September 2016 Commit Log

Number of Commits:
236
Number of Active Developers:
5
sbu062 2016-09-30 14:10 Rev.: 1556

fix dimensionality parameters, collapsed into one at module start

7 lines of code changed in 1 file:

glj042 2016-09-30 13:54 Rev.: 1555

Graph code added - Gabbi

4 lines of code changed in 1 file:

glj042 2016-09-30 13:32 Rev.: 1554

395 lines of code changed in 1 file:

nzlcj 2016-09-30 09:45 Rev.: 1553

Changes together, made minor corrections in how energy stores are calculated in forwards simulation, for spawneverything.

8 lines of code changed in 1 file:

glj042 2016-09-30 08:23 Rev.: 1552

No changes - Gabbi

31 lines of code changed in 1 file:

sbu062 2016-09-30 07:57 Rev.: 1551

refactored type-bound distance func, added elemental dist3d, tested ok

39 lines of code changed in 1 file:

sbu062 2016-09-29 18:29 Rev.: 1550

minor comment fix

3 lines of code changed in 1 file:

sbu062 2016-09-29 14:51 Rev.: 1549

distance_average is hopefully ready, tested ok. added final comments on logics.

10 lines of code changed in 1 file:

sbu062 2016-09-29 13:36 Rev.: 1548

fix comments only

9 lines of code changed in 1 file:

sbu062 2016-09-29 12:58 Rev.: 1547

fix comments on max dimensionality for non-sampling in distance_average

12 lines of code changed in 1 file:

sbu062 2016-09-29 11:28 Rev.: 1546

adjusted distance_average for non-srandom-ampling with small arrays of objects

132 lines of code changed in 1 file:

sbu062 2016-09-29 08:45 Rev.: 1545

adopted for huge population sized in distance_average

28 lines of code changed in 1 file:

sbu062 2016-09-28 20:12 Rev.: 1544

added note on INTEL COMPILER BUG, intrinsic print function broken with object function output, works with assigned value to real

30 lines of code changed in 1 file:

sbu062 2016-09-28 19:08 Rev.: 1543

minor change, comment

3 lines of code changed in 1 file:

sbu062 2016-09-28 18:14 Rev.: 1542

deleted debug stopwatch object

0 lines of code changed in 1 file:

sbu062 2016-09-28 17:44 Rev.: 1541

fix comments only

4 lines of code changed in 1 file:

sbu062 2016-09-28 17:39 Rev.: 1540

distance_average hopefully ready

39 lines of code changed in 1 file:

sbu062 2016-09-28 15:49

fixed random nearest neighbours distance function

18 lines of code changed in 2 files:

sbu062 2016-09-28 15:31 Rev.: 1537

procedure for average distance between random spatial objects, debug code included, not final, bugs

115 lines of code changed in 1 file:

sbu062 2016-09-28 12:29 Rev.: 1536

body mass perception objects

1 lines of code changed in 1 file:

sbu062 2016-09-28 12:27 Rev.: 1535

addad body mass perception object

148 lines of code changed in 1 file:

sbu062 2016-09-28 11:51 Rev.: 1534

stomach capacity perception object with history stack, implemented functions

56 lines of code changed in 1 file:

sbu062 2016-09-28 11:25 Rev.: 1533

prototypes for stomach capacity perception object

53 lines of code changed in 1 file:

sbu062 2016-09-28 09:43 Rev.: 1532

added short implementation note for perception object

30 lines of code changed in 1 file:

sbu062 2016-09-28 09:18 Rev.: 1531

merged bullets

54 lines of code changed in 1 file:

sbu062 2016-09-28 09:17 Rev.: 1530

bullets in doc

46 lines of code changed in 1 file:

sbu062 2016-09-28 02:37 Rev.: 1529

debug code comments

11 lines of code changed in 1 file:

sbu062 2016-09-27 19:49 Rev.: 1528

fixed intent

1 lines of code changed in 1 file:

sbu062 2016-09-27 19:41 Rev.: 1527

fixed food perception object selection / visual range - dist_food_ranks deleted, bsolete remained but caused strange bugs with huge food object populations due to incorrect array mismatch (-999) in RANK_ARRAY, not needed. finally debugged the procedure now, probably:)

