September 2019 Commit Log

Number of Commits:
136
Number of Active Developers:
6
sbu062 2019-09-30 16:53 Rev.: 8659

fixed, needed last changed revision, revision is global as in `svnversion`

1 lines of code changed in 1 file:

sbu062 2019-09-30 13:28 Rev.: 8658

use `trim` is necessary on Windows because of blanks after version string

1 lines of code changed in 1 file:

sbu062 2019-09-30 12:34 Rev.: 8657

report absent configuration file in GUI mode too, dialog

8 lines of code changed in 1 file:

sbu062 2019-09-30 11:56 Rev.: 8656

report svn version

18 lines of code changed in 3 files:

sbu062 2019-09-30 11:36 Rev.: 8655

typo in macro name

2 lines of code changed in 1 file:

cje012 2019-09-30 10:41 Rev.: 8654

Changes to plots as discussed

20 lines of code changed in 1 file:

hje044 2019-09-30 10:31 Rev.: 8653

1041 lines of code changed in 32 files:

sbu062 2019-09-30 10:30 Rev.: 8652

potential error correction if `svn` is not on the system

7 lines of code changed in 1 file:

sbu062 2019-09-30 09:47 Rev.: 8651

add autogenerate svn global project version number
- it is better than file version through keywords
- `svn info --show-item revision`
- note that `svnversion` shows global repository version

14 lines of code changed in 1 file:

sbu062 2019-09-30 09:31 Rev.: 8650

added autogenerated headers `version.h`

4 lines of code changed in 1 file:

sbu062 2019-09-30 09:25 Rev.: 8649

no, version file is autogenerated

3 lines of code changed in 2 files:

sbu062 2019-09-30 09:21 Rev.: 8648

added version header

0 lines of code changed in 1 file:

sbu062 2019-09-29 21:20 Rev.: 8647

web: move conversionjs to v5.0.3

3 lines of code changed in 1 file:

sbu062 2019-09-28 09:35 Rev.: 8646

better note on default `interface_graphical` parameter in config file

3 lines of code changed in 1 file:

sbu062 2019-09-28 09:19 Rev.: 8645

allow logical parameter `interface_graphical` in configuration file to set GUI or CMD interface type

47 lines of code changed in 3 files:

sbu062 2019-09-28 08:12 Rev.: 8644

config: enable newsflash, single standard favicon at www root

2 lines of code changed in 1 file:

sbu062 2019-09-27 20:18 Rev.: 8643

doxygen comments were missing on certain subroutines

13 lines of code changed in 2 files:

sbu062 2019-09-27 20:07 Rev.: 8642

introductory doxygen descriptions

16 lines of code changed in 7 files:

sbu062 2019-09-27 20:03 Rev.: 8641

list of files includes only specific source files, external modules are excluded

2 lines of code changed in 1 file:

sbu062 2019-09-27 15:55 Rev.: 8640

better static linking on Windows

1 lines of code changed in 1 file:

sbu062 2019-09-27 15:33 Rev.: 8639

small reformat

13 lines of code changed in 2 files:

sbu062 2019-09-27 15:25 Rev.: 8638

basic dosygen config is added

2365 lines of code changed in 1 file:

sbu062 2019-09-27 13:59 Rev.: 8637

`-h` switch and command line parameters processing

31 lines of code changed in 3 files:

sbu062 2019-09-27 13:27 Rev.: 8636

cleanup main driver, must be minimal

16 lines of code changed in 2 files:

sbu062 2019-09-27 13:27 Rev.: 8635

standard build type is Linux gfortran

6 lines of code changed in 1 file:

sbu062 2019-09-27 13:20 Rev.: 8634

build fix for Windows with gfortran-mingw, passed build ok

9 lines of code changed in 1 file:

sbu062 2019-09-27 13:17 Rev.: 8633

build params for Windows with gfortran with mingw

14 lines of code changed in 1 file:

sbu062 2019-09-27 13:12 Rev.: 8632

build tweaked to Windows with ifort, passed build ok

11 lines of code changed in 1 file:

sbu062 2019-09-27 12:37 Rev.: 8631

added build instructions for ifort and oracle/sun, also Windows build commands

19 lines of code changed in 1 file:

sbu062 2019-09-27 09:23 Rev.: 8630

added strings module, work further

976 lines of code changed in 6 files:

sbu062 2019-09-27 08:27 Rev.: 8629

white space adjust, about info gui

253 lines of code changed in 6 files:

sbu062 2019-09-27 07:33 Rev.: 8628

better names for widget index vars

11 lines of code changed in 1 file:

sbu062 2019-09-27 07:23 Rev.: 8627

addad rudimentary makefile for Linux, svnignore file

19 lines of code changed in 2 files:

sbu062 2019-09-26 22:44 Rev.: 8626

show global parameters in GUI window

63 lines of code changed in 1 file:

sbu062 2019-09-26 22:07 Rev.: 8625

config data format set to correct, was wrong to test error reporting

1 lines of code changed in 1 file:

sbu062 2019-09-26 22:06 Rev.: 8624

continue GUI version

50 lines of code changed in 4 files:

sbu062 2019-09-26 21:36 Rev.: 8623

should use `real64` version of dislin
- build with: `gfortran -g m_realcalc.f90 m_bas_utils.f90 m_parsepar.f90 m_common.f90 m_ifcmd.f90 m_ifgui.f90 m_fish.f90 m_env.f90 m_runtime.f90 main.f90 -ldislin_d -I/usr/local/dislin/gf/real64`
- note `-ldislin_d` and `-I...gf/real64`

2 lines of code changed in 1 file:

sbu062 2019-09-26 21:32 Rev.: 8622

started graphical user interface using dislin

83 lines of code changed in 3 files:

sbu062 2019-09-26 18:18

small changes

6 lines of code changed in 3 files:

sbu062 2019-09-26 18:14 Rev.: 8619

environment is now separate module

32 lines of code changed in 2 files:

sbu062 2019-09-26 18:07 Rev.: 8618

small and unimportant changes

16 lines of code changed in 2 files:

sbu062 2019-09-26 18:00 Rev.: 8617

better output formats for arrays

5 lines of code changed in 1 file:

sbu062 2019-09-26 17:50 Rev.: 8616

error message report transport_dim is bad

1 lines of code changed in 1 file:

sbu062 2019-09-26 15:54 Rev.: 8615

continued working

149 lines of code changed in 4 files:

sbu062 2019-09-26 14:14 Rev.: 8614

continue working on stomach model
- buld command: `ifort m_realcalc.f90 m_common.f90 m_bas_utils.f90 m_parsepar.f90 m_fish.f90 m_runtime.f90 m_ifcmd.f90 main.f90`
- build ok

186 lines of code changed in 5 files:

sbu062 2019-09-26 13:18 Rev.: 8613

parameters updated

3 lines of code changed in 1 file:

sbu062 2019-09-26 13:18 Rev.: 8612

print errors in PARSETEXT to standard error

18 lines of code changed in 1 file:

sbu062 2019-09-26 12:38 Rev.: 8611

add integer missing value

5 lines of code changed in 1 file:

sbu062 2019-09-26 11:53 Rev.: 8610

skeleton files for the user interface modules
- GUI and CMD interfaces are isolated and should be able to
build program with only one of them

16 lines of code changed in 2 files:

sbu062 2019-09-26 11:32 Rev.: 8609

param file, working on it

22 lines of code changed in 1 file:

sbu062 2019-09-26 11:31 Rev.: 8608

reuse standard precision parameters from `m_realcalc`, need declare `public`

4 lines of code changed in 2 files:

sbu062 2019-09-26 11:26 Rev.: 8607

added base_utils for interpolation

5774 lines of code changed in 1 file:

sbu062 2019-09-26 11:11 Rev.: 8606

volume is better name

2 lines of code changed in 1 file:

sbu062 2019-09-26 11:10 Rev.: 8605

initial parameters file

16 lines of code changed in 1 file:

sbu062 2019-09-26 10:23 Rev.: 8604

started building the fish and food system

99 lines of code changed in 4 files:

sbu062 2019-09-26 08:59 Rev.: 8603

added/created a few other project files

175 lines of code changed in 3 files:

sbu062 2019-09-26 08:39 Rev.: 8602

test and example deleted
* passed

0 lines of code changed in 2 files:

sbu062 2019-09-26 08:38 Rev.: 8601

read-only test with generated data for **PARSETEXT**

3 lines of code changed in 2 files:

sbu062 2019-09-26 08:33 Rev.: 8600

test example for parsetext (unchanged from github)

