June 2017 Commit Log

Number of Commits:
384
Number of Active Developers:
5
sbu062 2017-06-30 19:58 Rev.: 4239

refresh windows builds

2 lines of code changed in 1 file:

sbu062 2017-06-30 19:49 Rev.: 4238

deleted references to obsolete error module

3 lines of code changed in 1 file:

sbu062 2017-06-30 15:54 Rev.: 4237

better link title

1 lines of code changed in 1 file:

sbu062 2017-06-30 15:53 Rev.: 4236

added recent presentation in web

2 lines of code changed in 1 file:

sbu062 2017-06-30 15:20 Rev.: 4235

f0 added, baseline expectancy

1570 lines of code changed in 3 files:

cje012 2017-06-30 11:35

Minor changes

32 lines of code changed in 2 files:

sbu062 2017-06-29 21:39 Rev.: 4232

cleanup doxy in (init) methods for all behaviours

20 lines of code changed in 1 file:

sbu062 2017-06-29 19:55 Rev.: 4231

include neighbours() proc into head doc

7 lines of code changed in 1 file:

sbu062 2017-06-29 19:41 Rev.: 4230

visual range scheme added to head doc

2 lines of code changed in 1 file:

sbu062 2017-06-29 19:36 Rev.: 4229

visual range scheme for head doc

22275 lines of code changed in 3 files:

sbu062 2017-06-29 18:50 Rev.: 4228

fix scheme

5844 lines of code changed in 3 files:

sbu062 2017-06-29 18:36 Rev.: 4227

hope function mechanism scheme

10130 lines of code changed in 3 files:

sbu062 2017-06-29 18:32 Rev.: 4226

added hope function mechanism

15 lines of code changed in 1 file:

sbu062 2017-06-29 15:18 Rev.: 4225

continue (migrate_do_this), added hope function grid parameters, placed them into (DDPINTERPOL)

20 lines of code changed in 1 file:

sbu062 2017-06-29 15:04 Rev.: 4224

continue (migrate_do_this), added hope function array and calculation backend

35 lines of code changed in 1 file:

sbu062 2017-06-29 14:30 Rev.: 4223

continue (migrate_do_this), added hope function for food gain

2402 lines of code changed in 3 files:

sbu062 2017-06-29 14:10 Rev.: 4222

continue (migrate_do_this), up to hope function formula, need plot

17 lines of code changed in 1 file:

sbu062 2017-06-29 13:56 Rev.: 4221

continue (migrate_do_this), doxy formula renders poorly

2 lines of code changed in 1 file:

sbu062 2017-06-29 13:53 Rev.: 4220

continue (migrate_do_this), interface doxy

2 lines of code changed in 1 file:

sbu062 2017-06-29 13:48 Rev.: 4219

continue (migrate_do_this)

82 lines of code changed in 1 file:

sbu062 2017-06-29 13:48 Rev.: 4218

reimplement (migrate_do_this), deleted fixed hope parameters, optional parameters, added more 'meat'

92 lines of code changed in 1 file:

sbu062 2017-06-28 20:32 Rev.: 4217

typo

3 lines of code changed in 1 file:

sbu062 2017-06-28 20:18 Rev.: 4216

public interface

7 lines of code changed in 1 file:

sbu062 2017-06-28 20:12 Rev.: 4215

implemented (percept_memory_predators_mean_split) for split mean number of predators in perception memory

113 lines of code changed in 1 file:

sbu062 2017-06-28 20:12 Rev.: 4214

elemental procedures

2 lines of code changed in 1 file:

sbu062 2017-06-28 19:23 Rev.: 4213

white space formatting only

2 lines of code changed in 1 file:

sbu062 2017-06-28 19:06 Rev.: 4212

public interface

9 lines of code changed in 1 file:

sbu062 2017-06-28 19:06 Rev.: 4211

implemented (percept_memory_food_mean_n_split) for split mean number of food items in perception memory; small leanups doxy comments

126 lines of code changed in 1 file:

sbu062 2017-06-28 18:00 Rev.: 4210

check window exceeds stack length (percept_memory_food_mean_size_split)

3 lines of code changed in 1 file:

sbu062 2017-06-28 17:25 Rev.: 4209

generic interface for (percept_memory_food_mean_size_split)

9 lines of code changed in 1 file:

sbu062 2017-06-28 17:16 Rev.: 4208

sanity check in (percept_memory_food_mean_size_split)

5 lines of code changed in 1 file:

sbu062 2017-06-28 17:16 Rev.: 4207

fis asciiplot in (percept_memory_food_mean_size_split)

15 lines of code changed in 1 file:

sbu062 2017-06-28 15:28 Rev.: 4206

implemented (percept_memory_food_mean_size_split) for split mean of perception memory

74 lines of code changed in 1 file:

sbu062 2017-06-28 14:37 Rev.: 4205

descriptions for memory components

10 lines of code changed in 1 file:

sbu062 2017-06-28 14:37 Rev.: 4204

continue (migrate_do_this): 'hope' factors and parameters

54 lines of code changed in 1 file:

sbu062 2017-06-28 13:52 Rev.: 4203

continue (migrate_do_this)

52 lines of code changed in 1 file:

sbu062 2017-06-28 12:42 Rev.: 4202

better rendering list and links for procedures in doxy, for (predator_perception_get_visrange_objects)

54 lines of code changed in 1 file:

sbu062 2017-06-28 12:31 Rev.: 4201

better rendering list and links for procedures in doxy, for (consp_perception_get_visrange_objects)

60 lines of code changed in 1 file:

sbu062 2017-06-28 12:18 Rev.: 4200

include doxy links to backend procedures

8 lines of code changed in 1 file:

sbu062 2017-06-28 12:07 Rev.: 4199

list renders better in doxy

32 lines of code changed in 1 file:

sbu062 2017-06-28 11:42 Rev.: 4198

update with -u at pull

1 lines of code changed in 1 file:

sbu062 2017-06-28 08:43 Rev.: 4197

interface for migrate

1 lines of code changed in 1 file:

sbu062 2017-06-28 08:40 Rev.: 4196

avoid multiple calculations of the agent's body length

7 lines of code changed in 1 file:

sbu062 2017-06-28 07:14 Rev.: 4195

updated svn root addressin web scripts

4 lines of code changed in 4 files:

sbu062 2017-06-27 21:12 Rev.: 4194

edit doxy head

2 lines of code changed in 2 files:

sbu062 2017-06-27 21:08 Rev.: 4193

the agent hierarchy is just an examle here

3 lines of code changed in 1 file:

sbu062 2017-06-27 21:01

edit doxy head

10 lines of code changed in 2 files:

sbu062 2017-06-27 18:23 Rev.: 4190

converted (nearest_target) to subroutine to reuse distance

18 lines of code changed in 1 file:

sbu062 2017-06-27 16:07 Rev.: 4189

small change

6 lines of code changed in 1 file:

sbu062 2017-06-27 16:07 Rev.: 4188

todo only

3 lines of code changed in 1 file:

sbu062 2017-06-27 16:07 Rev.: 4187

return to implementing (migrate_do_this): use the tnvironment functions previously implemented to calculate target distance and target point

18 lines of code changed in 1 file:

sbu062 2017-06-27 14:42 Rev.: 4186

illustrative ascii plot for offset

14 lines of code changed in 1 file:

sbu062 2017-06-27 14:36 Rev.: 4185

fix link in doxy (nearest_target)

1 lines of code changed in 1 file:

sbu062 2017-06-27 14:31 Rev.: 4184

added update in hg

1 lines of code changed in 1 file:

sbu062 2017-06-27 14:29 Rev.: 4183

added offset parameter into (environment_get_nearest_point_in_outside_obj) so the agent penetrates into the target environment container at migration

22 lines of code changed in 1 file:

nzlcj 2017-06-27 14:20 Rev.: 4182

Coded together. Weight shoudl be there after all, we dedebugged the code. Checked when energy budget is negative in worst environment, required Orexin-effect on intake less than 2.8. May be higher if other constraints kick in.