2 lines of code changed in 1 file:

sbu062 2016-09-27 13:25 Rev.: 1526

modify debug code only, food perception

14 lines of code changed in 1 file:

sbu062 2016-09-27 12:51 Rev.: 1525

more debug code for food perception objects

35 lines of code changed in 1 file:

sbu062 2016-09-27 12:11 Rev.: 1524

debug code for food perception objects

49 lines of code changed in 1 file:

sbu062 2016-09-27 11:49 Rev.: 1523

disabled debug code only

40 lines of code changed in 1 file:

sbu062 2016-09-27 11:20 Rev.: 1522

formalised other parameters of the two habitats

21 lines of code changed in 1 file:

sbu062 2016-09-27 10:44 Rev.: 1521

formalised the universe encompassing the habitats in GA

23 lines of code changed in 1 file:

sbu062 2016-09-27 09:21 Rev.: 1520

debug code for habitat, save csv data

52 lines of code changed in 1 file:

sbu062 2016-09-27 09:04 Rev.: 1519

frmalised habitat parameters in GA

12 lines of code changed in 1 file:

sbu062 2016-09-27 08:53 Rev.: 1518

minor addition: some tips and formatting

9 lines of code changed in 1 file:

sbu062 2016-09-26 20:20 Rev.: 1517

commets only fixed

0 lines of code changed in 1 file:

sbu062 2016-09-26 20:17 Rev.: 1516

directly setting SPATIAL parameters in vertor form uniform, avoid calling type-bound function. Still does not work with intel fortran: runtime stack overflow, still have to use loop plus acalar uniform form.

15 lines of code changed in 1 file:

sbu062 2016-09-26 19:23 Rev.: 1515

comments only, toto for intel stack overflow on habitat - environment uniform

3 lines of code changed in 1 file:

sbu062 2016-09-26 15:31 Rev.: 1514

disabled vector function uniform in food resources habitat build, use scalar and loop, vector function breaks in runtime on intel fortran with "stack overflow"

13 lines of code changed in 1 file:

sbu062 2016-09-26 14:36 Rev.: 1513

class-safe location of food items in habitat make, uniform still breaks in intel ifort!!

7 lines of code changed in 1 file:

sbu062 2016-09-26 13:49 Rev.: 1512

added habitat to GA loop procedure, debug code deleted

42 lines of code changed in 1 file:

sbu062 2016-09-26 12:03 Rev.: 1511

separate procedure to spread individuals at init randomly uniform distribution, seperated out from init method

44 lines of code changed in 1 file:

sbu062 2016-09-26 11:42 Rev.: 1510

class-safe functions for bounding environment in random population init procedure

4 lines of code changed in 1 file:

sbu062 2016-09-26 11:37 Rev.: 1509

updated comments only

7 lines of code changed in 1 file:

sbu062 2016-09-26 11:34 Rev.: 1508

implemented procs: build unlimited environment, get environment limits, init population bound by environment

72 lines of code changed in 1 file:

sbu062 2016-09-26 10:45 Rev.: 1507

deleted temporary spatial object, do function inline

1 lines of code changed in 1 file:

sbu062 2016-09-26 10:44 Rev.: 1506

implemented procedure to position member of population object in a uniform random position within an environment

22 lines of code changed in 1 file:

sbu062 2016-09-26 08:50 Rev.: 1505

use create method in individual genome init random and create zero, deleted older within-spatial-component code

4 lines of code changed in 1 file:

sbu062 2016-09-26 08:45 Rev.: 1504

comment only, very minor

2 lines of code changed in 1 file:

sbu062 2016-09-26 07:44 Rev.: 1503

create spatial object using create function in individual genome + enable debug code for habitat

17 lines of code changed in 1 file:

judyjinn 2016-09-24 00:46 Rev.: 1502

implemented starting weight dependent on mom's weight in SR diploideggs14 and also at the start of SRlifecycle

