June 2019 Commit Log

Number of Commits:
95
Number of Active Developers:
6
cje012 2019-06-28 09:18 Rev.: 8479

Minor change

1 lines of code changed in 1 file:

sbu062 2019-06-26 12:40 Rev.: 8478

doc: merged latest changes in doc r8473:r8477

185 lines of code changed in 1 file:

sbu062 2019-06-26 12:34 Rev.: 8477

doc: updated to recent repo tree

43 lines of code changed in 1 file:

sbu062 2019-06-26 12:07 Rev.: 8474

doc: small fixes

2 lines of code changed in 1 file:

sbu062 2019-06-26 12:02 Rev.: 8473

doc: added on general modular reusable design

140 lines of code changed in 1 file:

jwe041 2019-06-24 12:34 Rev.: 8472

renamed

344 lines of code changed in 2 files:

jwe041 2019-06-24 12:32 Rev.: 8471

additional comments

14 lines of code changed in 2 files:

sbu062 2019-06-23 22:49 Rev.: 8470

merged latest changes from dev branch r8468
- doc fixed and adapted for compatibility with both
asciidoc and asciidoctor

48 lines of code changed in 2 files:

sbu062 2019-06-23 22:46 Rev.: 8469

merged latest changes in dev branch of HEDTOOLS

0 lines of code changed in 18 files:

sbu062 2019-06-23 13:21 Rev.: 8468

doc: asciidoctor compatibility notes, index terms more compatible

8 lines of code changed in 1 file:

sbu062 2019-06-23 09:07 Rev.: 8467

doc: added DOCFMT doc format to make help

2 lines of code changed in 1 file:

sbu062 2019-06-23 08:40 Rev.: 8466

web: fix typo

1 lines of code changed in 1 file:

sbu062 2019-06-23 08:38 Rev.: 8465

small fix

1 lines of code changed in 1 file:

sbu062 2019-06-23 08:37 Rev.: 8464

added FRIMEDBIO grant number

0 lines of code changed in 2 files:

sbu062 2019-06-23 08:32 Rev.: 8463

small fixes and compatibility with asciidoctor

35 lines of code changed in 1 file:

sbu062 2019-06-22 07:42 Rev.: 8462

doc: asciidoctor requires index

4 lines of code changed in 1 file:

sbu062 2019-06-21 13:27 Rev.: 8461

shorter history for faster running
- separate test run with long history required for complexity analysis

8 lines of code changed in 8 files:

sbu062 2019-06-21 13:15 Rev.: 8460

set parameters for specific model runs

0 lines of code changed in 32 files:

sbu062 2019-06-21 12:29 Rev.: 8457

foxed global bug causing GA_REPRODUCE_N_MIN reproducing sub-population in all cases

28 lines of code changed in 28 files:

jwe041 2019-06-20 13:36 Rev.: 8456

deleted M-foraging-fact (coefficient)

2 lines of code changed in 1 file:

jwe041 2019-06-20 13:34 Rev.: 8455

work on comments

158 lines of code changed in 3 files:

cje012 2019-06-20 13:28 Rev.: 8454

Minor change to figure C

1 lines of code changed in 1 file:

jwe041 2019-06-20 11:47 Rev.: 8453

renamed

65 lines of code changed in 2 files:

jwe041 2019-06-20 11:46 Rev.: 8452

renamed

118 lines of code changed in 2 files:

jwe041 2019-06-20 11:44 Rev.: 8451

changed name from parameters_stoch to parameters

71 lines of code changed in 2 files:

jwe041 2019-06-20 11:41 Rev.: 8450

0 lines of code changed in 1 file:

glj042 2019-06-20 09:01

New name

0 lines of code changed in 70 files:

glj042 2019-06-20 08:58 Rev.: 8447

new folder

0 lines of code changed in 56 files:

tla051 2019-06-19 05:47 Rev.: 8446

backup after coding break

83 lines of code changed in 4 files:

cje012 2019-06-17 11:08 Rev.: 8445

Renamed total lifetime mortality rate, to accumulated mortality risk.

2 lines of code changed in 1 file:

sbu062 2019-06-14 21:18 Rev.: 8444

(LOG_IEEE): log IEEE signalling, backport from r8442:r8443

756 lines of code changed in 14 files:

sbu062 2019-06-14 19:03 Rev.: 8443

(LOG_IEEE): force log if IS_DEBUG

6 lines of code changed in 1 file:

sbu062 2019-06-14 14:49 Rev.: 8442

(log_ieee) logs possible IEEE signalling conditions with tag
- tests pass

70 lines of code changed in 2 files:

sbu062 2019-06-14 13:58 Rev.: 8441

check IEEE signalling condition
- (ieee_error_reporting) logged after all important events

