October 2020 Commit Log

Number of Commits:
123
Number of Active Developers:
2
sbu062 2020-10-31 19:29 Rev.: 9963

more plots

18 lines of code changed in 1 file:

sbu062 2020-10-31 17:05 Rev.: 9962

started to add drop-down menues for plots

18 lines of code changed in 1 file:

sbu062 2020-10-31 11:32 Rev.: 9961

added menu item dropdown for graphics

11 lines of code changed in 1 file:

sbu062 2020-10-30 22:51 Rev.: 9960

doc: doxygen docs updated and fixed

60 lines of code changed in 1 file:

sbu062 2020-10-29 21:49 Rev.: 9959

debug write code deleted

0 lines of code changed in 1 file:

sbu062 2020-10-29 21:47 Rev.: 9958

`midgut_maxdur` now in min, counts time from full absorption

14 lines of code changed in 6 files:

sbu062 2020-10-29 14:26 Rev.: 9957

added `time_absorbed` data component for duration of the time the food item was in the midgut plus counter

18 lines of code changed in 1 file:

sbu062 2020-10-29 13:03 Rev.: 9956

need only one tolerance parameter, `MIN_VOL_TOLER`

2 lines of code changed in 2 files:

sbu062 2020-10-29 09:13 Rev.: 9955

frozen stomach code not needed, debugging done in main branch

0 lines of code changed in 1 file:

sbu062 2020-10-29 09:12 Rev.: 9954

disable extended debugging output

1 lines of code changed in 1 file:

sbu062 2020-10-29 09:00 Rev.: 9953

small fix easier to find constant in code

2 lines of code changed in 1 file:

sbu062 2020-10-29 07:54 Rev.: 9952

global parameter for midgut volume timing threshold, fix comments

14 lines of code changed in 2 files:

sbu062 2020-10-28 20:22 Rev.: 9951

fix commants

6 lines of code changed in 1 file:

sbu062 2020-10-28 15:56 Rev.: 9950

midgut absorption: delete debug write code

0 lines of code changed in 1 file:

sbu062 2020-10-28 15:53 Rev.: 9949

midgut absorption working, refactor and cleanup

32 lines of code changed in 2 files:

sbu062 2020-10-28 14:35 Rev.: 9948

TEMP: debugging / checking in progress, **must revert**

41 lines of code changed in 1 file:

sbu062 2020-10-28 09:56 Rev.: 9947

branch to keep original code intact/frozen so far

0 lines of code changed in 1 file:

sbu062 2020-10-27 13:06 Rev.: 9946

TEMP: debugging / checking in progress, **must revert**

4 lines of code changed in 1 file:

sbu062 2020-10-27 08:41 Rev.: 9945

TEMP: debugging / checking in progress, **must revert**

47 lines of code changed in 2 files:

sbu062 2020-10-26 16:13 Rev.: 9944

notes on extended debugging output routines

9 lines of code changed in 1 file:

sbu062 2020-10-26 15:59 Rev.: 9943

more debug outputs in extended mode

26 lines of code changed in 1 file:

sbu062 2020-10-26 09:58 Rev.: 9942

fix debug output, MAX_COL is limited by global parameter

4 lines of code changed in 1 file:

sbu062 2020-10-26 07:53 Rev.: 9941

doc: small fixes

4 lines of code changed in 2 files:

sbu062 2020-10-26 07:48 Rev.: 9940

doc: extra code text confusing, deleted

1 lines of code changed in 1 file:

sbu062 2020-10-26 07:44 Rev.: 9939

doc: small fix wrong case

1 lines of code changed in 1 file:

sbu062 2020-10-24 07:06 Rev.: 9938

web: better title

2 lines of code changed in 1 file:

glj042 2020-10-23 09:14 Rev.: 9937

Corrected prey field - winter at lower lats

10 lines of code changed in 1 file:

sbu062 2020-10-21 07:53 Rev.: 9936

added only notes

14 lines of code changed in 1 file:

sbu062 2020-10-21 07:43 Rev.: 9935

v3.7: added note on Digital Life Norway

373 lines of code changed in 2 files:

sbu062 2020-10-21 07:26 Rev.: 9934

test placeholder text 0000 for tag in master ODT document

7 lines of code changed in 1 file:

sbu062 2020-10-21 07:22 Rev.: 9933

v3.7: svn style for tag added, no text changed
NOTE: there should be no style changes within the $ Revision $ tag for it to be processed as a whole