18 lines of code changed in 1 file:

judyjinn 2016-09-24 00:25 Rev.: 1501

finished adding new gene for controlling trigger of GOS 3, genomerlxexplor

104 lines of code changed in 2 files:

judyjinn 2016-09-23 21:29 Rev.: 1500

added relax/explore gene to commonsquirrel

30 lines of code changed in 1 file:

judyjinn 2016-09-23 21:19 Rev.: 1499

adding a gene for relax/explore in setupfile and in HED24

2 lines of code changed in 1 file:

judyjinn 2016-09-23 21:15 Rev.: 1498

no changes

15 lines of code changed in 1 file:

sbu062 2016-09-23 15:16 Rev.: 1497

create at different levels is not tolerated by ifort. create higher levels in class hierarchy changed to create_genome create_ind , debug code disabled altogether

106 lines of code changed in 1 file:

sbu062 2016-09-23 14:15 Rev.: 1496

debug code only, from the latest unsaved buffer, before reverting from ryan

4 lines of code changed in 1 file:

sbu062 2016-09-23 14:10 Rev.: 1495

reverting back my lovely files

7007 lines of code changed in 2 files:

sbu062 2016-09-23 13:45 Rev.: 1494

reverting back to my lovely versions

0 lines of code changed in 1 file:

rdi003 2016-09-23 13:37 Rev.: 1493

removing duplicate branch

0 lines of code changed in 1 file:

rdi003 2016-09-23 13:33 Rev.: 1492

working using static copy of sergey's hedg2 with split modules

47 lines of code changed in 2 files:

rdi003 2016-09-23 13:17 Rev.: 1490

0 lines of code changed in 1 file:

rdi003 2016-09-23 13:01 Rev.: 1489

moved modules to own source file for external use of its object file

7009 lines of code changed in 3 files:

sbu062 2016-09-23 12:50 Rev.: 1488

several fixes here and there, plus debug code for food perception, seems to work fast

82 lines of code changed in 1 file:

rdi003 2016-09-23 12:02 Rev.: 1487

added HEDTOOLSDIR to FFLAGS as mod file path search. and -c to HEDG2_04 compile to gen object file for external referencing

2 lines of code changed in 1 file:

rdi003 2016-09-23 09:44 Rev.: 1486

test template not compiling correctly

84 lines of code changed in 4 files:

sbu062 2016-09-23 09:39 Rev.: 1485

fix comments only

5 lines of code changed in 1 file:

sbu062 2016-09-23 09:35 Rev.: 1484

added cm2m conversion in food perception object calculations step 2.2.

4 lines of code changed in 1 file:

sbu062 2016-09-23 09:27 Rev.: 1483

fix intent

3 lines of code changed in 1 file:

sbu062 2016-09-23 04:42 Rev.: 1482

updated merge sync

3 lines of code changed in 1 file:

sbu062 2016-09-23 04:38 Rev.: 1481

properties update

3 lines of code changed in 1 file:

sbu062 2016-09-23 04:32 Rev.: 1480

fix comments only

13 lines of code changed in 2 files:

sbu062 2016-09-22 19:11 Rev.: 1479

micro fix latex formula

4 lines of code changed in 1 file:

sbu062 2016-09-22 19:05 Rev.: 1478

micro fix latex formula

1 lines of code changed in 1 file:

sbu062 2016-09-22 18:05 Rev.: 1477

fix rescale function plus latex formula

10 lines of code changed in 1 file:

sbu062 2016-09-22 17:07

minor fix comments only

8 lines of code changed in 2 files:

sbu062 2016-09-22 16:38 Rev.: 1474

rescale functions, from zero to one to arbitrary function, plus generic interface

36 lines of code changed in 1 file:

sbu062 2016-09-22 16:26 Rev.: 1473

implemented simple linear rescale function, elemental

27 lines of code changed in 1 file:

sbu062 2016-09-22 15:51 Rev.: 1472

debug log added

8 lines of code changed in 1 file:

sbu062 2016-09-22 14:42 Rev.: 1471

addad label to if for clarity

4 lines of code changed in 1 file:

sbu062 2016-09-22 14:39 Rev.: 1470

fixed make function for food perception object, added log output if non-conforming input arrays

8 lines of code changed in 1 file:

sbu062 2016-09-22 14:27 Rev.: 1469

food perception object procedure is now implemented, select perception food with the PERCEPT_FOOD container