25 lines of code changed in 1 file:

sbu062 2019-09-26 08:26 Rev.: 8599

placed contents of original cmake-generated `PT_version.h` into body

9 lines of code changed in 1 file:

sbu062 2019-09-26 08:15 Rev.: 8598

added project for Ivar stomach model
* `parsetext.f90` for parameters, deleted `ifdef PT_HDF5`
preprocessor code for HDF5 library
* ParseText is here: https://github.com/pdebuyl/ParseText

468 lines of code changed in 1 file:

sbu062 2019-09-25 21:37 Rev.: 8597

widget tests and experiments

86 lines of code changed in 1 file:

sbu062 2019-09-25 20:01 Rev.: 8596

standard svn path on desktop (for Linux hosts)

1 lines of code changed in 1 file:

sbu062 2019-09-25 15:07 Rev.: 8595

testing and playing with dislin plotting

34 lines of code changed in 1 file:

sbu062 2019-09-25 12:35 Rev.: 8594

dislin gui example from gallery

310 lines of code changed in 1 file:

sbu062 2019-09-25 12:22 Rev.: 8593

more gui examples for dislin

171 lines of code changed in 3 files:

sbu062 2019-09-25 12:08 Rev.: 8592

adapt makefile for **No line breaks**
* presumably this would make tracking changes easier

3 lines of code changed in 1 file:

sbu062 2019-09-25 12:06 Rev.: 8591

v2.4: disabled line breaking in odt2txt `--width=-1`

381 lines of code changed in 1 file:

sbu062 2019-09-25 11:52 Rev.: 8590

v2.4: few small chenges, references reformatted APA style without DOI and issue

295 lines of code changed in 1 file:

sbu062 2019-09-25 10:57 Rev.: 8589

official F90 demo for dislin

1688 lines of code changed in 2 files:

sbu062 2019-09-25 10:47 Rev.: 8588

simple test for dislin

87 lines of code changed in 2 files:

sbu062 2019-09-25 07:34 Rev.: 8587

v2.4: incorporated Jarl's comments from v2.5 r8584 r8585
- references reformatted to APA style

1345 lines of code changed in 1 file:

tla051 2019-09-25 06:09 Rev.: 8586

rewritten to produce output along the AeN transect

184 lines of code changed in 4 files:

sbu062 2019-09-23 10:44 Rev.: 8585

Jarl's changes round 2: paper-welfare-v2.3 jarl-2.docx

243 lines of code changed in 1 file:

sbu062 2019-09-23 10:40 Rev.: 8584

Jarl's changes round 1: paper-welfare-v2.3-1 jarl.docx

140 lines of code changed in 1 file:

tla051 2019-09-23 06:09 Rev.: 8583

back-up before picking work up at UNIS

67 lines of code changed in 2 files:

sbu062 2019-09-22 11:40 Rev.: 8582

v2.3: small changes wording

31 lines of code changed in 1 file:

sbu062 2019-09-21 20:54 Rev.: 8581

v2.3: few small changes

13 lines of code changed in 1 file:

sbu062 2019-09-21 20:25 Rev.: 8580

v2.3: reinstall fragment on consciousness in appropriate place below

28 lines of code changed in 1 file:

sbu062 2019-09-21 20:16 Rev.: 8579

v2.3: cleanup intro

38 lines of code changed in 1 file:

sbu062 2019-09-21 13:46 Rev.: 8578

v2.3: added Panksepp-2011 to a couple more places

14 lines of code changed in 1 file:

sbu062 2019-09-21 13:41 Rev.: 8577

v2.3: add Panksepp 2011

29 lines of code changed in 1 file:

sbu062 2019-09-21 08:28 Rev.: 8576

v2.3: further fixes of refs

13 lines of code changed in 1 file:

sbu062 2019-09-21 08:11 Rev.: 8575

v2.3: small fixes of refa

16 lines of code changed in 1 file:

sbu062 2019-09-21 07:51 Rev.: 8574

v2.3: fixed refs unneeded automatic https links

7 lines of code changed in 1 file:

sbu062 2019-09-21 07:28 Rev.: 8573

v2.3: small changes

80 lines of code changed in 1 file:

sbu062 2019-09-20 21:48 Rev.: 8572

v2.3: small fix refs

4 lines of code changed in 1 file:

sbu062 2019-09-20 21:35 Rev.: 8571

update makefile for new svn path and paper version

2 lines of code changed in 1 file:

sbu062 2019-09-20 21:34 Rev.: 8570

v2.3: incorporated JG's comments and changes
- figures not yet here

679 lines of code changed in 1 file:

sbu062 2019-09-20 21:30 Rev.: 8569

v2.2: Jarl's revisions from email 26/04/19

360 lines of code changed in 1 file:

sbu062 2019-09-19 09:29 Rev.: 8568

web: updated server readme, new macro

104 lines of code changed in 2 files:

sbu062 2019-09-18 09:05 Rev.: 8567

config: good to have webdav path root also

5 lines of code changed in 1 file:

sbu062 2019-09-18 08:38 Rev.: 8566

config: fix bug in weblink

2 lines of code changed in 1 file:

sbu062 2019-09-18 08:34 Rev.: 8565

config: add webdav download link to notification on trac backup

5 lines of code changed in 1 file:

sbu062 2019-09-17 21:41 Rev.: 8564

config: allow adding buddies in web interface to IM

1 lines of code changed in 1 file:

cje012 2019-09-16 11:28 Rev.: 8563

Changes to make the plots reflect the figures that were shown at the ESEB conference.

25 lines of code changed in 1 file:

lhi088 2019-09-16 11:16 Rev.: 8562

1322 lines of code changed in 3 files:

sbu062 2019-09-14 08:34 Rev.: 8561

config: increase visibility of alternative auth config options

2 lines of code changed in 1 file:

sbu062 2019-09-13 22:16 Rev.: 8560

config: disabled all links to jwchat-based frontend, converse.js is now default
- file transfer works

2 lines of code changed in 2 files:

sbu062 2019-09-13 22:09 Rev.: 8559

config: switched to new ejabberd 18.12.1-2~bpo9+1
- apt-get -t stretch-backports install ejabberd
- config update as in budaev.info
- **ejabberdctl.cfg** added `ERLANG_NODE=ejabberd@aha-svn-server`
- disabled jwchat web interface frontend in ejabberd

37 lines of code changed in 1 file:

nzlcj 2019-09-12 12:06 Rev.: 8558

Coded together. Fixed some bugs. Reduced some arrays to save memory.

62 lines of code changed in 1 file:

nzlcj 2019-09-12 10:53 Rev.: 8557

Laura's IO file modified from Sergey's.

1317 lines of code changed in 1 file:

cje012 2019-09-12 08:47 Rev.: 8556

Changes to axis titles in fig E

7 lines of code changed in 1 file:

sbu062 2019-09-10 17:08 Rev.: 8555

source non-executable

0 lines of code changed in 1 file:

sbu062 2019-09-10 17:07 Rev.: 8554

no executable set

0 lines of code changed in 1 file:

sbu062 2019-09-10 17:06 Rev.: 8553

merged rename r8552

2697 lines of code changed in 2 files:

sbu062 2019-09-10 17:03 Rev.: 8552

rename to use `m_` convention for module names

2697 lines of code changed in 2 files:

sbu062 2019-09-10 13:40 Rev.: 8551

web: link to new binary build of HEDTOOLS

1 lines of code changed in 1 file:

sbu062 2019-09-10 12:48 Rev.: 8550

minor fix typo

0 lines of code changed in 2 files:

sbu062 2019-09-10 12:47 Rev.: 8549

typo

1 lines of code changed in 1 file:

sbu062 2019-09-10 11:26 Rev.: 8547

demo for copying CSV data across dynamic and fixed arrays

62 lines of code changed in 3 files:

sbu062 2019-09-10 08:41 Rev.: 8546

delete work branch, Henrick merged all changes r8544

0 lines of code changed in 7 files:

hje044 2019-09-06 12:00 Rev.: 8545

Code now builds with no issues

1 lines of code changed in 1 file:

hje044 2019-09-06 11:01 Rev.: 8544

Merged corrections from Sergeys branch

11106 lines of code changed in 8 files:

lhi088 2019-09-04 08:29 Rev.: 8543

73 lines of code changed in 2 files:

sbu062 2019-09-03 11:42 Rev.: 8542

reseed randomness within run is obsolete

1 lines of code changed in 1 file:

sbu062 2019-09-03 10:41 Rev.: 8541

merged (FS_CHDIR) from workdir as fix r8525 to HEDTOOLS

0 lines of code changed in 2 files:

sbu062 2019-09-03 10:39 Rev.: 8540

merged (FS_CHDIR) from HEDTOOLS r8525

50 lines of code changed in 1 file:

sbu062 2019-09-03 10:37 Rev.: 8539

added forgotten fix to `FS_CHDIR`

51 lines of code changed in 2 files:

sbu062 2019-09-03 10:27 Rev.: 8538

diagnostics for possible file write issues in `CSV_MATRIX_WRITE`

8 lines of code changed in 1 file:

sbu062 2019-09-03 09:42 Rev.: 8537

continue getting rid of dble and dcos and dabs
- use real, generic `cos` and `abs`

12 lines of code changed in 2 files:

sbu062 2019-09-03 09:35 Rev.: 8536

got rid of real*8 and dble
- use real and SRP kind from `m_realcalc` module

122 lines of code changed in 2 files:

cje012 2019-09-03 09:35 Rev.: 8535

Mostly cosmetic but important changes to all figures.

120 lines of code changed in 1 file:

sbu062 2019-09-03 07:47 Rev.: 8534

comments fix only

4 lines of code changed in 1 file:

sbu062 2019-09-03 06:28 Rev.: 8533

Pop array is written to CSV format rather than binary
- CSV is human-readable and Excel-editable, Pop is
now **read** from CSV (r8531)

16 lines of code changed in 1 file:

sbu062 2019-09-02 18:09 Rev.: 8532

check if population data file does exist
- this avoids crash if no data

7 lines of code changed in 1 file:

sbu062 2019-09-02 17:46 Rev.: 8531

substituted initial population binary data with CSV human-readable format

5080 lines of code changed in 2 files:

sbu062 2019-09-02 17:20 Rev.: 8530

added keyword properties, also at the start of thew source code

7 lines of code changed in 2 files:

sbu062 2019-09-02 17:17 Rev.: 8529

reorganised Katja and Henrik's code, cleanup
- utility functions that were external (behind `program`)
are isolated into Utils.f90 module `m_utils`
- module `m_zrand.f90` moved to `m_urils`, file obsolete
- `BASE_UTILS.f90` renamed to lowercase (should have no
effect on Windows)

5 lines of code changed in 4 files:

sbu062 2019-09-02 14:12 Rev.: 8527

merged (FS_CHDIR) from the dev branch r8525

69 lines of code changed in 2 files:

sbu062 2019-09-02 14:04 Rev.: 8526

added doc on (FS_CHDIR) function r8525

20 lines of code changed in 1 file:

sbu062 2019-09-02 13:55 Rev.: 8525

added (FS_CHDIR) function to change directory

49 lines of code changed in 1 file:

sbu062 2019-09-02 13:41 Rev.: 8524

added (FS_CHDIR) function to change directory
- Note that `call system("cd some_dir") may not work because
it changes the directory only in the subshell and does not
apply to the calling program

49 lines of code changed in 1 file:

sbu062 2019-09-02 12:41 Rev.: 8523

substitute function for old drand()

13 lines of code changed in 1 file:

sbu062 2019-09-02 12:41 Rev.: 8522

made the Source1.f90 building on intel fortran 19

5858 lines of code changed in 3 files:

sbu062 2019-09-02 10:47 Rev.: 8521

add dependencies

797 lines of code changed in 2 files:

August 2019 »

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