April 2019 Commit Log

Number of Commits:
128
Number of Active Developers:
4
sbu062 2019-04-30 23:29 Rev.: 8220

base model r8207, **old deteriorate** condition
- `svn merge -r HEAD:8207 .`

9 lines of code changed in 4 files:

sbu062 2019-04-30 23:27 Rev.: 8219

run G0E: GOS-linked, no attention restriction, extreme predation, N 1000
- `svn merge -r HEAD:8216 .`

3 lines of code changed in 2 files:

sbu062 2019-04-30 23:20 Rev.: 8218

run P0E: Full predictive, no attention restriction, extreme predation, N1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 23:12 Rev.: 8217

run P1E: Full predictive, full attention, extreme predation, N=1000
- `svn merge -r HEAD:8211 .`
- **relax deteriorate condition** to allow N=1 alive

3 lines of code changed in 2 files:

sbu062 2019-04-30 22:51 Rev.: 8216

run G1E: GOS-linked, full attention, extreme predation, N 1000
- `svn merge -r HEAD:8212 .`
- **relax deteriorate condition** to allow N=1 alive

6 lines of code changed in 3 files:

sbu062 2019-04-30 15:03 Rev.: 8215

base model r8207
- `svn merge -r HEAD:8207 .`

4 lines of code changed in 2 files:

cje012 2019-04-30 15:02 Rev.: 8214

Added new function for saving to binary files.

20 lines of code changed in 1 file:

cje012 2019-04-30 15:01 Rev.: 8213

Work in progress

152 lines of code changed in 1 file:

sbu062 2019-04-30 15:01 Rev.: 8212

run G1E: GOS-linked, full attention, extreme predation, N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 15:00 Rev.: 8211

run P1E: Full predictive, full attention, extreme predation, N=1000

6 lines of code changed in 2 files:

sbu062 2019-04-30 14:58 Rev.: 8210

run P0H: Full predictive, no attention restriction, high predation, N1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 14:57 Rev.: 8209

run G0H: GOS-linked, no attention restriction, high predation, N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 14:54 Rev.: 8208

run G1H: GOS-linked, full attention, high predation, N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 14:47 Rev.: 8207

run P1H: Full predictive, full attention, high predation, N 1000

1 lines of code changed in 1 file:

sbu062 2019-04-30 14:39 Rev.: 8206

fixed bug in fitness: (fitness_energy_reprfact)

7 lines of code changed in 1 file:

sbu062 2019-04-30 12:46 Rev.: 8205

base model r8199
- `svn merge -r HEAD:8199 .`

4 lines of code changed in 2 files:

sbu062 2019-04-30 12:45 Rev.: 8204

G1E: GOS-linked, full attention, extreme predation, large N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 12:41 Rev.: 8203

run P1E: Full predictive, full attention, extreme predation, N=1000

6 lines of code changed in 2 files:

sbu062 2019-04-30 12:37 Rev.: 8202

run P0H: Full predictive, no attention restriction, high predation, N1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 12:30 Rev.: 8201

run G0H: GOS-linked, no attention restriction, high predation, N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 12:25 Rev.: 8200

run G1H: GOS-linked, full attention, high predation, N 1000

3 lines of code changed in 2 files:

sbu062 2019-04-30 12:19 Rev.: 8199

run P1H: Full predictive, full attention, high predation, N 1000

1 lines of code changed in 1 file:

sbu062 2019-04-30 12:15 Rev.: 8198

base model modified parameters
- fitness based on energy and reproductive factor
- small population 1000
- minuscle variability of birth stomach
- fix real(SRP) in fitness functions parameters

45 lines of code changed in 2 files:

sbu062 2019-04-29 21:23 Rev.: 8197

basic state is r8188 (`svn merge -r HEAD:8188 .`)

4 lines of code changed in 2 files:

sbu062 2019-04-29 21:14 Rev.: 8196

run G1E: GOS-linked, full attention, extreme predation, large N 10000
- `svn merge -r HEAD:8189 .`
- change predation