3 lines of code changed in 1 file:

sbu062 2017-06-27 14:15 Rev.: 4181

re-clone full hg repo each time

6 lines of code changed in 1 file:

sbu062 2017-06-27 13:33 Rev.: 4180

added illustrative diagram for offset paameter

12 lines of code changed in 1 file:

sbu062 2017-06-27 13:33 Rev.: 4179

added offset parameter to (environment_get_corners_2dxy) to mimic and avoid shrink function call on environment container object

30 lines of code changed in 1 file:

sbu062 2017-06-27 13:33 Rev.: 4178

interface operator for shrinking an environment container object by a fixed value (-)

17 lines of code changed in 1 file:

sbu062 2017-06-27 13:33 Rev.: 4177

the environment object is only the spatial container, deleted surlig and temperature attributes, obsolete

0 lines of code changed in 1 file:

sbu062 2017-06-27 13:33 Rev.: 4176

implemented (shrink2d) for environment objects

45 lines of code changed in 1 file:

sbu062 2017-06-27 12:01 Rev.: 4175

full initial implementation of (environment_get_nearest_point_in_outside_obj), fast unsafe (requires fixed order of outside segment points) and no insert distance parameter so far

84 lines of code changed in 1 file:

sbu062 2017-06-27 12:01 Rev.: 4174

interface for (environment_get_corners_2dxy)

2 lines of code changed in 1 file:

sbu062 2017-06-27 12:01 Rev.: 4173

implemented (environment_get_corners_2dxy): get corners of the ENVIRONMENT object

54 lines of code changed in 1 file:

cje012 2017-06-27 09:33 Rev.: 4172

Christian found small error in rreal function where a number was not declared properly.

2 lines of code changed in 1 file:

sbu062 2017-06-27 09:26 Rev.: 4171

tests obsolete

0 lines of code changed in 1 file:

nzlcj 2017-06-27 09:25 Rev.: 4170

Coded together. Camilla had found important bug in SMR_THF - weight was not included in calculations. Now fixed. Parameters likely need to be revised - even the smallest fish have paid metabolic expenses for a 1-kg fish, as much as 100 times too much.

2 lines of code changed in 1 file:

sbu062 2017-06-27 09:22 Rev.: 4169

small fix

3 lines of code changed in 1 file:

cje012 2017-06-27 09:01 Rev.: 4168

Minor changes to comments, to make them easier to understand.

1 lines of code changed in 1 file:

cje012 2017-06-27 07:27 Rev.: 4167

Minor change in a comment, to make it easier to understand.

2 lines of code changed in 1 file:

cje012 2017-06-27 07:23 Rev.: 4166

Minor changes.

1 lines of code changed in 1 file:

cje012 2017-06-27 07:08 Rev.: 4165

Edited headers for the strategy figures, to make them easier to understand. Moved the plots per invividual and start environment to the end of the code and commented them out, as the plots per speed groups is easier to understand. If you want these figures as well they can be uncommented and ran where they are.

94 lines of code changed in 1 file:

cje012 2017-06-27 07:01 Rev.: 4164

Commented out lines that helped the invididuals to survive in the static model.

12 lines of code changed in 1 file:

sbu062 2017-06-26 21:13 Rev.: 4163

added webdav no client access

9 lines of code changed in 1 file:

sbu062 2017-06-26 20:16 Rev.: 4162

changed svn repo main address in doc, included relocate command

41 lines of code changed in 1 file:

sbu062 2017-06-26 17:36 Rev.: 4161

adapted for svn and hg

51 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4160

continue on (migrate_do_this)

43 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4159

rudimentary skeleton for (migrate_do_this)

19 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4158

(init) method for MIGRATE

7 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4157

started implementing MIGRATE behaviour unit, class data coms so far

21 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4156

actor agent is a fish

547 lines of code changed in 3 files:

sbu062 2017-06-26 16:39 Rev.: 4155

smaller tabs as in the code

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4154

fix script name

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:39 Rev.: 4153

small fix

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4152

code tag and fix

2 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4151

added code example to header doc

21 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4150

delete '*.orig' files from hg at distclean

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4149

readme in title

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4148

section for commondata

8 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4147

more informative headers

2 lines of code changed in 1 file:

sbu062 2017-06-26 16:38

typo

2 lines of code changed in 2 files:

sbu062 2017-06-26 16:38 Rev.: 4144

fix doxy link

3 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4143

delete obsolete comment in (walk_random_do_execute)

2 lines of code changed in 1 file:

sbu062 2017-06-26 16:38 Rev.: 4142

type fix

1 lines of code changed in 1 file:

sbu062 2017-06-26 16:37 Rev.: 4141

renamed expected_cost_moving to cost_moving in all methods of WALK_RANDOM

8 lines of code changed in 1 file:

sbu062 2017-06-26 16:36 Rev.: 4140

done (init) method for WALK_RANDOM

7 lines of code changed in 1 file:

sbu062 2017-06-26 16:36 Rev.: 4139

procedure (walk_random_do_execute) fully implemented, needs more checks though, WALK_RANDOM done

104 lines of code changed in 1 file:

sbu062 2017-06-26 16:36 Rev.: 4138

added optional fixed distance to (walk_random_do_this)

20 lines of code changed in 1 file:

sbu062 2017-06-26 16:36 Rev.: 4137

started initial skeleton for (walk_random_do_execute)

79 lines of code changed in 1 file:

sbu062 2017-06-26 16:36 Rev.: 4136

added @ref tag to refer to subsections in header doc, genome and some neurobiological objects

17 lines of code changed in 1 file:

sbu062 2017-06-26 16:36

added @ref tag to refer to subsections in header doc, so far for genome objects

27 lines of code changed in 2 files:

sbu062 2017-06-26 16:35 Rev.: 4133

continue (walk_random_motivations_expect): check and rearrange doxy docs

42 lines of code changed in 1 file:

sbu062 2017-06-26 16:35 Rev.: 4132

continue (walk_random_motivations_expect): proportion parameters, format code and doxy

34 lines of code changed in 1 file:

sbu062 2017-06-26 16:34 Rev.: 4131

continue (walk_random_motivations_expect): primary and final motivations plus -- done