17 lines of code changed in 1 file:

sbu062 2016-09-22 14:11 Rev.: 1468

implemented perception data fill (make method) for food perception object

35 lines of code changed in 1 file:

sbu062 2016-09-22 13:46 Rev.: 1467

renamed outer interface name make to init for food perception object, more logical, make will be used to fill it with data

3 lines of code changed in 1 file:

sbu062 2016-09-22 13:43 Rev.: 1466

main food perception function now outputs the food perception object rather than raw food items arrays

67 lines of code changed in 1 file:

sbu062 2016-09-22 12:54 Rev.: 1465

food perception object destructor

13 lines of code changed in 1 file:

sbu062 2016-09-22 12:43 Rev.: 1464

added perception object constructor (create method) for food

29 lines of code changed in 1 file:

sbu062 2016-09-22 12:19 Rev.: 1463

initial implementation of the food perception within visual range procedure, needs testing

36 lines of code changed in 1 file:

sbu062 2016-09-22 11:23 Rev.: 1462

added visual range vector form to the food items perception function + fix comments

46 lines of code changed in 1 file:

sbu062 2016-09-22 09:41 Rev.: 1461

small fix plus comments

13 lines of code changed in 1 file:

glj042 2016-09-22 09:29 Rev.: 1460

Gabbi - done some cleaning

11 lines of code changed in 1 file:

sbu062 2016-09-22 09:25 Rev.: 1459

added more details to the food perception function algorithm, added calculate circle area elemental function, pi parameter now global, plus updated some comments

85 lines of code changed in 1 file:

sbu062 2016-09-22 04:38 Rev.: 1458

small addition

13 lines of code changed in 1 file:

sbu062 2016-09-22 03:47 Rev.: 1457

merged latest changes from branch

3042 lines of code changed in 10 files:

sbu062 2016-09-22 03:44 Rev.: 1456

updated indices

7 lines of code changed in 1 file:

sbu062 2016-09-21 15:35 Rev.: 1455

another small fix

5 lines of code changed in 1 file:

sbu062 2016-09-21 15:28 Rev.: 1454

small fixes

4 lines of code changed in 1 file:

sbu062 2016-09-21 13:40 Rev.: 1453

added asciidoc details + make doc

39 lines of code changed in 1 file:

sbu062 2016-09-21 12:14 Rev.: 1452

added asciidoc to software requirements

12 lines of code changed in 1 file:

sbu062 2016-09-21 11:54 Rev.: 1451

depth for spatial objects (need it for visual range etc... in perception)

19 lines of code changed in 1 file:

sbu062 2016-09-21 11:40 Rev.: 1450

started implementation of perception objects, now for food. TODO: delete older perception prototypes, will be done differently

95 lines of code changed in 1 file:

glj042 2016-09-21 11:30 Rev.: 1449

Gabbi - script for single parameter value runs with plots

76 lines of code changed in 1 file:

sbu062 2016-09-21 09:22 Rev.: 1448

micro fix blanks only

7 lines of code changed in 1 file:

sbu062 2016-09-21 08:59 Rev.: 1447

fix code example for vector indexing procedure, check for invalid array memory reference

7 lines of code changed in 1 file:

sbu062 2016-09-21 08:39 Rev.: 1446

adjusted spatial_neighbours_distances proc for partial indexing that is much faster for small subarrays of objects.

27 lines of code changed in 1 file:

sbu062 2016-09-21 08:20 Rev.: 1445

added some trivial unit conversion functions + fixed SRGETR for tolerance never smaller than CPU epsilon

81 lines of code changed in 1 file:

nzlcj 2016-09-21 07:54 Rev.: 1444

Minor corrections together. Approved some edits suggested by Gabbi fixing errors in implementation of environmental sthochasticity.

9 lines of code changed in 1 file:

glj042 2016-09-21 06:46 Rev.: 1443

Gabbi - code for single parameter values with plots

131 lines of code changed in 1 file:

glj042 2016-09-20 14:44 Rev.: 1442

Gabbi - changes for runs of parameter sets

104 lines of code changed in 1 file:

glj042 2016-09-20 12:05 Rev.: 1441

Gabbi has solved a problem by herself! No longer negative spawnings. Plus some comments on potential modifications.