3 lines of code changed in 2 files:

sbu062 2019-04-29 21:01 Rev.: 8195

run P1E: Full predictive, full attention, extreme predation, large N=10000
- fixed model name and tags ln 1943, was wrong in r8194

2 lines of code changed in 1 file:

sbu062 2019-04-29 20:05 Rev.: 8194

run P1E: Full predictive, full attention, extreme predation, large N=10000

1 lines of code changed in 1 file:

sbu062 2019-04-29 09:16 Rev.: 8193

basic state is r8188

1 lines of code changed in 1 file:

sbu062 2019-04-29 08:49 Rev.: 8192

return to base state r8187

5 lines of code changed in 2 files:

sbu062 2019-04-29 08:47 Rev.: 8191

run P0H: Full predictive, no attention restriction, high predation, fitness fixed
- applied patch r8184 (hg96) and 8186

3 lines of code changed in 2 files:

sbu062 2019-04-29 08:46 Rev.: 8190

run G0H: GOS-linked, no attention restriction, high predation, large N=10000, fitness fixed
- applied patch r8184 (hg96) and 8186

3 lines of code changed in 2 files:

sbu062 2019-04-29 08:44 Rev.: 8189

run G1H: GOS-linked, full attention, high predation, large N 10000, fitness fixed
- applied patch r8184 (hg96) and 8186

3 lines of code changed in 2 files:

sbu062 2019-04-29 08:41 Rev.: 8188

run P1H: Full predictive, full attention, high predation, large N 10000, fitness fixed
- applied patch r8184 (hg96) and 8186

1 lines of code changed in 1 file:

sbu062 2019-04-29 08:39 Rev.: 8187

run P1H: Full predictive, full attention, high predation, large N 10000 (fitness fixed)

1 lines of code changed in 1 file:

sbu062 2019-04-29 08:13 Rev.: 8186

even better fix for fitness overflow, r8183

2 lines of code changed in 1 file:

sbu062 2019-04-29 08:13 Rev.: 8185

enable background compression

1 lines of code changed in 1 file:

sbu062 2019-04-29 08:13 Rev.: 8184

better avoid fitness overflow, patch `hg96`

1 lines of code changed in 1 file:

sbu062 2019-04-29 06:54 Rev.: 8183

check for fitness overflow, patch `hg95`

1 lines of code changed in 1 file:

sbu062 2019-04-28 10:23 Rev.: 8182

disable background compression of output files
{{{
# HG changeset patch
# User Sergey Budaev <sergey.budaev@uib.no>
# Date 1556445013 -7200
# Sun Apr 28 11:50:13 2019 +0200
# Node ID 90a5a9ce1ec8fc47a0d4b1c127157d9657668fde
# Parent 5ced71f00bdc9a450e9bd45e6f830defa878166f
disable background compression of ooutput files

diff -r 5ced71f00bdc -r 90a5a9ce1ec8 m_common.f90
--- a/m_common.f90 Sat Apr 27 11:27:13 2019 +0000
+++ b/m_common.f90 Sun Apr 28 11:50:13 2019 +0200
@@ -2016,7 +2016,7 @@
!> This parameter defines if the output files are compressed in the
!! background in the parallel mode or the program should wait for
!! termination of the child zipping process.
- logical, parameter, public :: ZIP_OUTPUTS_BACKGROUND=.TRUE.
+ logical, parameter, public :: ZIP_OUTPUTS_BACKGROUND=.FALSE.