748 lines of code changed in 2 files:

sbu062 2020-10-21 07:00 Rev.: 9932

test keywords: revision tag in Title

28 lines of code changed in 1 file:

sbu062 2020-10-21 06:58 Rev.: 9931

test keywords, added revision to properties-comments

465 lines of code changed in 1 file:

sbu062 2020-10-21 06:56 Rev.: 9930

test keywords, there should be no formatting changes within the `$Revision XXX$` tag for it to autoupdate

148 lines of code changed in 1 file:

sbu062 2020-10-21 06:54 Rev.: 9929

test keywords update

497 lines of code changed in 1 file:

sbu062 2020-10-20 22:04 Rev.: 9928

v3.7: reformatted svn tag

88 lines of code changed in 2 files:

sbu062 2020-10-20 21:55 Rev.: 9927

v3.7: added svn tags in tracked files--fodt and txt--works well with tags
`svn propset svn:keywords "Id Date Revision HeadURL LastChangedDate" paper.*`

489 lines of code changed in 2 files:

sbu062 2020-10-20 21:47 Rev.: 9926

test auto-update svn version tag

467 lines of code changed in 1 file:

sbu062 2020-10-20 21:44 Rev.: 9925

test keywords in FODT file

513 lines of code changed in 1 file:

sbu062 2020-10-20 21:23 Rev.: 9924

v3.5: added flat XML tracked version, it is produced by default `make` = `make all` command

920 lines of code changed in 1 file:

sbu062 2020-10-20 21:22 Rev.: 9923

autogenerate flat XML version for svn version control

12 lines of code changed in 1 file:

sbu062 2020-10-20 21:08 Rev.: 9922

added sleep to wait for libreoffice to complete the conversion: needed because libreoffice starts background job

1 lines of code changed in 1 file:

sbu062 2020-10-20 21:02 Rev.: 9921

target for fodt conversion

12 lines of code changed in 1 file:

sbu062 2020-10-20 13:08 Rev.: 9920

v3.7: **weather** fixed
---------------
> Date: Tue, 20 Oct 2020 09:48:29 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: After the submission
>
> In line 266 you still write weather instead of whether
>
> 😊

2 lines of code changed in 1 file:

sbu062 2020-10-20 11:53 Rev.: 9919

v3.7: added ref to HPI in fish, as of referee 3

147 lines of code changed in 1 file:

sbu062 2020-10-20 10:07 Rev.: 9918

v3.7: fix refs to Science

6 lines of code changed in 1 file:

sbu062 2020-10-20 10:01 Rev.: 9917

v3.7: added emotion papers to avoid impression that no empirical work was done before

126 lines of code changed in 1 file:

sbu062 2020-10-19 21:06 Rev.: 9916

v3.7: manual fix `Science (80-. ).`

6 lines of code changed in 1 file:

sbu062 2020-10-19 19:54 Rev.: 9915

v3.7: check references

17 lines of code changed in 1 file:

sbu062 2020-10-19 15:42 Rev.: 9914

v3.7: small fixes made by Jarl
----------------------
> Date: Mon, 19 Oct 2020 09:06:45 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: welfare paper v3.7-r9913
>
> Hi sergey,
> A final read-through from me, with just a few suggstions.
> Jarl

11 lines of code changed in 1 file:

sbu062 2020-10-16 17:37 Rev.: 9913

v3.7: two new refs added

290 lines of code changed in 1 file:

sbu062 2020-10-16 16:06 Rev.: 9912

v3.7: fixed Sigrunn's comment that result in renumbering refs
------------------
> Managing these basic needs in complex unpredictable
> environments is a difficult task [202,203].
This is mentioned several times in the introduction…suggest delete