29 lines of code changed in 1 file:

sbu062 2017-06-26 16:34 Rev.: 4130

continue (walk_random_motivations_expect): motivational expectancies

172 lines of code changed in 1 file:

sbu062 2017-06-26 16:34 Rev.: 4129

continue (walk_random_motivations_expect): done up to calculation of motivational expectancies

54 lines of code changed in 1 file:

sbu062 2017-06-26 16:34 Rev.: 4128

renamed perception override variables in (walk_random_motivations_expect)

14 lines of code changed in 1 file:

sbu062 2017-06-26 14:27 Rev.: 4127

fix description: it's object radius

2 lines of code changed in 1 file:

sbu062 2017-06-26 14:27 Rev.: 4126

links

5 lines of code changed in 1 file:

sbu062 2017-06-26 14:27 Rev.: 4125

readme for tools

32 lines of code changed in 1 file:

cje012 2017-06-22 12:44 Rev.: 4124

Changes to accommodate for the changes in the main code regarding last timestep. Growth speed is no longer based on the number of timesteps, but is using the 10% fastest, slowest and average individuals. Summary tables is also added to be able to see how many individuals are in each group (growth speed and end status).

79 lines of code changed in 1 file:

sbu062 2017-06-22 11:33 Rev.: 4123

moved pic refs in header soc

3 lines of code changed in 1 file:

sbu062 2017-06-22 11:26 Rev.: 4122

updated from work branch

8 lines of code changed in 1 file:

sbu062 2017-06-22 11:12 Rev.: 4121

added forgotten info on row x cols arrangement

8 lines of code changed in 1 file:

sbu062 2017-06-22 10:58 Rev.: 4120

added subsubsections in doxy

66 lines of code changed in 1 file:

sbu062 2017-06-22 09:18 Rev.: 4119

subsections in genome

3 lines of code changed in 1 file:

sbu062 2017-06-22 07:53 Rev.: 4118

small fix class in dpxy

1 lines of code changed in 1 file:

sbu062 2017-06-22 07:46 Rev.: 4117

minor fix format

2 lines of code changed in 1 file:

sbu062 2017-06-22 07:39 Rev.: 4116

added class hierarchy for agent classes

5 lines of code changed in 1 file:

sbu062 2017-06-22 07:26 Rev.: 4115

rename (crossover) backend to (genome_individual_crossover_homol_fix) - no rand in name to reflect its fixed nature

4 lines of code changed in 1 file:

sbu062 2017-06-22 07:05 Rev.: 4114

deleted references to obsolete sex determination based on scalar parameters SEXLOCUS_CHROMOSOME and SEXLOCUS_ALLELE, updated doc

44 lines of code changed in 1 file:

sbu062 2017-06-22 06:42 Rev.: 4113

added genetic sex determ code example in header doc

34 lines of code changed in 1 file:

sbu062 2017-06-22 06:31 Rev.: 4112

added more info on individual_genome in header doc

11 lines of code changed in 1 file:

sbu062 2017-06-21 15:53

continue filling skeleton (walk_random_motivations_expect)

180 lines of code changed in 2 files:

cje012 2017-06-21 14:47 Rev.: 4109

Added the timestep the animal reached max length, died or the last timestep if it was to slow to the ind matrix

6 lines of code changed in 1 file:

sbu062 2017-06-21 09:45 Rev.: 4108

fix doxy tag

4 lines of code changed in 1 file:

sbu062 2017-06-21 09:29 Rev.: 4107

include grouped perceptions in header doc list

11 lines of code changed in 1 file:

sbu062 2017-06-20 20:02 Rev.: 4106

doxygen links in spatial classes

17 lines of code changed in 1 file:

sbu062 2017-06-20 15:49 Rev.: 4105

typo

3 lines of code changed in 1 file:

sbu062 2017-06-20 15:43 Rev.: 4104

perception - appraisal-gos bold in list

10 lines of code changed in 1 file:

sbu062 2017-06-20 15:04 Rev.: 4103

ref to appraisal object in header doc

3 lines of code changed in 1 file:

cje012 2017-06-20 14:48 Rev.: 4102

Rewrote the cumcalc function to return a cumulative array with one more position than the original array, so the fist position is equal to 0, which makes calculations easier.

0 lines of code changed in 1 file:

cje012 2017-06-20 14:47 Rev.: 4101

Rewrote the cumcalc function to return a cumulative array with
svn commit functions.f90 -m Rewrote

8 lines of code changed in 1 file:

cje012 2017-06-20 14:43 Rev.: 4100

Rewrote the initiation for environment as it did not work properly.

8 lines of code changed in 1 file:

cje012 2017-06-20 14:42 Rev.: 4099

Added control plot for start environments in forward.

24 lines of code changed in 1 file:

sbu062 2017-06-20 12:40 Rev.: 4098

fix doxy formula

1 lines of code changed in 1 file:

sbu062 2017-06-20 12:35 Rev.: 4097

doxy fix (walk_random_do_this)

2 lines of code changed in 1 file:

sbu062 2017-06-20 11:49 Rev.: 4096

(walk_random_do_this) checked: fixed forgotten call to (size2mass_food), added mode doc to (walk_random_do_this)

31 lines of code changed in 1 file:

sbu062 2017-06-20 11:48 Rev.: 4095

doxy comments added to (walk_random_do_this)

4 lines of code changed in 1 file:

sbu062 2017-06-20 11:47 Rev.: 4094

added doxy formula

3 lines of code changed in 1 file:

sbu062 2017-06-20 11:46 Rev.: 4093

fix wrong optional in (walk_random_do_this)

1 lines of code changed in 1 file:

sbu062 2017-06-20 11:44 Rev.: 4092

smal fix

3 lines of code changed in 1 file:

sbu062 2017-06-20 11:43 Rev.: 4091

more doxy descriptions for individual hierarchyin header doc

8 lines of code changed in 1 file:

sbu062 2017-06-20 10:20 Rev.: 4090

skeleton tag for life cycle in header doc

3 lines of code changed in 1 file:

sbu062 2017-06-20 09:35 Rev.: 4089

fix typo

1 lines of code changed in 1 file:

sbu062 2017-06-20 09:31 Rev.: 4088

more doxy descriptions of the individual class layers in header doc

12 lines of code changed in 1 file:

sbu062 2017-06-20 09:19 Rev.: 4087

typo in doxy

1 lines of code changed in 1 file:

sbu062 2017-06-20 08:32 Rev.: 4086

more doxy descriptions of the genome in header doc

13 lines of code changed in 1 file:

sbu062 2017-06-20 08:30 Rev.: 4085

more doxy descriptions of spatial class in header doc

11 lines of code changed in 1 file:

sbu062 2017-06-20 08:29 Rev.: 4084

delete debug objects at cleandata

1 lines of code changed in 1 file:

sbu062 2017-06-20 08:27 Rev.: 4083

more doxy descriptions of perception and population init in header doc

30 lines of code changed in 1 file:

sbu062 2017-06-20 06:59 Rev.: 4082

more links to perception and gos

2 lines of code changed in 1 file:

sbu062 2017-06-20 06:57 Rev.: 4081

typo in doxy

1 lines of code changed in 1 file:

sbu062 2017-06-20 06:44 Rev.: 4080

added info on subdirs

8 lines of code changed in 1 file:

sbu062 2017-06-20 06:39 Rev.: 4079

more descriptions for inner and environmental perceptions

17 lines of code changed in 1 file:

sbu062 2017-06-19 23:59 Rev.: 4078

rearranged doxy doc

22 lines of code changed in 1 file:

sbu062 2017-06-19 23:36 Rev.: 4077

minor fix cleanup doxy in neuronal response functions

4 lines of code changed in 1 file:

sbu062 2017-06-19 22:57 Rev.: 4076

fix cleanup doxy in neuronal response function forms

35 lines of code changed in 1 file:

sbu062 2017-06-19 22:56 Rev.: 4075

more details on spatial perceptions in gos determination scheme header doxy doc

5 lines of code changed in 1 file:

sbu062 2017-06-19 22:35 Rev.: 4074

small fix doxy

8 lines of code changed in 1 file:

sbu062 2017-06-19 22:22 Rev.: 4073

fix comment only

2 lines of code changed in 1 file:

sbu062 2017-06-19 22:21 Rev.: 4072

invoke POSIX C call wrappers in (file_delete)

39 lines of code changed in 1 file:

sbu062 2017-06-19 21:42 Rev.: 4071

gos determination scheme in details in the header doxy doc

43 lines of code changed in 1 file:

sbu062 2017-06-19 21:41 Rev.: 4070

small fix gos workflow doc

3 lines of code changed in 1 file:

sbu062 2017-06-19 19:48 Rev.: 4069

fix gos workflow in doc

5 lines of code changed in 1 file:

sbu062 2017-06-19 19:35 Rev.: 4068

added GOS workflow for neurobio to doc header

14 lines of code changed in 1 file:

sbu062 2017-06-19 17:43 Rev.: 4067

another small fix

7 lines of code changed in 1 file:

cje012 2017-06-19 15:52 Rev.: 4066

Added new initiation of environment. Two versions, one which returns a real number with decimal points and one that returns a real number without decimal points.

38 lines of code changed in 1 file:

sbu062 2017-06-19 15:36 Rev.: 4065

smal fix

1 lines of code changed in 1 file:

sbu062 2017-06-19 15:18 Rev.: 4064

initial skeleton for (walk_random_motivations_expect)

29 lines of code changed in 1 file:

sbu062 2017-06-19 15:17 Rev.: 4063

(walk_random_do_this) is generally ready, needs more checking

62 lines of code changed in 1 file:

sbu062 2017-06-19 15:16 Rev.: 4062

initial skeleton for (walk_random_do_this)

130 lines of code changed in 1 file:

cje012 2017-06-19 15:04 Rev.: 4061

Added a new function rcumu that pick a random value in a 1D array containing cumulative probabilites and retuen the position of the nearest value in the array by rounding down.

18 lines of code changed in 1 file:

tla051 2017-06-19 14:52 Rev.: 4060

qsw0 calculates light based on the HYCOM model

78 lines of code changed in 1 file:

tla051 2017-06-19 14:50 Rev.: 4059

updated light calculations in subroutine qsw0 included

48 lines of code changed in 1 file:

cje012 2017-06-19 12:56 Rev.: 4058

Added a function (rreal) for calculating random real numbers within an interval (a <= r < b). Also edited the function rint to look similar to the rreal function.

36 lines of code changed in 1 file:

cje012 2017-06-19 11:38 Rev.: 4057

Added function for calculating cumulative values in an array, and returning these values as a new array of equal length.

24 lines of code changed in 1 file:

sbu062 2017-06-19 09:06 Rev.: 4056

small fix

1 lines of code changed in 1 file:

sbu062 2017-06-19 09:05 Rev.: 4055

set keywords

1 lines of code changed in 1 file:

sbu062 2017-06-19 08:55 Rev.: 4054

added tag

1 lines of code changed in 1 file:

sbu062 2017-06-19 08:53 Rev.: 4053

fix data file, get from base data name

2 lines of code changed in 1 file:

sbu062 2017-06-19 08:52 Rev.: 4052

added tools dir for accesory model scripts etc, gnuplot script for 2d and 3d movement history

34 lines of code changed in 1 file:

sbu062 2017-06-17 10:08 Rev.: 4051

added nearest point

457 lines of code changed in 4 files:

sbu062 2017-06-16 16:59 Rev.: 4050

merged from work branch

40 lines of code changed in 8 files:

sbu062 2017-06-16 12:40 Rev.: 4049

fixed last pieces of the obsolete ACCELERATE class, now WALK_RANDOM

5 lines of code changed in 1 file:

sbu062 2017-06-16 12:31 Rev.: 4048

doxy fix interfaces

2 lines of code changed in 1 file:

sbu062 2017-06-16 11:56 Rev.: 4047

deleted ACCELERATE and DECELERATE classes, instead behaviour repertoire now includes WALK_RANDOM

19 lines of code changed in 1 file:

sbu062 2017-06-16 11:55 Rev.: 4046

fix doxy

15 lines of code changed in 1 file:

cje012 2017-06-16 11:51 Rev.: 4045

Updated with new values thanks to Jacqueline :)

11 lines of code changed in 1 file:

cje012 2017-06-16 11:10 Rev.: 4044

Removed plotting for growth.g ~ somatic.weight for now, as it does not seem to work properly.

0 lines of code changed in 1 file:

sbu062 2017-06-16 11:00 Rev.: 4043

(distance_get) for APPROACH class

32 lines of code changed in 1 file:

sbu062 2017-06-16 11:00 Rev.: 4042

did (get_object) for APPROACH class

15 lines of code changed in 1 file:

sbu062 2017-06-16 10:01 Rev.: 4041

rename in APPROACH, target_spatial better reflects the facty that it is a type not class

3 lines of code changed in 1 file:

sbu062 2017-06-16 09:44 Rev.: 4040

added weblink to main page in doxy main header

3 lines of code changed in 1 file:

sbu062 2017-06-16 09:41 Rev.: 4039

doxy cleanup on nearest object reciprocal object/id functions, additional notes on intent(out) params

29 lines of code changed in 1 file:

cje012 2017-06-16 08:57 Rev.: 4038

Fixed error in one of the new forwards plots (growth~weight_somatic).

4 lines of code changed in 1 file:

sbu062 2017-06-16 08:41 Rev.: 4037

reformatted link

2 lines of code changed in 1 file:

cje012 2017-06-16 08:41 Rev.: 4036

Added plot to forward with structural weight (g) against growth (g).