!> This parameter defines the compression program that is executed to "zip"
!! the data files if commondata::is_zip_outputs is enabled (TRUE).
}}}

1 lines of code changed in 1 file:

sbu062 2019-04-27 11:27 Rev.: 8181

back to standard model r8177 (**P1H**)
- `svn merge -r HEAD:8177 .`

5 lines of code changed in 2 files:

sbu062 2019-04-27 11:24 Rev.: 8180

run P0H: Full predictive, no attention restriction, high predation

3 lines of code changed in 2 files:

sbu062 2019-04-27 11:19 Rev.: 8179

run G0H: GOS-linked, no attention restriction, high predation, large N=10000

3 lines of code changed in 2 files:

sbu062 2019-04-27 11:13 Rev.: 8178

run G1H: GOS-linked, full attention, high predation, large N 10000

3 lines of code changed in 2 files:

sbu062 2019-04-27 11:05 Rev.: 8177

run P1H: Full predictive, full attention, high predation, large N 10000

5 lines of code changed in 1 file:

cje012 2019-04-26 16:56 Rev.: 8176

Work in progress

24 lines of code changed in 1 file:

cje012 2019-04-26 16:46 Rev.: 8175

Work in progress

110 lines of code changed in 1 file:

cje012 2019-04-26 16:46 Rev.: 8174

Added a
function for importing experiment data.

23 lines of code changed in 1 file:

cje012 2019-04-26 15:55

Fixed bug that caused negative survival if starvation limit was turned on.

2 lines of code changed in 2 files:

cje012 2019-04-26 15:53

Fixed bug

2 lines of code changed in 2 files:

cje012 2019-04-26 15:49

Fixed bug that caused negative survival if starvation limit was turned on.

4 lines of code changed in 2 files:

cje012 2019-04-26 08:59 Rev.: 8167

Minor updated to plots.

6 lines of code changed in 1 file:

sbu062 2019-04-25 11:21 Rev.: 8166

run: fully predictive behaviour

1 lines of code changed in 1 file:

sbu062 2019-04-25 11:13 Rev.: 8165

run: small popsize 1000

1 lines of code changed in 1 file:

sbu062 2019-04-25 11:08 Rev.: 8164

run: fixed from GOS, fixed steps 448

3 lines of code changed in 1 file:

cje012 2019-04-25 08:36 Rev.: 8163

Minor change to axis title.

1 lines of code changed in 1 file:

cje012 2019-04-25 08:28 Rev.: 8162

Minor changes to axis titles.

2 lines of code changed in 1 file:

sbu062 2019-04-24 11:01 Rev.: 8161

typo fixed

1 lines of code changed in 1 file:

sbu062 2019-04-24 11:00 Rev.: 8160

added inline test for strings

3 lines of code changed in 1 file:

sbu062 2019-04-24 10:56 Rev.: 8159

completed tests for strings module

63 lines of code changed in 1 file:

sbu062 2019-04-24 09:42 Rev.: 8158

more tests for strings module

53 lines of code changed in 1 file:

cje012 2019-04-23 14:40 Rev.: 8157

Minor change

2 lines of code changed in 1 file:

cje012 2019-04-23 14:30 Rev.: 8156

Changed environmental values to fit the new ValueOfE scale.

2 lines of code changed in 1 file:

cje012 2019-04-23 13:41

Fixed error in makefile

31 lines of code changed in 2 files:

cje012 2019-04-23 13:15 Rev.: 8153

Added propset to the file

2 lines of code changed in 1 file:

cje012 2019-04-23 13:12 Rev.: 8152

Version of the model to run experiments by forcing indivduals through preset environmens.

699 lines of code changed in 1 file:

cje012 2019-04-23 13:10 Rev.: 8151

Updated to reflect changes in the other versions of the model

23 lines of code changed in 1 file:

cje012 2019-04-23 13:07 Rev.: 8150

Removed all -f as they caused problems for windows.

2 lines of code changed in 1 file:

cje012 2019-04-23 12:52 Rev.: 8149

Updated makefile to also be able to compile Hormones_v2_forced.f90, just write make ex.

22 lines of code changed in 1 file:

cje012 2019-04-23 12:51 Rev.: 8148

Added proset to file

2 lines of code changed in 1 file:

cje012 2019-04-23 12:51 Rev.: 8147

Version of the model for doing experiments and forcing individuals through choosen environments.