194 lines of code changed in 1 file:

sbu062 2020-10-16 15:51 Rev.: 9911

v3.7: small changes after re-readig

4 lines of code changed in 1 file:

sbu062 2020-10-16 15:30 Rev.: 9910

v3.7: fixes after Sigrunn r9908 and r9909

48 lines of code changed in 2 files:

sbu062 2020-10-16 12:21 Rev.: 9909

v3.5: Sigrunn's part 2
------------
> Date: Thu, 15 Oct 2020 09:53:34 +0000
> From: Sigrunn Eliassen <Sigrunn.Eliassen@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Cc: Jarl Giske <Jarl.Giske@uib.no>, "Kristiansen, Tore" <torek@hi.no>
> Subject: paper-welfare-v3.5_SE.docx
>
> Sergey,
>
> Sorry for being late with my comments and feedback. Please find my suggestions
> in the two files attached for part 1 - including comments to page 1-4 and
> the other file for the remaining of the ms
>
> sigrunn

35 lines of code changed in 1 file:

sbu062 2020-10-16 12:19 Rev.: 9908

v3.5: Sigrunn's part 1
----------
> Date: Thu, 15 Oct 2020 09:53:34 +0000
> From: Sigrunn Eliassen <Sigrunn.Eliassen@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Cc: Jarl Giske <Jarl.Giske@uib.no>, "Kristiansen, Tore" <torek@hi.no>
> Subject: paper-welfare-v3.5_SE.docx
>
> Sergey,
>
> Sorry for being late with my comments and feedback. Please find my suggestions
> in the two files attached for part 1 - including comments to page 1-4 and
> the other file for the remaining of the ms
>
> sigrunn

47 lines of code changed in 1 file:

glj042 2020-10-15 13:58 Rev.: 9907

Modified prey field

365 lines of code changed in 1 file:

glj042 2020-10-15 09:45

202 lines of code changed in 2 files:

sbu062 2020-10-14 22:02 Rev.: 9904

web: better style for hair line

3 lines of code changed in 1 file:

sbu062 2020-10-14 21:56 Rev.: 9903

web: add space left

1 lines of code changed in 1 file:

sbu062 2020-10-14 21:52 Rev.: 9902

web: avoid nested loading of xmpp chat module by checking page runs in an iframe

10 lines of code changed in 1 file:

sbu062 2020-10-14 12:38 Rev.: 9901

web: added notes on jscript

6 lines of code changed in 1 file:

sbu062 2020-10-14 11:05 Rev.: 9900

web: use referer to set src for ifram on entry, use main page redirect with `replace` to former iframe URL

23 lines of code changed in 1 file:

sbu062 2020-10-13 16:52 Rev.: 9899

web: label

2 lines of code changed in 1 file:

sbu062 2020-10-13 14:26 Rev.: 9898

web:bold

4 lines of code changed in 1 file:

sbu062 2020-10-13 14:07 Rev.: 9897

v3.6: small fix after Tore
-----------------
> Date: Mon, 12 Oct 2020 14:16:54 +0000
> From: "Kristiansen, Tore" <torek@hi.no>
> To: Sergey Budaev <sergey.budaev@uib.no>
> Cc: Jarl Giske <Jarl.Giske@uib.no>, Sigrunn Eliassen <sigrunn.eliassen@uib.no>
> Subject: RE: Welfare paper -- revision for RSOC
>
> Hi Sergey, all
>
> I think the manuscript looks excellent and very well written, and will be
> an eye-opener for why subjective states are important survival mechanisms.
>
> I have not much to add now, but maybe we should say something
> about "motor prediction errors" (did may movement go as
> predicted?https://www.frontiersin.org/articles/10.3389/fncel.2018.00524/full
> and maybe most important "reward prediction
> errors" (was the behavior worth the effort?
> https://www.cell.com/current-biology/fulltext/S0960-9822%2817%2930266-X)
>
> In the paragraph about signs (about line 130) we could also mention
> "interpretation capacity" and "semiotic freedom"?
>
> "An animal can potentially produce a wide range of responses (including
> ignorance) to any given stimulus depending on its internal model of its
> current state and its surroundings. Signs, like the smell of a predator or
> prey, are stimuli that signify something else than itself [81]. A multitude
> of signs can be found in the environment, some are also sent from the animal
> to other organisms voluntarily or involuntarily, and all organisms live in
> a “semiosphere” of signs (and noise falsely interpreted as signs). It
> is essential for learning and prediction of the future to recognize the
> meaning of important signs among the complex sensory input. This recognition
> or INTERPRETATION CAPCITY (Semiotic freedom) is therefore also essential
> for how RICH THE ANIMAL'S PHENOMENAL WORLD IS and HOW WELL an animal copes
> with its environment, AND will directly impact its welfare IN BOTH POSITIVE
> AND NEGATIVE WAYS[81]." (attached a shorter version of Hoffmeyers theories)
>
> All the best
> Tore