66 lines of code changed in 1 file:

sbu062 2017-06-16 08:29 Rev.: 4035

deleted debug code for (geo_poly2d_dist_point_to_section) subroutine

0 lines of code changed in 1 file:

sbu062 2017-06-16 08:29 Rev.: 4034

(geo_poly2d_dist_point_to_section) converted to subroutine, also returns nearest point coordinate

55 lines of code changed in 1 file:

sbu062 2017-06-16 00:16 Rev.: 4033

another fix doxy comment

1 lines of code changed in 1 file:

sbu062 2017-06-16 00:01 Rev.: 4032

fix doxy comments

7 lines of code changed in 1 file:

sbu062 2017-06-15 23:51 Rev.: 4031

fixed_z now obsolete, deleted

0 lines of code changed in 1 file:

sbu062 2017-06-15 23:46 Rev.: 4030

(geo_poly2d_dist_point_to_section) is fully ready, debug code deleted

2 lines of code changed in 1 file:

sbu062 2017-06-15 23:10 Rev.: 4029

interface name to (distance_segment2d)

2 lines of code changed in 1 file:

sbu062 2017-06-15 22:41 Rev.: 4028

added type-bound interface

5 lines of code changed in 1 file:

sbu062 2017-06-15 22:40 Rev.: 4027

small fixes and moves, (geo_poly2d_dist_point_to_section) is now ready

18 lines of code changed in 1 file:

sbu062 2017-06-15 22:26 Rev.: 4026

added plot for calculation of the distance from a spatial object to a line segment

1882 lines of code changed in 4 files:

sbu062 2017-06-15 21:57 Rev.: 4025

SO source added

2 lines of code changed in 1 file:

sbu062 2017-06-15 21:56 Rev.: 4024

delete premature 3d computational geometry primitives and operators, unused so far

0 lines of code changed in 1 file:

sbu062 2017-06-15 21:55 Rev.: 4023

reuse squared distance p1 p2 already obtained; fix doxy formula

3 lines of code changed in 1 file:

sbu062 2017-06-15 21:54 Rev.: 4022

fully implemented (geo_poly2d_dist_point_to_section) calculating the distance from point to a finite line section

41 lines of code changed in 1 file:

sbu062 2017-06-15 21:53

intermediate debug code with dot_product explicit

65 lines of code changed in 2 files:

sbu062 2017-06-15 21:52 Rev.: 4019

added another wrong implementation for unlimited line, not segment

36 lines of code changed in 1 file:

sbu062 2017-06-15 21:51 Rev.: 4018

rudimentary computationalø geometry primitives in 2d and 3d with user operators, distance from point to two-point line segment primitive in 2D

172 lines of code changed in 1 file:

sbu062 2017-06-15 21:50 Rev.: 4017

small note on box-based versus polyhedron-based environment

4 lines of code changed in 1 file:

tla051 2017-06-15 09:28 Rev.: 4016

gut = gut_new included

2 lines of code changed in 1 file:

sbu062 2017-06-15 09:20 Rev.: 4015

numerical PI

2 lines of code changed in 1 file:

sbu062 2017-06-15 09:20 Rev.: 4014

renamed to (environment_get_nearest_point_in_outside_obj) for clarity

3 lines of code changed in 1 file:

sbu062 2017-06-15 09:18 Rev.: 4013

starting (nearest_target) for environment, just skeleton now

27 lines of code changed in 1 file:

tla051 2017-06-15 08:56 Rev.: 4012

gut_max converted to J, debug lines for stable environments and prey abundances added

103 lines of code changed in 1 file:

sbu062 2017-06-15 08:53 Rev.: 4011

added lgpl

2 lines of code changed in 1 file:

sbu062 2017-06-15 08:48 Rev.: 4010

added gpl

6 lines of code changed in 1 file:

cje012 2017-06-14 14:25 Rev.: 4009

Added option for titles for forward figures, either as user defined title or by setting the y-axis as the title of the figure.

28 lines of code changed in 1 file:

sbu062 2017-06-14 12:21 Rev.: 4008

got rid of unused data component timestep of the ENVIRONMENT object

2 lines of code changed in 1 file:

sbu062 2017-06-14 12:20 Rev.: 4007

small fix doxy

7 lines of code changed in 1 file:

cje012 2017-06-14 11:55 Rev.: 4006

Changed ggplot2 theme from classic to bw. Added a max limit for the number of individual that should be plotted in forward (ind.bin)

11 lines of code changed in 1 file:

sbu062 2017-06-14 09:48 Rev.: 4005

updated wiki lnk

4 lines of code changed in 1 file:

sbu062 2017-06-14 02:09 Rev.: 4004

changed open hedtools repo to teg_uib

3 lines of code changed in 1 file:

sbu062 2017-06-13 20:12 Rev.: 4003

style: move headers on top of module keyword

3 lines of code changed in 4 files:

sbu062 2017-06-13 18:56

updated doc abstract

12 lines of code changed in 2 files:

sbu062 2017-06-13 18:40 Rev.: 4000

fix orderpack ref

1 lines of code changed in 1 file:

sbu062 2017-06-13 18:35 Rev.: 3999

delete references to BASE_ERRORS.f90 in templates

3 lines of code changed in 1 file:

sbu062 2017-06-13 18:33 Rev.: 3998

add credit to ieee gfortran modules

2 lines of code changed in 1 file:

sbu062 2017-06-13 18:21 Rev.: 3997

typo fix

2 lines of code changed in 1 file:

sbu062 2017-06-13 18:17 Rev.: 3996

added list of credits to README

10 lines of code changed in 1 file:

sbu062 2017-06-13 17:50 Rev.: 3995

DELETED references to unused error modules BASE_ERRORS.f90 following their deletion from HEDTOOLS

3 lines of code changed in 1 file:

sbu062 2017-06-13 17:47 Rev.: 3994

DELETED obsolete errors modules BASE_ERRORS.f90, they have not been used for a long time. NB: UPDATE DEPENDENT PROJECT(s) MAKEFILE(s) in case of build errors and report them to SERGEY!

3 lines of code changed in 2 files:

sbu062 2017-06-13 16:45

small fix

3 lines of code changed in 2 files:

sbu062 2017-06-13 16:44 Rev.: 3991

added link to open Bitbucked repo

5 lines of code changed in 1 file:

sbu062 2017-06-13 12:43 Rev.: 3990

added fresh versions of Windows tools, downloads

6 lines of code changed in 1 file:

sbu062 2017-06-13 11:49 Rev.: 3989

fixed doxy comments

8 lines of code changed in 1 file:

sbu062 2017-06-13 11:39 Rev.: 3988

documented interface and fix doxy comments in (escape_dart_do_execute)

9 lines of code changed in 1 file:

sbu062 2017-06-13 11:39 Rev.: 3987

fully implemented (escape_dart_do_execute)

23 lines of code changed in 1 file:

sbu062 2017-06-13 11:39 Rev.: 3986

time_step_model is not used explicitly in the (execute) method

3 lines of code changed in 1 file:

sbu062 2017-06-13 11:38 Rev.: 3985

escape dart: take care of the predator_object that is optional

24 lines of code changed in 1 file:

sbu062 2017-06-13 11:38 Rev.: 3984

skeleton for (escape_dart_do_execute); now do use cost of moving in (escape_dart_motivations_expect)

73 lines of code changed in 1 file:

sbu062 2017-06-13 10:29 Rev.: 3983

interface name (expectancies_calculate)

