latest changes + JG paper-based

107 lines of code changed in 1 file:

sbu062 2019-03-19 15:08 Rev.: 8049

FEE v.3.6.3, SE changes and notes from paper-frontiers-ecoevo-v3.6.3_Se.docx

73 lines of code changed in 1 file:

sbu062 2019-03-18 21:45 Rev.: 8048

web: auto-join mucs

1 lines of code changed in 1 file:

sbu062 2019-03-18 20:11 Rev.: 8047

web: updated xmpp to converse.js v4.1.2

26 lines of code changed in 1 file:

sbu062 2019-03-18 19:00 Rev.: 8046

FEE v.3.6.3, minor fixes

2 lines of code changed in 1 file:

sbu062 2019-03-18 18:49 Rev.: 8045

FEE v.3.6.3, incorporated MM & JG comments from r8044 with some changes, doi are back in references

415 lines of code changed in 1 file:

sbu062 2019-03-18 18:43 Rev.: 8044

FEE v.3.6.2, incorporated Marc and Jarl's wordsmithing

255 lines of code changed in 1 file:

cje012 2019-03-18 12:50 Rev.: 8043

Updated the parameters.

2 lines of code changed in 1 file:

cje012 2019-03-18 12:45 Rev.: 8042

Many changes to plot. The main difference is that now only 4 lines are plotted to virulence level 0.00, 0.25, 0.50 and 0.75, the lines have predefined colours and no longer uses the colours from the colourblind library. The lines now also have different line types (solid, dotted).

120 lines of code changed in 1 file:

cje012 2019-03-18 12:41 Rev.: 8041

Minor change

1 lines of code changed in 1 file:

cje012 2019-03-18 12:41 Rev.: 8040

Made new function %not.in%, which has the oposite function of using %in%.

3 lines of code changed in 1 file:

cje012 2019-03-18 12:38 Rev.: 8039

Minor change.

1 lines of code changed in 1 file:

cje012 2019-03-18 12:34 Rev.: 8038

Changed OXF_inc to 1._RP+(2._RP/3._RP), so new OXF_max is 2500

1 lines of code changed in 1 file:

cje012 2019-03-18 12:33 Rev.: 8037

Changed OXF_inc to 1._RP+(2._RP/3._RP)

1 lines of code changed in 1 file:

cje012 2019-03-14 10:24 Rev.: 8036

FigureB c and d is no longer used boxplot for the representation of the data, but a line for the median, a range for the 25-75% and 0-100% of the populations from the different simulations.

11 lines of code changed in 1 file:

cje012 2019-03-14 10:21 Rev.: 8035

Small change in the import.spesific.data function: Instead of just printing individual 1 at timestep 1 the first six simulation results, it now prints individual 1 at timestep 1 for all the imported simulation results. This is done to make it easier to check visually that every file (and not the first six) are imported correcly.

2 lines of code changed in 1 file:

sbu062 2019-03-13 13:02 Rev.: 8034

FEE v.3.6.2, further abridging by SB, taking account of SJ r8033

249 lines of code changed in 1 file:

sbu062 2019-03-13 12:48 Rev.: 8033

FEE v.3.6: Shristian's abridgin from paper-frontiers-ecoevo-v3.6_cj.docx

201 lines of code changed in 1 file:

sbu062 2019-03-12 10:00 Rev.: 8032

FEE v.3.6: small abridging

8 lines of code changed in 1 file:

sbu062 2019-03-12 09:56 Rev.: 8031

FEE v.3.6, merged CJ's changes that reduce word count, more abridgings

304 lines of code changed in 2 files:

sbu062 2019-03-12 09:44 Rev.: 8030

FEE v.3.5.1, Christian's suggested changes in paper-frontiers-ecoevo-v3.5.1_cj2.docx

369 lines of code changed in 1 file:

cje012 2019-03-11 13:58 Rev.: 8029

Made an aternative to FigureB c) and d).