3 lines of code changed in 1 file:

sbu062 2020-10-13 12:58 Rev.: 9896

web: better name

1 lines of code changed in 1 file:

sbu062 2020-10-13 12:50 Rev.: 9895

disable autorefresh

1 lines of code changed in 1 file:

sbu062 2020-10-13 12:39 Rev.: 9894

web: added frame refresh
Google Chrome sometimes redults in blank page, workaround: toggle chat on and off

27 lines of code changed in 2 files:

sbu062 2020-10-13 09:04 Rev.: 9893

web: xmpp chat refers to embedded, **Warning:** note that http pages now forbidden to open from https

2 lines of code changed in 1 file:

sbu062 2020-10-13 08:54 Rev.: 9892

web: use TEGsvn

1 lines of code changed in 1 file:

sbu062 2020-10-13 08:44 Rev.: 9891

web: added everlayed xmpp chat

65 lines of code changed in 1 file:

sbu062 2020-10-12 12:00 Rev.: 9890

v3.6: refresh and renumber references, after r9886

267 lines of code changed in 1 file:

sbu062 2020-10-12 11:54 Rev.: 9889

v3.6: added Jarl's figure legend
--------------------
> On Sat, 10 Oct 2020 10:39:04 +0000
> Jarl Giske <Jarl.Giske@uib.no> wrote:
>
> What about this one? Modified figure and modified legend.
> As simple as possible....
> We should keep in mind that the paper is about wellbeing,
> and wellbeing is what we need to explain.
> The PPT (first sheet) is also attached so you may play
> with the graphics if you want.
> -j

3 lines of code changed in 1 file:

sbu062 2020-10-12 11:41 Rev.: 9888

v3.6: accepted Jarl's changes from r9886 with some modifications

54 lines of code changed in 1 file:

sbu062 2020-10-11 01:01 Rev.: 9887

move to websocket, bosch service is glitchy with google chrome, port fix 5280

1 lines of code changed in 1 file:

sbu062 2020-10-09 12:59 Rev.: 9886

v3.6: Jarl's changes with extensive commas in front of "and"

51 lines of code changed in 1 file:

sbu062 2020-10-09 07:55 Rev.: 9885

v3.6: figure legend added

5 lines of code changed in 1 file:

sbu062 2020-10-08 21:17 Rev.: 9884

v3.6: Jarl's notes on parts 5-6 and 7-9, additional small fixes

96 lines of code changed in 1 file:

sbu062 2020-10-08 20:52 Rev.: 9883

v3.6.: small additional changes

10 lines of code changed in 1 file:

sbu062 2020-10-08 19:28 Rev.: 9882

v3.6: integrated Jarl's parts 5-6 and 7-9

50 lines of code changed in 1 file:

sbu062 2020-10-08 19:08 Rev.: 9881

v3.5jg: Jarl's changes to 7-9
----------------
> Date: Thu, 8 Oct 2020 17:28:39 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: text/language edits to v 3.4
>
>
> Thanks for the comments to my text, also.
>
> Here are suggestions to the very last version
> for sections 7-9.
>
> I see that the figure legends are for the
> two figures we had in the previous round.
>
> Jarl