33 lines of code changed in 1 file:

sbu062 2016-09-19 14:30 Rev.: 1440

minor fix index

2 lines of code changed in 1 file:

sbu062 2016-09-19 13:13 Rev.: 1439

added partial indexing routines + generic interfaces

1642 lines of code changed in 2 files:

glj042 2016-09-19 12:49 Rev.: 1438

Comments and questions added by Gabbi

90 lines of code changed in 1 file:

nzlcj 2016-09-16 09:54 Rev.: 1437

First commmit of function for autocorrelated environment.

6 lines of code changed in 1 file:

nzlcj 2016-09-16 09:54 Rev.: 1436

Added environmental stochasticity together. Gabbi has to check for errors.

97 lines of code changed in 1 file:

nzlcj 2016-09-16 07:19 Rev.: 1435

Copied Gabbi's code from file sent on email. This is where the branch starts.

213 lines of code changed in 1 file:

nzlcj 2016-09-16 07:14 Rev.: 1434

Starting branch for adding environmental stochasticity

434 lines of code changed in 1 file:

sbu062 2016-09-15 18:14 Rev.: 1432

updated the individual class diagram - added population

131 lines of code changed in 2 files:

sbu062 2016-09-15 11:13 Rev.: 1431

added parameters for habitats and comments edited, @example tags

51 lines of code changed in 1 file:

sbu062 2016-09-14 17:42 Rev.: 1430

added comments on the implementation of the predator objects - simplistic, single type, no seperate container

8 lines of code changed in 1 file:

sbu062 2016-09-14 13:09 Rev.: 1429

debug code, habitat-bound random walk + csv output history for predator

15 lines of code changed in 1 file:

sbu062 2016-09-14 12:54 Rev.: 1428

made environmental limits in random and directional walks class rather than type

8 lines of code changed in 1 file:

sbu062 2016-09-14 12:37 Rev.: 1427

debug code, csv output of predators

13 lines of code changed in 1 file:

sbu062 2016-09-14 12:04 Rev.: 1426

debug code only, csv output of food resource

20 lines of code changed in 1 file:

sbu062 2016-09-14 11:39 Rev.: 1425

removed stopwatch from debug code for habitat, zero time to init

0 lines of code changed in 1 file:

sbu062 2016-09-14 11:37 Rev.: 1424

comment only

4 lines of code changed in 1 file:

sbu062 2016-09-14 11:32 Rev.: 1423

fix double allocation bug in habitat make function, plue debug code

13 lines of code changed in 1 file:

sbu062 2016-09-14 10:58 Rev.: 1422

in spatial_check_located_within_3d made habitat class

1 lines of code changed in 1 file:

sbu062 2016-09-14 10:39 Rev.: 1421

made the food resource in habitat make procedure

43 lines of code changed in 1 file:

sbu062 2016-09-14 09:34 Rev.: 1420

rename local predator location array only

12 lines of code changed in 1 file:

sbu062 2016-09-14 08:36 Rev.: 1419

minor comment

4 lines of code changed in 1 file:

sbu062 2016-09-14 08:28 Rev.: 1418

added generic functions to generate uniformly distributed spatial objects within an environment object, converted habitat init procedure for using these for making predators (refactor yesterday's suboptimal code), still finish making food resource for the habitat

82 lines of code changed in 1 file:

sbu062 2016-09-14 07:18 Rev.: 1417

note added on f95 Oracle non-support of OO code, f2003 non-compilant

16 lines of code changed in 1 file:

sbu062 2016-09-13 15:06 Rev.: 1416

started implementation of food resource in habitat object, need a subroutine to produce array of uniform spatial objects next and refactor predators too!