675 lines of code changed in 1 file:

sbu062 2019-04-23 12:17 Rev.: 8146

FEE v.3.6.8, incorporated comments to reviewers (responses) in FEE review forum to the manuscript
- some words deleted throughout the paper to keep within 12000 limit

97 lines of code changed in 2 files:

cje012 2019-04-23 12:13 Rev.: 8145

Changed file locations, fixed some errors and changed VE.limits

29 lines of code changed in 1 file:

cje012 2019-04-23 12:12 Rev.: 8144

Minor change

29 lines of code changed in 1 file:

lhi088 2019-04-23 11:10 Rev.: 8143

added male fertility in exponential relationship to resources

65 lines of code changed in 1 file:

cje012 2019-04-23 08:48 Rev.: 8142

Changes to locations for files and some updates to plots.

21 lines of code changed in 1 file:

cje012 2019-04-23 06:45 Rev.: 8141

Minor change

2 lines of code changed in 1 file:

sbu062 2019-04-18 11:54 Rev.: 8140

more tests for strings

62 lines of code changed in 1 file:

sbu062 2019-04-18 09:53 Rev.: 8139

test parse

0 lines of code changed in 2 files:

sbu062 2019-04-18 08:20 Rev.: 8138

tool: show all procs

2 lines of code changed in 1 file:

cje012 2019-04-15 13:53 Rev.: 8137

Fixed error where initial R_cat was saved incorrecly to the ind.array.

5 lines of code changed in 1 file:

cje012 2019-04-15 13:53 Rev.: 8136

Minor but important fix

1 lines of code changed in 1 file:

cje012 2019-04-15 13:47 Rev.: 8135

Fixed error where initial R_cat was saved incorrecly to the ind.array.

5 lines of code changed in 1 file:

cje012 2019-04-15 13:39 Rev.: 8134

Fixed error where initial R_cat was saved incorrecly to the ind.array.

5 lines of code changed in 1 file:

cje012 2019-04-15 11:36 Rev.: 8133

Updated R_categories_init.

1 lines of code changed in 1 file:

cje012 2019-04-15 11:09 Rev.: 8132

Updated how R_cat and reserves are saved to the ind-matrix.

2 lines of code changed in 1 file:

cje012 2019-04-15 09:21 Rev.: 8131

Added Figure F which is just showing our theory regarding parasite manipulation.

84 lines of code changed in 1 file:

cje012 2019-04-15 08:44 Rev.: 8130

Updated to new parameters.

2 lines of code changed in 1 file:

cje012 2019-04-15 08:41 Rev.: 8129

Uncommented starvation limit in code, remember to set the starvation parameter to -1000 to not have it in use.

4 lines of code changed in 1 file:

cje012 2019-04-15 08:39 Rev.: 8128

Updated to new parameters.

17 lines of code changed in 1 file:

cje012 2019-04-15 08:34

Updated to new parameters.

0 lines of code changed in 2 files:

cje012 2019-04-15 08:20 Rev.: 8125

Updated to new parameterset.

25 lines of code changed in 1 file:

cje012 2019-04-15 07:56 Rev.: 8124

Updated to new parameterset.

9 lines of code changed in 1 file:

sbu062 2019-04-14 10:03 Rev.: 8123

(population_load_data_all_genomes): implemented procedure to load genome data
- merged after further testing r8121 from 06
- merged from feature branch as in r8119

1930 lines of code changed in 6 files:

sbu062 2019-04-13 08:19 Rev.: 8122

development branch deleted
- HEDG2_06-read-genome branch for (population_load_data_all_genomes)

0 lines of code changed in 2 files:

sbu062 2019-04-13 08:17 Rev.: 8121

(population_load_data_all_genomes): implemented procedure to load genome data
- merged from feature branch as in r8119

386 lines of code changed in 1 file:

sbu062 2019-04-13 08:08 Rev.: 8120

delete debug code

0 lines of code changed in 1 file:

sbu062 2019-04-13 08:02 Rev.: 8119

(population_load_data_all_genomes): debugging, small fixes, error checking short lines