52 lines of code changed in 1 file:

sbu062 2020-10-08 19:04 Rev.: 9880

v3.5jg: Jarl's chages to sections5-6
------------------
> Date: Thu, 8 Oct 2020 16:52:01 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: text/language edits
>
> Good, but I am not finished. Here is sections 5-6.
> -jarl

31 lines of code changed in 1 file:

sbu062 2020-10-08 18:59 Rev.: 9879

v3.6: reverted r 9876
did `svn merge -r HEAD:9876 .`

29 lines of code changed in 1 file:

sbu062 2020-10-08 17:57 Rev.: 9878

fixed Makefile revert r9875

1 lines of code changed in 1 file:

sbu062 2020-10-08 17:54 Rev.: 9877

v3.5jg: Jarl's changes sections 7-9
----------------
> Date: Thu, 8 Oct 2020 17:28:39 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: text/language edits to v 3.4
>
>
> Thanks for the comments to my text, also.
>
> Here are suggestions to the very last version for
> sections 7-9.
>
> I see that the figure legends are for the two figures
> we had in the previous round.
>
> Jarl

32 lines of code changed in 2 files:

sbu062 2020-10-08 16:13 Rev.: 9876

v3.6: small changes, reviewer bold italic terms, their use is now minimized

2 lines of code changed in 1 file:

sbu062 2020-10-08 15:50 Rev.: 9875

v3.6: accepted nearly all Jarl's changes

15 lines of code changed in 2 files:

sbu062 2020-10-08 13:14 Rev.: 9874

v3.5: Jarl's second part of changes, sections 3-4
------------
> Date: Thu, 8 Oct 2020 12:58:41 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: RE: text/language edits
>
>
> Next 2 sections.
> -j

16 lines of code changed in 1 file:

sbu062 2020-10-08 13:04 Rev.: 9873

v3.5: Changes by Jarl:
------------
> Date: Thu, 8 Oct 2020 11:22:35 +0000
> From: Jarl Giske <Jarl.Giske@uib.no>
> To: Sergei Budaev <Sergey.Budaev@uib.no>
> Subject: text/language edits
>
> Hi again Sergey,
>
> I am working my way through the ms again, now with the readability of each
> sentence in focus.
>
> But my lack of competence in libre office has tricked me, I think, so that
> I wonder if i somehow lost the track-changes (by mistake accepted my own
> suggestions).
>
> Please see the Summary and Intro of this file. Maybe you have to compare
> each para/sentence with your previous version...
>
> I will find out how to restart Track changes and in the next version work
> from section 3 onwards.
>
> Jarl

27 lines of code changed in 1 file:

sbu062 2020-10-08 08:26 Rev.: 9872

added more examples from the book "Modern Fortran in Practice" by Arjen Markus
**source URL:** http://flibs.sourceforge.net/examples_modern_fortran.html

1038 lines of code changed in 5 files:

sbu062 2020-10-08 08:21 Rev.: 9871

added interfacing to C sqlite example from the book "Modern Fortran in Practice" by Arjen Markus
**source URL:** http://flibs.sourceforge.net/examples_modern_fortran.html

237 lines of code changed in 4 files:

sbu062 2020-10-08 08:15 Rev.: 9870

added examples from the book "Modern Fortran in Practice" by Arjen Markus
**source URL:** http://flibs.sourceforge.net/examples_modern_fortran.html

1589 lines of code changed in 13 files:

sbu062 2020-10-05 21:20 Rev.: 9869

v3.5: small forgotten fix after sending to Jarl

2 lines of code changed in 1 file:

sbu062 2020-10-05 20:17 Rev.: 9868

v3.5: small fix abstract

3 lines of code changed in 1 file:

sbu062 2020-10-05 20:11 Rev.: 9867

v3.5: small fixes following jarl's at r9856

3 lines of code changed in 1 file:

sbu062 2020-10-05 20:01 Rev.: 9866

v3.5: small fixes following jarl's at r9856

3 lines of code changed in 1 file:

sbu062 2020-10-05 19:34 Rev.: 9865

v3.5: small fixes following jarl's at r9856

1 lines of code changed in 1 file:

sbu062 2020-10-05 19:09 Rev.: 9864

v3.5: small fixes following jarl's at r9856

3 lines of code changed in 1 file:

sbu062 2020-10-05 19:03 Rev.: 9863

v3.5: small fixes following jarl's at r9856

3 lines of code changed in 1 file:

sbu062 2020-10-05 19:00 Rev.: 9862

v3.5: revert r9860 error commit

14 lines of code changed in 1 file:

sbu062 2020-10-05 18:58 Rev.: 9861

v3.5: small fixes following jarl's at r9856

12 lines of code changed in 1 file:

sbu062 2020-10-05 18:50 Rev.: 9860

v3.5: done all jarl's editions

40 lines of code changed in 1 file:

sbu062 2020-10-05 15:23 Rev.: 9859

v3.5: edited Model expectations pp. 1, 2, 3
Note: to check differences with Jarl original editions do `svn diff -r 9856:HEAD --diff-cmd meld paper.txt`

65 lines of code changed in 1 file:

sbu062 2020-10-05 14:30 Rev.: 9858

v3.5: added keywords from Jarl

2 lines of code changed in 1 file:

sbu062 2020-10-05 14:27 Rev.: 9857

v3.5: changes in text after jarl, **before** `Model expectations`

257 lines of code changed in 2 files:

sbu062 2020-10-05 14:20 Rev.: 9856

v3.4: Jarl's first round of editing, should allpy/go after r9850

252 lines of code changed in 2 files:

sbu062 2020-10-05 12:53 Rev.: 9855

v3.4: fixes from Jarl, before Model expectations

283 lines of code changed in 1 file:

sbu062 2020-10-05 07:44 Rev.: 9854

v3.4: added refs after Jarl

249 lines of code changed in 1 file:

sbu062 2020-10-04 22:30 Rev.: 9853

doc: mime type for markdown
use command `svn propset svn:mime-type text/markdown *md`

1 lines of code changed in 1 file:

sbu062 2020-10-03 18:04 Rev.: 9852

doc: set correct mime type for asciidoc
use command: `svn propset svn:mime-type text/asciidoc *adoc`

8 lines of code changed in 8 files:

sbu062 2020-10-03 18:02 Rev.: 9851

doc: set corect mime type

1 lines of code changed in 1 file:

sbu062 2020-10-02 12:17 Rev.: 9850

v3.4: small changes before sending Jarl

2 lines of code changed in 1 file:

sbu062 2020-10-02 12:10 Rev.: 9849

v3.4: added brief glossary of terms

37 lines of code changed in 1 file:

sbu062 2020-10-02 07:37 Rev.: 9848

reverted to r9844 as asciidoctor trac extension does not accept level 0 headers in non-book doc type

726 lines of code changed in 2 files:

sbu062 2020-10-02 07:26 Rev.: 9847

added asciidoc tags for rendering in trac

3 lines of code changed in 1 file:

sbu062 2020-10-02 07:06 Rev.: 9846

paper title compatible with asciidoc

1 lines of code changed in 1 file:

sbu062 2020-10-02 07:02 Rev.: 9845

plain text output now asciidoc extension because odt2txt produces compatible text

726 lines of code changed in 3 files:

sbu062 2020-10-01 22:14 Rev.: 9844

v3.4: third reviewer, fixed, remained feel/experience global change

311 lines of code changed in 1 file:

sbu062 2020-10-01 18:38 Rev.: 9843

v3.4: third reviewer, discuss Dawkins Why animals matter

297 lines of code changed in 1 file:

sbu062 2020-10-01 16:44 Rev.: 9842

v3.4: added Consequences for behaviour and welfare, referee 2

280 lines of code changed in 1 file:

sbu062 2020-10-01 10:06 Rev.: 9841

v3.4: added citation, refs reordered automatically

19 lines of code changed in 1 file:

sbu062 2020-10-01 07:05 Rev.: 9840

web: papers renamed to publicationa

2 lines of code changed in 1 file:

September 2020 »

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