58 lines of code changed in 1 file:

sbu062 2016-09-13 14:16 Rev.: 1415

habitat make init procedure, predators. remain to do food resource

148 lines of code changed in 1 file:

sbu062 2016-09-13 12:27 Rev.: 1414

developed predator object, added init procedure

65 lines of code changed in 1 file:

sbu062 2016-09-13 11:41 Rev.: 1413

updated class diagram for habitat

8 lines of code changed in 2 files:

sbu062 2016-09-13 11:17 Rev.: 1412

added predation

17 lines of code changed in 2 files:

sbu062 2016-09-13 10:31 Rev.: 1411

updated class diagramc & schemes

1176 lines of code changed in 4 files:

sbu062 2016-09-13 10:24 Rev.: 1410

predator added plus prototype methods, + somim minor adjustments

75 lines of code changed in 1 file:

sbu062 2016-09-13 08:38 Rev.: 1409

merged, latest additions to doc, the environment module class diagram

1992 lines of code changed in 5 files:

sbu062 2016-09-13 08:25 Rev.: 1408

updated class diagrams, added the environment module

1992 lines of code changed in 5 files:

sbu062 2016-09-13 01:58 Rev.: 1407

merged latest, update class diagram for individual

2633 lines of code changed in 5 files:

sbu062 2016-09-13 01:55 Rev.: 1406

update class diagram for individual

422 lines of code changed in 2 files:

sbu062 2016-09-13 01:13 Rev.: 1405

minor, comment only

4 lines of code changed in 1 file:

sbu062 2016-09-13 00:49 Rev.: 1404

debug code only

30 lines of code changed in 1 file:

sbu062 2016-09-12 15:31 Rev.: 1403

debug code only, random walk

47 lines of code changed in 1 file:

sbu062 2016-09-12 14:06 Rev.: 1402

debug code only, random walk in GA

5 lines of code changed in 1 file:

sbu062 2016-09-12 13:59 Rev.: 1401

debug code only

40 lines of code changed in 1 file:

sbu062 2016-09-12 13:04 Rev.: 1400

minor fix for svn merge doc

5 lines of code changed in 1 file:

sbu062 2016-09-12 12:58 Rev.: 1399

updated class hierarchy scheme, changed fig sizes a little

2521 lines of code changed in 3 files:

sbu062 2016-09-12 12:36 Rev.: 1398

SPATIAL_MOVING now start object class hierarchy for the individual genome, adapted create funcs

70 lines of code changed in 1 file:

sbu062 2016-09-11 10:38 Rev.: 1397

minor add to coding style description (methods naming)

5 lines of code changed in 1 file:

sbu062 2016-09-11 10:19 Rev.: 1396

merged IDRANK renamed to ARRAY_INDEX

10 lines of code changed in 2 files:

sbu062 2016-09-11 10:15

IDRANK renamed to ARRAY_INDEX

13 lines of code changed in 3 files:

sbu062 2016-09-11 09:00 Rev.: 1393

merged, footnote only

5 lines of code changed in 1 file:

sbu062 2016-09-11 08:59 Rev.: 1392

footnote added on indexx

5 lines of code changed in 1 file:

sbu062 2016-09-11 08:40 Rev.: 1391

reorder only

1 lines of code changed in 1 file:

sbu062 2016-09-11 08:38 Rev.: 1390

fix food item create, we needn't set default size

4 lines of code changed in 1 file:

sbu062 2016-09-11 08:03 Rev.: 1389

create method for all higher order spatial objects

47 lines of code changed in 1 file:

sbu062 2016-09-11 06:54 Rev.: 1388

forgot error_flag

2 lines of code changed in 1 file:

sbu062 2016-09-10 23:34 Rev.: 1387

converted food item to extension of spatial

35 lines of code changed in 1 file:

sbu062 2016-09-10 22:43 Rev.: 1386

added explicit intent in to some spatial utils

11 lines of code changed in 1 file:

sbu062 2016-09-10 22:31 Rev.: 1385

fix distance sub, real, + minor fixes , intent and made elemental functions for scalar coordinates

37 lines of code changed in 1 file:

sbu062 2016-09-10 21:44 Rev.: 1384

return location name

4 lines of code changed in 1 file:

sbu062 2016-09-10 21:39 Rev.: 1383

return to type for spatial_nearest + minor fix

9 lines of code changed in 1 file:

sbu062 2016-09-10 20:32 Rev.: 1382

spatial neighbours procedure ready, get distances and vector sort and rank indices