48 lines of code changed in 1 file:

sbu062 2019-06-14 13:02 Rev.: 8440

define real kind

6 lines of code changed in 1 file:

sbu062 2019-06-14 10:22 Rev.: 8439

fixed wrong commit, should have been folder scope

1 lines of code changed in 1 file:

sbu062 2019-06-14 09:54 Rev.: 8438

web: updated binary build HEDTOOLS to latest v1.3 r8437

1 lines of code changed in 1 file:

sbu062 2019-06-14 09:43 Rev.: 8437

deleted dev branch for HEDTOOLS 1.3

1 lines of code changed in 7 files:

sbu062 2019-06-14 09:29 Rev.: 8436

new version from r8435 (dev. r8433)

40284 lines of code changed in 89 files:

sbu062 2019-06-14 09:27 Rev.: 8435

merged development version of HEDTOOLS from r8433
- fixed explicit real kinds (no default real)
- Added ZEROFUN - find zero of an arbitrary function
without the use of derivatives (taken from AHA model)
- ARRAY_QSORT - quick sort of an array (see m_qsort,
taken from AHA model)

992 lines of code changed in 6 files:

sbu062 2019-06-14 09:11 Rev.: 8434

(ARRAY_QSORT) is the main interface name
- (qsort) can clash with IFPORT and ORACLE_F95
- defining parameter array with (*) size cannot be
supported on older compilers, notably Oracle f95

40 lines of code changed in 2 files:

sbu062 2019-06-14 08:54 Rev.: 8433

added (ARRAY_QSORT) from QSORT module
- doc also updated

261 lines of code changed in 3 files:

sbu062 2019-06-13 20:44 Rev.: 8432

shorter log message

15 lines of code changed in 15 files:

sbu062 2019-06-13 18:09 Rev.: 8431

disable debug fixed steps

1 lines of code changed in 1 file:

sbu062 2019-06-13 15:01

backported r8427:r8428 IPO now works in ifort

39 lines of code changed in 13 files:

sbu062 2019-06-13 14:53 Rev.: 8428

better comment (fix typo) on intel IPO

1 lines of code changed in 1 file:

sbu062 2019-06-13 14:43 Rev.: 8427

IPO: interprocedural optimisation started working in ifort
- ifort 19.0.4.243 20190416

3 lines of code changed in 1 file:

sbu062 2019-06-13 14:04 Rev.: 8426

added benchmark for (ARRAY_INDEX) from HEDTOOLS
- indexing is quite slower than simple sorting

125 lines of code changed in 2 files:

sbu062 2019-06-13 09:30 Rev.: 8425

backported (ieee_error_reporting) r8421:r8423 to older models

213 lines of code changed in 10 files:

sbu062 2019-06-13 08:52 Rev.: 8424

backported (ieee_error_reporting) r8421:r8423

369 lines of code changed in 18 files:

sbu062 2019-06-13 07:04 Rev.: 8423

added tags for ieee check call

3 lines of code changed in 1 file:

lhi088 2019-06-12 15:09 Rev.: 8422

added loop with different mating systems
added asexual reproduction
added a random mating population
added a slot for a selfing population
introduced mortality due to low resources
added condition-dependent reproduction by letting all low-resource individuals die
removed noise around recruitment function
changed Beverton-Holt function

170 lines of code changed in 1 file:

sbu062 2019-06-12 11:43 Rev.: 8421

(ieee_error_reporting) added optional text parameter to easily locate IEEE errors

41 lines of code changed in 2 files:

sbu062 2019-06-12 10:34 Rev.: 8420

normalise debug steps and fitness function

2 lines of code changed in 2 files:

sbu062 2019-06-12 10:26 Rev.: 8419

script to prepare data for behaviour string complexity analysis

8 lines of code changed in 1 file:

sbu062 2019-06-11 12:46 Rev.: 8418

very inclusive threshold value for inclusion in reproduction

3 lines of code changed in 1 file:

sbu062 2019-06-11 09:27 Rev.: 8417

select at minimum only growing agents for reproduction in GA, min proportion reproducing increased

3 lines of code changed in 2 files:

sbu062 2019-06-11 09:05 Rev.: 8416

too small min n of reproducing agents

1 lines of code changed in 1 file:

sbu062 2019-06-08 10:02 Rev.: 8415

testing fixed life span

2 lines of code changed in 1 file:

sbu062 2019-06-08 07:55 Rev.: 8414

debug increasing fitness: fixed (fitness_mass_incr_abs), in (fitness_energy_reprfact_mass) fixed MIN_FIT_ALIVE
- MIN_FIT_ALIVE was to start from -999, must -1001 due to reverse

14 lines of code changed in 2 files:

sbu062 2019-06-07 09:36 Rev.: 8413

debugging increasing fitness function, debug fixed steps off

42 lines of code changed in 2 files:

sbu062 2019-06-07 07:29 Rev.: 8412

debug version: fixed comments on reverse fitness, initial implementation for proportions fitness