6 lines of code changed in 1 file:

sbu062 2017-06-13 10:17 Rev.: 3982

added norable variable section in (freeze_motivations_expect) and (escape_dart_motivations_expect)

28 lines of code changed in 1 file:

sbu062 2017-06-13 10:17 Rev.: 3981

fullly implemented (escape_dart_motivations_expect), needs checking yet

257 lines of code changed in 1 file:

sbu062 2017-06-13 10:16 Rev.: 3980

escape distance in (escape_dart_do_this) can now be stochastic

25 lines of code changed in 1 file:

sbu062 2017-06-13 07:59 Rev.: 3979

merged latest changes from work branch, filesystem posix utils added

305 lines of code changed in 4 files:

sbu062 2017-06-13 07:45 Rev.: 3978

fix doc

8 lines of code changed in 1 file:

sbu062 2017-06-13 07:25 Rev.: 3977

added stochastic escape distance parameter CV

5 lines of code changed in 1 file:

sbu062 2017-06-13 07:24 Rev.: 3976

added new parameters of (FS_MKDIR) to doc

14 lines of code changed in 1 file:

sbu062 2017-06-13 07:17 Rev.: 3975

fox iostat in writeable check in (FS_MKDIR)

7 lines of code changed in 1 file:

sbu062 2017-06-13 07:17 Rev.: 3974

check dir writeable in (FS_MKDIR)

18 lines of code changed in 1 file:

sbu062 2017-06-12 19:15 Rev.: 3973

fix default permission for dir

2 lines of code changed in 1 file:

sbu062 2017-06-12 19:07 Rev.: 3972

small comment added, octal permission

2 lines of code changed in 1 file:

sbu062 2017-06-12 18:42 Rev.: 3971

changed name prefix for POSIX filesystem procedures to FS_ from CSV_; added them into the doc file

83 lines of code changed in 2 files:

sbu062 2017-06-12 18:10 Rev.: 3970

fix comments POSIX filesystem functions

3 lines of code changed in 1 file:

sbu062 2017-06-12 18:09 Rev.: 3969

implemented POSIX functions CSV_REMOVE

51 lines of code changed in 1 file:

sbu062 2017-06-12 18:09 Rev.: 3968

implemented POSIX functions CSV_RENAME CSV_UNLINK

101 lines of code changed in 1 file:

sbu062 2017-06-12 16:33 Rev.: 3967

added .hg.version from hook into ignore

5 lines of code changed in 1 file:

sbu062 2017-06-12 16:33 Rev.: 3966

test hooks

1 lines of code changed in 1 file:

sbu062 2017-06-12 16:32 Rev.: 3965

added .hg.version from hook into ignore

5 lines of code changed in 1 file:

sbu062 2017-06-12 16:32 Rev.: 3964

test hook

1 lines of code changed in 1 file:

cje012 2017-06-12 13:10 Rev.: 3963

Minor changes to comments and moved rm(list=ls()) from the end of the script to the beginning.

18 lines of code changed in 1 file:

cje012 2017-06-12 12:49 Rev.: 3962

Renamed a variable.

2 lines of code changed in 1 file:

cje012 2017-06-12 12:45 Rev.: 3961

Fixed error were the fitness array, was not read in from the binary fitness file if user choose only forward.

2 lines of code changed in 1 file:

sbu062 2017-06-12 12:10 Rev.: 3960

fix C null string termination in (CSV_MKDIR)

1 lines of code changed in 1 file:

sbu062 2017-06-12 11:50 Rev.: 3959

added (CSV_MKDIR) to doc file

23 lines of code changed in 1 file:

sbu062 2017-06-12 11:50 Rev.: 3958

implemented function (CSV_MKDIR) to create directory, uses POSIX C call interface

44 lines of code changed in 1 file:

cje012 2017-06-12 11:23 Rev.: 3957

Changed to accomodate the name change of the file containing module for reading and writing arrays to binary files (binary_write.f90 -> binary_IO.f90)

1 lines of code changed in 1 file:

cje012 2017-06-12 11:15 Rev.: 3956

Renamed binary_write.f90 into binary_IO.f90 as this module now does more than just writing arrays to binary files.

989 lines of code changed in 2 files:

cje012 2017-06-12 11:12 Rev.: 3955

Added error checking to all subroutines for reading binary files to arrays.

140 lines of code changed in 1 file:

cje012 2017-06-12 08:41 Rev.: 3954

Minor changes.

1 lines of code changed in 1 file:

jwe041 2017-06-12 07:49

400 lines of code changed in 2 files:

sbu062 2017-06-11 10:44 Rev.: 3951

small note on fake perceptions needed in dart; more messegae in non-debug

7 lines of code changed in 1 file:

sbu062 2017-06-11 10:43 Rev.: 3950

continue filling in (escape_dart_motivations_expect)

35 lines of code changed in 1 file:

sbu062 2017-06-10 19:22 Rev.: 3949

file read errors should go to system-specific standard error device

15 lines of code changed in 1 file:

sbu062 2017-06-09 20:48 Rev.: 3948

added refs

8 lines of code changed in 1 file:

sbu062 2017-06-09 19:16 Rev.: 3947

added a small warning on drand()

37 lines of code changed in 1 file:

sbu062 2017-06-09 18:40 Rev.: 3946

added (GET_FREE_FUNIT) function and use it everywhere to avoid unit conflicts if many files are opened in parallel

186 lines of code changed in 1 file:

sbu062 2017-06-09 18:21 Rev.: 3945

small fix description

4 lines of code changed in 1 file:

sbu062 2017-06-09 18:18 Rev.: 3944

fixed error reportying in (matrix_to_binary_int_5d); added file open error treatment in diagnostic functions (binary_get_rank) and (binary_get_dims)

31 lines of code changed in 1 file:

sbu062 2017-06-09 14:52 Rev.: 3943

removed tmp work branch for binary read

0 lines of code changed in 1 file:

sbu062 2017-06-09 14:51 Rev.: 3942

deleted branch, not used really

0 lines of code changed in 1 file:

sbu062 2017-06-09 14:49 Rev.: 3941

added error reporting to binary write also: (matrix_to_binary_int_5d)

14 lines of code changed in 1 file:

sbu062 2017-06-09 14:34 Rev.: 3940

added file open error reporting in binary read subroutine (binary_to_matrix_int_5d)

35 lines of code changed in 1 file:

cje012 2017-06-09 14:01 Rev.: 3939

Fixed error in forwards, where reserves_max_new was used instead of reserves_max.

5 lines of code changed in 1 file:

sbu062 2017-06-09 14:00 Rev.: 3938

added file open error reporting in bibary read functions

41 lines of code changed in 1 file:

sbu062 2017-06-09 13:04 Rev.: 3937

fixed allocatable argument in binary read subroutines, now assumed shape array

13 lines of code changed in 2 files:

sbu062 2017-06-09 12:48 Rev.: 3936

made 5d function to read binary data, changed main hormone code to use it instead of generic subroutine - it had bug: require allocatable matrix array as in binary_to_matrix

198 lines of code changed in 2 files:

cje012 2017-06-09 12:35 Rev.: 3935

Added if loop for choices between reading strategy from file or running backwards.