90 lines of code changed in 1 file:

sbu062 2016-09-10 18:26 Rev.: 1381

merged latest changes from budaev, vector indexing utilities

955 lines of code changed in 3 files:

sbu062 2016-09-10 18:23 Rev.: 1380

fixed vector indexing routines

63 lines of code changed in 2 files:

sbu062 2016-09-10 16:47 Rev.: 1379

small fix

10 lines of code changed in 2 files:

sbu062 2016-09-10 11:24 Rev.: 1378

added array ranking subs with generic interface, performance optimised versions

663 lines of code changed in 2 files:

sbu062 2016-09-10 09:13 Rev.: 1377

type neighbours now class in spatial_get_nearest_object, allow any spatial object extension

4 lines of code changed in 1 file:

sbu062 2016-09-10 09:04 Rev.: 1376

added pure to procs contained in procs (sorting )

6 lines of code changed in 1 file:

sbu062 2016-09-10 08:50 Rev.: 1375

spatial_neighbours_sort_by_distance moved at the end of module as breaks geany panel symbol list

110 lines of code changed in 1 file:

sbu062 2016-09-09 19:38 Rev.: 1374

neighbours sort refactor - make use of object-bound functions now

21 lines of code changed in 1 file:

sbu062 2016-09-09 18:13 Rev.: 1373

formatting only

56 lines of code changed in 1 file:

sbu062 2016-09-09 18:05 Rev.: 1372

sorting func for spatial object, type target

59 lines of code changed in 1 file:

sbu062 2016-09-09 15:49 Rev.: 1371

refactoring sort function for nearest neighbours

18 lines of code changed in 1 file:

sbu062 2016-09-09 15:36 Rev.: 1370

nitial implementation of sort function for spatial objects by distance from a specific spatial object

101 lines of code changed in 1 file:

sbu062 2016-09-09 14:37 Rev.: 1369

implemented additional nearesr neighbour function for spatial object that returns id number

63 lines of code changed in 1 file:

sbu062 2016-09-09 14:20 Rev.: 1368

fix name for nearest neighbour function

3 lines of code changed in 1 file:

sbu062 2016-09-09 14:18 Rev.: 1367

nearest neighbour function for spatial objects

84 lines of code changed in 1 file:

sbu062 2016-09-09 12:22 Rev.: 1366

implemented function to calculate coordinate shifts from true distance between points for Gaussian random walk in any dimensionality

36 lines of code changed in 1 file:

sbu062 2016-09-09 11:44 Rev.: 1365

refactored distance type bound procs, now use the generic distance engine

13 lines of code changed in 1 file:

sbu062 2016-09-09 11:17 Rev.: 1364

low-level functions for distances, + generic interfaces for array or scalar

55 lines of code changed in 1 file:

sbu062 2016-09-09 08:30 Rev.: 1363

copy the second file

18 lines of code changed in 1 file:

sbu062 2016-09-09 08:29 Rev.: 1362

copy gabbi files 1

434 lines of code changed in 1 file:

sbu062 2016-09-09 08:26 Rev.: 1361

delete unneded folder

0 lines of code changed in 1 file:

sbu062 2016-09-09 02:41 Rev.: 1360

disabled debug block as intel ifort (13) doesn't support it

3 lines of code changed in 1 file:

sbu062 2016-09-09 02:23 Rev.: 1359

reformatted debug code at start of GA as block (f 2008 standard compilance required)

28 lines of code changed in 1 file:

sbu062 2016-09-08 17:53 Rev.: 1358

minor, fix comment

1 lines of code changed in 1 file:

sbu062 2016-09-08 16:01 Rev.: 1357

updated fixed comments on spatial_moving_self_distance_3d + debug code

13 lines of code changed in 1 file:

sbu062 2016-09-08 15:32 Rev.: 1356

debug code only changes

1 lines of code changed in 1 file:

sbu062 2016-09-08 15:29 Rev.: 1355

fixed spatial_moving_self_distance_3d backward calc for distance traversed from history stack

19 lines of code changed in 1 file:

sbu062 2016-09-08 12:48 Rev.: 1354

removed the deprecated simple deterministic random walk

0 lines of code changed in 1 file:

sbu062 2016-09-08 12:45 Rev.: 1353

fix comments doc

8 lines of code changed in 1 file:

sbu062 2016-09-08 12:38 Rev.: 1352

fixed comments

15 lines of code changed in 1 file:

sbu062 2016-09-08 12:23 Rev.: 1351

implemented directional gaussian random walk in 2.5 dim, x y plus separate depth parameters for component gaussian shifts