22 lines of code changed in 6 files:

sbu062 2019-06-06 18:01 Rev.: 8411

development branch for normal non-reverse fitness
- initial tests

0 lines of code changed in 8 files:

sbu062 2019-06-06 13:15 Rev.: 8410

backported reverse sorfing in (qsort) as in r8409

169 lines of code changed in 13 files:

sbu062 2019-06-06 12:55 Rev.: 8409

added reverse sorting in (qsort)

13 lines of code changed in 1 file:

sbu062 2019-06-05 06:56 Rev.: 8408

titles conform markdown

15 lines of code changed in 1 file:

sbu062 2019-06-04 22:30 Rev.: 8407

added more benchmarking results for Oracle f95
- f95 has standard fortran library with a compatible version of (qsort)
- TEGsvn version is faster also with f95

147 lines of code changed in 1 file:

sbu062 2019-06-04 21:58 Rev.: 8406

more benchmark tests, without writing the CSV file
- CSV output is slow and can interfere with (qsort) performance
- Oracle f95 Fortran is remarkably fast on file output
perhaps due to very aggressive caching

148 lines of code changed in 1 file:

sbu062 2019-06-04 21:33 Rev.: 8405

added the results of (qsort) benchmarks
- Intel IFPORT versus TEGsvn
- running on SB's home PC (hostname `herring`)

51 lines of code changed in 3 files:

sbu062 2019-06-04 21:15 Rev.: 8404

added CSV_IO for testing

5070 lines of code changed in 1 file:

sbu062 2019-06-04 21:13 Rev.: 8403

added intel qsort test and benchmarks

199 lines of code changed in 3 files:

sbu062 2019-06-04 15:19 Rev.: 8402

deleted dev branch

0 lines of code changed in 4 files:

sbu062 2019-06-04 15:12 Rev.: 8401

fix comment

1 lines of code changed in 1 file:

sbu062 2019-06-04 15:00 Rev.: 8400

copieq m_qsort module from dev branch

277 lines of code changed in 2 files:

sbu062 2019-06-04 14:58 Rev.: 8399

added keywords and file header docs

12 lines of code changed in 2 files:

sbu062 2019-06-04 14:55 Rev.: 8398

rearragged, added docs

257 lines of code changed in 2 files:

sbu062 2019-06-04 14:30 Rev.: 8397

integer version and optional reverse sort paramer

90 lines of code changed in 2 files:

sbu062 2019-06-04 14:07 Rev.: 8396

alternative real kind versions and public interface

76 lines of code changed in 1 file:

sbu062 2019-06-04 13:57 Rev.: 8395

separate test program

14 lines of code changed in 2 files:

sbu062 2019-06-04 13:46 Rev.: 8394

initial version of qsort, unchanged

0 lines of code changed in 1 file:

tla051 2019-06-04 08:39 Rev.: 8393

foraging interactions module, contains i.a. function for clearance rate

1 lines of code changed in 1 file:

tla051 2019-06-04 08:38 Rev.: 8392

changed eye sensitivity

74 lines of code changed in 1 file:

tla051 2019-06-04 08:37 Rev.: 8391

solved bugs in the light transmittance loop

72 lines of code changed in 1 file:

sbu062 2019-06-03 22:43 Rev.: 8390

stupid seminar code

111 lines of code changed in 3 files:

sbu062 2019-06-03 17:24 Rev.: 8389

small note

1 lines of code changed in 1 file:

sbu062 2019-06-03 17:23 Rev.: 8388

random init of Y is useless

0 lines of code changed in 1 file:

sbu062 2019-06-03 17:18 Rev.: 8387

deleted development branch

0 lines of code changed in 4 files:

sbu062 2019-06-03 13:49 Rev.: 8386

author note

2 lines of code changed in 2 files:

sbu062 2019-06-03 12:40 Rev.: 8385

fix literals, kind parameter

1 lines of code changed in 1 file:

sbu062 2019-06-03 11:55 Rev.: 8384

fix wrong literal

1 lines of code changed in 1 file:

sbu062 2019-06-03 11:37 Rev.: 8383

test is separate dir

5146 lines of code changed in 4 files:

sbu062 2019-06-03 11:32

(linearfit): copied files from dev. branch

289 lines of code changed in 3 files:

sbu062 2019-06-03 11:24 Rev.: 8378

added svn keywords

12 lines of code changed in 2 files:

sbu062 2019-06-03 11:20 Rev.: 8377

(linearfit): module to calculate least squares fit using LAPACK (SGELS) / (DGELS)

0 lines of code changed in 2 files:

sbu062 2019-06-01 13:08 Rev.: 8376

switched to double precision with DGELS
- tested works

12 lines of code changed in 1 file:

May 2019 »

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