175 lines of code changed in 1 file:

cje012 2017-06-09 12:34 Rev.: 3934

Added an alternative to choose between only running forwards or both bacward and forward.

16 lines of code changed in 1 file:

cje012 2017-06-09 12:25 Rev.: 3933

Added subroutines for reading from binary files, but the code does not work now.

313 lines of code changed in 1 file:

sbu062 2017-06-09 11:20 Rev.: 3932

disabled debug code for predator risk for massive group data, works okay now

26 lines of code changed in 1 file:

sbu062 2017-06-09 11:15 Rev.: 3931

more messages and timing in non-debug mode, essential with huge n of predators

4 lines of code changed in 1 file:

sbu062 2017-06-09 09:46 Rev.: 3930

added copy of stochastic trunk

0 lines of code changed in 1 file:

sbu062 2017-06-09 09:27 Rev.: 3929

added readme

9 lines of code changed in 1 file:

jwe041 2017-06-09 08:26

160 lines of code changed in 4 files:

sbu062 2017-06-08 19:33 Rev.: 3924

fix readme

0 lines of code changed in 1 file:

sbu062 2017-06-08 19:31 Rev.: 3923

added readme

35 lines of code changed in 1 file:

sbu062 2017-06-08 15:27 Rev.: 3922

more info for debug code

2 lines of code changed in 1 file:

sbu062 2017-06-08 15:26 Rev.: 3921

added small logging for debug timing in debug code

3 lines of code changed in 1 file:

sbu062 2017-06-08 15:26 Rev.: 3920

deleted HeadURL tag, not supported by Mercurial

0 lines of code changed in 2 files:

sbu062 2017-06-08 15:26 Rev.: 3919

in Makefile also added warn options for Windows

1 lines of code changed in 1 file:

sbu062 2017-06-08 15:26 Rev.: 3918

fixed non-provided dummy is_freezing in (predator_capture_risk_calculate_fish_group), strangely bug didn't affect gfortran, only appear in ifort; in Makefile added option to check argument mismatches in generic interfaces

2 lines of code changed in 2 files:

sbu062 2017-06-08 13:42 Rev.: 3917

do now parallel concurrent in sub-procedures of (predator_capture_risk_calculate_fish_group)

19 lines of code changed in 1 file:

cje012 2017-06-08 12:53 Rev.: 3916

Sergey added the possibility to arrays from binary files. Thank you so much :)

262 lines of code changed in 1 file:

sbu062 2017-06-08 12:01 Rev.: 3915

implemented basic diagnostic utils as well as read procedures for binary files in the CJ binary format

0 lines of code changed in 2 files:

tla051 2017-06-08 08:47 Rev.: 3914

light extinction over depth in clear water added for comparison

16 lines of code changed in 1 file:

sbu062 2017-06-07 20:15 Rev.: 3912

more doxy docs in (predator_capture_risk_calculate_fish_group)

17 lines of code changed in 1 file:

sbu062 2017-06-07 16:58 Rev.: 3911

(adjust_risk_nonpar_fixed) set as the default

2 lines of code changed in 1 file:

sbu062 2017-06-07 16:58 Rev.: 3910

adde (adjust_risk_dilute_all) to call list

2 lines of code changed in 1 file:

sbu062 2017-06-07 16:48 Rev.: 3909

more doxy comments in (adjust_risk_dilute_nofirst) and (adjust_risk_dilute_all)

15 lines of code changed in 1 file:

sbu062 2017-06-07 16:35 Rev.: 3908

fixed wrong array bound in (adjust_risk_dilute_nofirst) and (adjust_risk_dilute_all); added logging linearly spaced dilution factor array

12 lines of code changed in 1 file:

sbu062 2017-06-07 15:06 Rev.: 3907

added logging no-prey cases in (predator_capture_risk_calculate_fish_group)

9 lines of code changed in 1 file:

sbu062 2017-06-07 14:59 Rev.: 3906

fixed doxy table, header fields seem mandatory

22 lines of code changed in 1 file:

sbu062 2017-06-07 14:54 Rev.: 3905

fixed all other sub-procedures of (predator_capture_risk_calculate_fish_group), deleting baseline risk calculations, it is now in the main body step 2

0 lines of code changed in 1 file:

sbu062 2017-06-07 14:54 Rev.: 3904

in (predator_capture_risk_calculate_fish_group) baseline risk calculation moved to step 2 loop, no extra loop previous step 3 needed

15 lines of code changed in 1 file:

sbu062 2017-06-07 14:53 Rev.: 3903

(predator_capture_risk_calculate_fish_group) fixed: all baseline risks calculated as step 3; (adjust_risk_nonpar_fixed) fixed generation of nonparametric grid abscissa avoiding negavive risks; in (risk_fish) now checking if distance < visibility resulting in zero risk

64 lines of code changed in 1 file:

sbu062 2017-06-07 12:51 Rev.: 3902

minor fix log

6 lines of code changed in 1 file:

sbu062 2017-06-07 12:07 Rev.: 3901

fix note, don't need link to main any more

1 lines of code changed in 1 file:

sbu062 2017-06-07 12:04 Rev.: 3900

fix note

1 lines of code changed in 1 file:

sbu062 2017-06-07 12:01 Rev.: 3899

reformatted as note

4 lines of code changed in 1 file:

sbu062 2017-06-07 11:59 Rev.: 3898

moved debug csv data output part into the main head procedure (predator_capture_risk_calculate_fish_group)

57 lines of code changed in 1 file:

sbu062 2017-06-07 11:53 Rev.: 3897

no adjustment simlistic version (adjust_risk_nonpar_noadjust) sub-procedure added to (predator_capture_risk_calculate_fish_group)

40 lines of code changed in 1 file:

sbu062 2017-06-07 11:40 Rev.: 3896

doxy reformat in (adjust_risk_dilute_fixed)

2 lines of code changed in 1 file:

sbu062 2017-06-07 11:35 Rev.: 3895

fix list layers in (adjust_risk_dilute_fixed)

8 lines of code changed in 1 file:

sbu062 2017-06-07 11:32 Rev.: 3894

moved table into (adjust_risk_dilute_fixed)

29 lines of code changed in 1 file:

sbu062 2017-06-07 11:22 Rev.: 3893

fix header doxy table in (adjust_risk_dilute_fixed)

22 lines of code changed in 1 file:

sbu062 2017-06-07 11:16 Rev.: 3892

rearranged debug save risk dilution data in (adjust_risk_dilute_fixed), added doxy table example

37 lines of code changed in 1 file:

sbu062 2017-06-07 11:16 Rev.: 3891

added debug save risk dilution data in (adjust_risk_dilute_fixed)

55 lines of code changed in 1 file:

tla051 2017-06-06 12:54 Rev.: 3890

updated plots

7 lines of code changed in 1 file:

cje012 2017-06-06 12:52 Rev.: 3889

Made script run faster by removing a loop and replacing it with tidyverse code. Also added a shadow behind the lines of the forward plots based on growth speed and start environment to show the spread of the different individuals in each group.