28 lines of code changed in 1 file:

cje012 2019-03-08 10:30 Rev.: 8027

(*) Added limits for environment and ValueOfE
(*) Improvements to Figure A, B, C and D, both graphical and how data is selected and organised
(*) Added a new Figure E, that plots the different hormone function level sin the different environments at about 20 cm.

113 lines of code changed in 1 file:

sbu062 2019-03-08 08:38 Rev.: 8026

cleanup: checked and fixed inconsistent usage of real kind
changed kind=8 to private parameter defined via standard `selected_real_kind` function:
{{{
integer, parameter, private :: S_PREC_32 = selected_real_kind( 6, 37)
integer, parameter, private :: D_PREC_64 = selected_real_kind(15, 307)
integer, parameter, private :: Q_PREC_128 = selected_real_kind(33, 4931)
}}}

181 lines of code changed in 4 files:

sbu062 2019-03-08 08:32 Rev.: 8025

cleanup: extra comma after io-control-spec-list in READ/WRITE statements is non-standard syntax

10 lines of code changed in 1 file:

sbu062 2019-03-07 14:29 Rev.: 8024

updated binary_IO
Changes:
- `FIX_FOLDER` (renamed `folder`) is now a module variable (not fixed parameter), allowing to set it whenever the module used (e.g. within the program itself), so binary_io doesn't need user changes.
- I made another module `posix_fs.f90` (it is just an interface to standard C library calling standard OS-level commends, with little Fortran code) that allows to make or delete file/folder. This solves the possible issue when the `folder` does not exist and program crashes.
- The behaviour and the messages produced by binary_IO with mismatched /non-conforming arrays were confusing, so now I added the code that checks if the rank of the array as saved in the file conforms the output array as passed to the `binary_to_array` procedure

777 lines of code changed in 4 files:

jwe041 2019-03-07 10:44 Rev.: 8023

2 lines of code changed in 1 file:

sbu062 2019-03-07 09:44 Rev.: 8022

get rid of (error_wrong_rank), place bolierplate code inside
This is because (error_wrong_rank) cannot be isolated and moved
into a module-wise procedure since it calls if present(error) for
optional argument, deleting extra inner proc simplifies code

75 lines of code changed in 1 file:

cje012 2019-03-07 09:32 Rev.: 8021

Changed FigureA so it now plots foraging required instead of weight.

10 lines of code changed in 1 file:

sbu062 2019-03-06 22:48 Rev.: 8020

more informative messages

2 lines of code changed in 1 file:

sbu062 2019-03-06 22:47 Rev.: 8019

test error condition , array rank mismatch

13 lines of code changed in 1 file:

sbu062 2019-03-06 22:46 Rev.: 8018

added checking array rank mismatch data in file versus input array

191 lines of code changed in 1 file:

sbu062 2019-03-06 14:42 Rev.: 8017

compiler command for test program

3 lines of code changed in 1 file:

sbu062 2019-03-06 14:34 Rev.: 8016

additional note on allocatable FIX_FOLDER

4 lines of code changed in 1 file:

sbu062 2019-03-06 14:21 Rev.: 8015

additional note on FIX_FOLDER

2 lines of code changed in 1 file:

sbu062 2019-03-06 14:16 Rev.: 8014

additional note

3 lines of code changed in 1 file:

sbu062 2019-03-06 14:12 Rev.: 8013

small reformats and fixes

42 lines of code changed in 3 files:

sbu062 2019-03-06 13:48 Rev.: 8012

set svn props

4 lines of code changed in 1 file:

sbu062 2019-03-06 13:46 Rev.: 8011

FIX_FOLDER redefined as public variable
This makes it possible to set the data folder in the program(s) that
that use the binary_IO on the individual basis

4 lines of code changed in 1 file:

sbu062 2019-03-06 13:44 Rev.: 8010

test program for binary_IO module

87 lines of code changed in 1 file:

sbu062 2019-03-06 13:44 Rev.: 8009

module to call C functions for maniputating filesystem
copied from HEDTOOLS CSV_IO, make directory, delete files

291 lines of code changed in 1 file:

sbu062 2019-03-06 11:51 Rev.: 8008

fix test program within the code
The opld version used obsolete functions, the new uses only subroutines
with assumed sshape array to force specific array size/dimensionality