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sbu062 2016-09-08 11:59 Rev.: 1350

renamed dirwalk shorter

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sbu062 2016-09-08 11:56 Rev.: 1349

fixed gaussian directional random walk + tested

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sbu062 2016-09-08 11:34 Rev.: 1348

implemented targeted directional gaussian random walk in 3d

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sbu062 2016-09-07 16:07 Rev.: 1347

minor fix debug code

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sbu062 2016-09-07 14:57 Rev.: 1346

left gaussian random walk in 3D debug code so far, need more testing

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sbu062 2016-09-07 12:28 Rev.: 1345

block labels code style

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sbu062 2016-09-07 11:25 Rev.: 1344

implemented gaussian random walk in 2.5 dimensions: xy as 2D and depth as separate parameters

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sbu062 2016-09-07 10:36 Rev.: 1343

initial implementation of simple random walk (not needed any more probably) and an optionally environment-restricted Gaussian random walk for spatial objects

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glj042 2016-09-07 08:28 Rev.: 1342

Added figure commands - Gabbi

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glj042 2016-09-07 07:50 Rev.: 1341

Modified plot statements bu Gabbi

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sbu062 2016-09-02 19:29 Rev.: 1340

micro-fix

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sbu062 2016-09-02 19:20 Rev.: 1339

more fix latex formula in comment to cv2variance

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sbu062 2016-09-02 19:12 Rev.: 1338

fix latex formula in comment to cv2variance

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sbu062 2016-09-02 18:58 Rev.: 1337

minor fix, proc name change only

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sbu062 2016-09-02 18:54 Rev.: 1336

moved centre_coordinates to environmaent object from habitat, small comments changes

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sbu062 2016-09-02 18:19 Rev.: 1335

reverse gamma2gene converted to elemental

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sbu062 2016-09-02 14:56 Rev.: 1334

minor fix comments

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sbu062 2016-09-02 14:54 Rev.: 1333

check function for is within the environment, +comments here and there

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sbu062 2016-09-02 14:14 Rev.: 1332

minor addition to coding style notes on top

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sbu062 2016-09-02 13:53 Rev.: 1331

minor changes

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sbu062 2016-09-02 13:47 Rev.: 1330

small changes, comments on spatial object interfaces position vs. location

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sbu062 2016-09-02 13:35 Rev.: 1329

made consistent names for interfaces fo spatial objects, position is to set, locate to get

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sbu062 2016-09-02 12:58 Rev.: 1328

cv2variance get_size locate for food item and food resource + fix gaussian stomach content mass variance (lacked*init value)

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sbu062 2016-09-02 11:05 Rev.: 1327

delete debug code from GA

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sbu062 2016-09-02 11:04 Rev.: 1326

food resource create constructor now sets default food item size if not providedby constructor func (was MISSING)

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sbu062 2016-09-02 10:57 Rev.: 1325

fix food item size whan create, + left debug code from GA−EVOLVE

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sbu062 2016-09-02 09:43 Rev.: 1324

fix constructor for food resource object, allocate array!

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sbu062 2016-09-02 09:34 Rev.: 1323

real type sort function for food items within a food resource object

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sbu062 2016-09-01 19:53 Rev.: 1322

added busybox win32 lins to software

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sbu062 2016-09-01 15:37 Rev.: 1321

minor changes, coments only (coding style at top)

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sbu062 2016-09-01 14:56 Rev.: 1320

minor changes, comments beautify only

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sbu062 2016-09-01 14:51 Rev.: 1319

made spatial make missing procedure, the condition - did all get-functions, fixed stomach_content_mass_emptify_step non-reducing

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glj042 2016-09-01 14:45 Rev.: 1318

Added some graphs - Gabbi

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nzlcj 2016-09-01 11:13 Rev.: 1317

Creating folder for new branch. Aim is to make bioenergetic parameters more system- and species-specific.

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glj042 2016-09-01 09:44 Rev.: 1316

no changes

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August 2016 »

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