46 lines of code changed in 1 file:

tla051 2017-06-06 12:50 Rev.: 3888

plots of vertical environmental gradients and predator prey interactions

4 lines of code changed in 1 file:

sbu062 2017-06-06 12:08

small fix doxy

4 lines of code changed in 3 files:

sbu062 2017-06-06 12:04 Rev.: 3884

plot insert made more visible

2494 lines of code changed in 2 files:

sbu062 2017-06-06 11:53 Rev.: 3883

added group predation risk plot for doxy

11732 lines of code changed in 4 files:

tla051 2017-06-06 08:36 Rev.: 3882

annotation updated

6 lines of code changed in 1 file:

tla051 2017-06-06 08:34 Rev.: 3881

minor fixes

50 lines of code changed in 1 file:

sbu062 2017-06-05 17:01 Rev.: 3880

initial implementation of full risk dilution, (adjust_risk_dilute_all)

80 lines of code changed in 1 file:

sbu062 2017-06-05 15:39 Rev.: 3879

added docs for special cases in (adjust_risk_dilute_nofirst)

12 lines of code changed in 1 file:

sbu062 2017-06-03 14:39 Rev.: 3878

added more description for plot

2 lines of code changed in 1 file:

sbu062 2017-06-03 14:34 Rev.: 3877

added more description for plot

6 lines of code changed in 1 file:

sbu062 2017-06-03 14:21 Rev.: 3876

added doxy dilution plot for (adjust_risk_dilute_nofirst)

3080 lines of code changed in 3 files:

sbu062 2017-06-03 13:56 Rev.: 3875

added more details doxy

3 lines of code changed in 1 file:

sbu062 2017-06-03 13:52 Rev.: 3874

added labels on plots

308 lines of code changed in 2 files:

sbu062 2017-06-03 13:46 Rev.: 3873

fixed plots

1718 lines of code changed in 2 files:

sbu062 2017-06-03 13:44 Rev.: 3872

test doxy title

1 lines of code changed in 1 file:

sbu062 2017-06-03 13:43 Rev.: 3871

small fix doxy

1 lines of code changed in 1 file:

sbu062 2017-06-03 13:39 Rev.: 3870

added doxy plot for nonparametric predator dilution factor in (adjust_risk_nonpar_fixed)

5833 lines of code changed in 3 files:

sbu062 2017-06-03 11:42 Rev.: 3869

fixed doxy formulas in (predator_capture_risk_calculate_fish_group)

2 lines of code changed in 1 file:

sbu062 2017-06-03 11:33 Rev.: 3868

fixed doxy links in (predator_capture_risk_calculate_fish_group)

3 lines of code changed in 1 file:

sbu062 2017-06-03 07:44 Rev.: 3867

merged from main devel branch

126 lines of code changed in 5 files:

sbu062 2017-06-03 05:56 Rev.: 3866

fix return in (adjust_risk_dilute_nofirst)

2 lines of code changed in 1 file:

sbu062 2017-06-03 05:55 Rev.: 3865

in (freeze_motivations_expect) fixes

63 lines of code changed in 1 file:

sbu062 2017-06-02 15:25 Rev.: 3864

white space formatted only

14 lines of code changed in 1 file:

sbu062 2017-06-02 15:21 Rev.: 3863

in (predator_capture_risk_calculate_fish_group) isolated fixed nonparametric-based risk adjustment into a separate sub-procedure (adjust_risk_nonpar_fixed); added an alternative adjustment with explicit dilution 1/N (adjust_risk_dilute_nofirst)

145 lines of code changed in 1 file:

sbu062 2017-06-02 15:21 Rev.: 3862

small fix doxy

1 lines of code changed in 1 file:

sbu062 2017-06-02 13:54 Rev.: 3861

added result to example

1 lines of code changed in 1 file:

sbu062 2017-06-02 13:52 Rev.: 3860

added linspace to doc

14 lines of code changed in 1 file:

sbu062 2017-06-02 13:44 Rev.: 3859

fix naming convention

3 lines of code changed in 1 file:

sbu062 2017-06-02 13:41 Rev.: 3858

implemented linspace routines

56 lines of code changed in 1 file:

sbu062 2017-06-02 12:48 Rev.: 3857

in (predator_capture_risk_calculate_fish_group) external interface

9 lines of code changed in 1 file:

sbu062 2017-06-02 12:48 Rev.: 3856

micro formatting, white space only

0 lines of code changed in 1 file:

sbu062 2017-06-02 12:35 Rev.: 3855

in (predator_capture_risk_calculate_fish_group) doc grid arrays

17 lines of code changed in 1 file:

sbu062 2017-06-02 12:11 Rev.: 3854

in (predator_capture_risk_calculate_fish_group) fixed and rearranged docs, the procedure now ready; added check for no visible prey agents

125 lines of code changed in 1 file:

sbu062 2017-06-02 12:10 Rev.: 3853

in (predator_capture_risk_calculate_fish_group) reduced size of arrays at declare, need only to keep PREDATOR_RISK_GROUP_SELECT_INDEX_PARTIAL elements

11 lines of code changed in 1 file:

sbu062 2017-06-01 16:42 Rev.: 3852

fix wrong int conversion in (predator_capture_risk_calculate_fish_group)

1 lines of code changed in 1 file:

sbu062 2017-06-01 16:36 Rev.: 3851

baseline risk, array size can be reduced to index array size in (predator_capture_risk_calculate_fish_group)

2 lines of code changed in 1 file:

sbu062 2017-06-01 16:30 Rev.: 3850

ranks deleted in (predator_capture_risk_calculate_fish_group)

2 lines of code changed in 1 file:

sbu062 2017-06-01 16:17 Rev.: 3849

small fix was wrong variable index

1 lines of code changed in 1 file:

sbu062 2017-06-01 16:13 Rev.: 3848

small fix avoid extra public parameter

4 lines of code changed in 1 file:

sbu062 2017-06-01 16:13 Rev.: 3847

initial implementation of predation risk for a group of agents with predator dilution effect (predator_capture_risk_calculate_fish_group); basic visibility method for arbitrary SPATIAL class objects (predator_capture_risk_calculate_fish_group)

337 lines of code changed in 1 file:

sbu062 2017-06-01 16:13 Rev.: 3846

implemented (visibility) method for the agent: (condition_agent_visibility_visual_range)

76 lines of code changed in 1 file:

sbu062 2017-06-01 16:13 Rev.: 3845

initial skeleton for (escape_dart_motivations_expect)

33 lines of code changed in 1 file:

cje012 2017-06-01 12:38 Rev.: 3844

Made the file more general, remember to make a Results folder

1 lines of code changed in 1 file:

cje012 2017-06-01 12:22 Rev.: 3843

Minor changes

0 lines of code changed in 1 file:

cje012 2017-06-01 12:08 Rev.: 3842

Added control plot with the 2 first individual for environment.

21 lines of code changed in 1 file:

cje012 2017-06-01 11:49 Rev.: 3841

Added plotting in forward seperating between how fast the inividuals grow up and their starting environment.

189 lines of code changed in 1 file:

May 2017 »

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