19 lines of code changed in 1 file:

sbu062 2019-03-06 10:52 Rev.: 8007

svn server path updated from old uib

1 lines of code changed in 1 file:

sbu062 2019-03-06 10:50 Rev.: 8006

small reformats and propset

6 lines of code changed in 2 files:

sbu062 2019-03-06 10:47 Rev.: 8005

rename m_numbers.f90 m_realcalc.f90
`m_realcalc.f90` seems a more logical name for the module because it
aims at working with **real** type

150 lines of code changed in 2 files:

sbu062 2019-03-06 10:44 Rev.: 8004

prepare devel environment for fixing binary_io

0 lines of code changed in 3 files:

sbu062 2019-03-06 08:08 Rev.: 8002

FEE v.3.5.1, delete doi's
regular expression `doi:.*`

88 lines of code changed in 1 file:

sbu062 2019-03-06 08:02 Rev.: 8001

FEE v.3.5, fix ref

2 lines of code changed in 1 file:

sbu062 2019-03-06 07:49 Rev.: 8000

FEE v.3.5, deleted refs on insect attentio, we do not have space

164 lines of code changed in 1 file:

sbu062 2019-03-05 15:22 Rev.: 7999

make moved to rev. 3.5

1 lines of code changed in 1 file:

sbu062 2019-03-05 15:21 Rev.: 7998

FEE v.3.5.1, deleted doi from refs
with regular expression `doi:.*`

91 lines of code changed in 1 file:

cje012 2019-03-05 15:14 Rev.: 7997

Small bug in FigureB code

2 lines of code changed in 1 file:

cje012 2019-03-05 15:09 Rev.: 7996

Many changes to FigureB

108 lines of code changed in 1 file:

sbu062 2019-03-05 15:07 Rev.: 7995

FEE v.3.5, obsolete ref

19 lines of code changed in 1 file:

sbu062 2019-03-05 14:58 Rev.: 7994

FEE v.3.5, fix hanging refs remains

1 lines of code changed in 1 file:

sbu062 2019-03-05 14:53 Rev.: 7993

FEE v.3.5, further text abridging, especially general discussion

105 lines of code changed in 1 file:

sbu062 2019-03-05 14:09 Rev.: 7992

FEE v.3.4, reduced more refs

179 lines of code changed in 1 file:

cje012 2019-03-05 07:10 Rev.: 7991

Added alpha to lines in Figure C.

2 lines of code changed in 1 file:

sbu062 2019-03-04 22:42 Rev.: 7990

FEE v.3.4, started reducing references

164 lines of code changed in 2 files:

sbu062 2019-03-04 21:07 Rev.: 7989

FEE v.3.3, fix refs

11 lines of code changed in 1 file:

cje012 2019-03-04 15:03 Rev.: 7988

Major update. Made many changes to the plots and added new ones.

366 lines of code changed in 1 file:

sbu062 2019-03-04 13:42 Rev.: 7987

FEE v.3.3, added SB changes in Oslo, some concide with JS's

26 lines of code changed in 2 files:

sbu062 2019-03-04 13:39 Rev.: 7986

FEE v.3.2, incorporated Jarl's paper-frontiers-ecoevo-v3.1.2 jarl.docx with some small changes

121 lines of code changed in 1 file:

sbu062 2019-03-04 13:29 Rev.: 7985

FEE v.3.1.2, Jarl's changes over weekend

209 lines of code changed in 1 file:

cje012 2019-03-04 08:35 Rev.: 7984

Parsite virulence/plvl is no longer transformed to a numeric but stays as a character.

1 lines of code changed in 1 file:

nzlcj 2019-03-01 12:50 Rev.: 7983

Coded together, fixed bug for paternities, added writing of data for heritability, added time to ind array to export full population trajectory to R.

44 lines of code changed in 1 file:

lhi088 2019-03-01 11:21 Rev.: 7982

added comments and added double precision

124 lines of code changed in 2 files:

February 2019 »

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