40 lines of code changed in 2 files:

sbu062 2019-04-12 21:50 Rev.: 8118

(population_load_data_all_genomes): debugging, other files, abridged subdata auto-initialised random

14 lines of code changed in 2 files:

sbu062 2019-04-12 21:24 Rev.: 8117

(population_load_data_all_genomes): debugging

53 lines of code changed in 2 files:

sbu062 2019-04-12 19:51 Rev.: 8116

(population_load_data_all_genomes): debugging

62 lines of code changed in 2 files:

sbu062 2019-04-12 13:48 Rev.: 8115

(population_load_data_all_genomes): debugging

26 lines of code changed in 3 files:

sbu062 2019-04-12 13:08 Rev.: 8114

(population_load_data_all_genomes): public interface

3 lines of code changed in 1 file:

sbu062 2019-04-12 12:48 Rev.: 8113

(population_load_data_all_genomes): continue implementing

21 lines of code changed in 1 file:

sbu062 2019-04-12 12:30 Rev.: 8112

(population_load_data_all_genomes): continue implementing

0 lines of code changed in 2 files:

sbu062 2019-04-12 10:33 Rev.: 8111

run: GOS-linked behaviour selection

1 lines of code changed in 1 file:

sbu062 2019-04-12 10:28 Rev.: 8110

run: big population 10000, reproduction threshold reduced 1.0

2 lines of code changed in 1 file:

sbu062 2019-04-12 10:22 Rev.: 8109

separate feature branch for genome read procedure, return main to r8090
- HEDG2_06-read-genome - new feature branch for genome
read (population_load_data_all_genomes)
- `svn merge -r HEAD:8090 .`

0 lines of code changed in 1 file:

sbu062 2019-04-12 07:53 Rev.: 8108

adapted makefiles for tests within main hedtools

9 lines of code changed in 2 files:

sbu062 2019-04-12 07:51 Rev.: 8107

move hedtools tests to main branch

620 lines of code changed in 3 files:

sbu062 2019-04-12 07:41 Rev.: 8106

hedtools tests more visual

10 lines of code changed in 2 files:

cje012 2019-04-10 08:27 Rev.: 8105

- Changed order of plots in Figure A
- Added points to the line for Figure B c) and d) to make them easier to distinguish from the line for virulence level 0.5 when they are printed in greyscale
- Removed reserves from Figure C as it could be difficult understand

16 lines of code changed in 1 file:

lhi088 2019-04-07 18:51 Rev.: 8104

changed parameters and inserted the function to export my data to R to make graphs

61 lines of code changed in 1 file:

sbu062 2019-04-05 09:38 Rev.: 8103

FEE v.3.6.7, adapt comments after r2 (r8069)
- r1
- r2

221 lines of code changed in 2 files:

sbu062 2019-04-03 14:17 Rev.: 8102

(population_load_data_all_genomes): started implementing procedure to load genome data
code builds but incomplete

197 lines of code changed in 1 file:

sbu062 2019-04-03 10:51 Rev.: 8101

returned to normal predictive as in r8090
`svn merge -r HEAD:8090 .`

3 lines of code changed in 1 file:

sbu062 2019-04-03 10:45 Rev.: 8100

added sensible message based on error code from microsoft docs

12 lines of code changed in 1 file:

sbu062 2019-04-03 09:10 Rev.: 8099

run: disabled attention restriction, predictive full

1 lines of code changed in 1 file:

jwe041 2019-04-03 08:53 Rev.: 8098

Updated with current parameters.f90

0 lines of code changed in 2 files:

jwe041 2019-04-03 08:52 Rev.: 8097

Updated with new parameters

0 lines of code changed in 2 files:

jwe041 2019-04-03 08:48 Rev.: 8096

Changed M_O2 equation from being exponential to linear

0 lines of code changed in 2 files:

sbu062 2019-04-02 15:27 Rev.: 8094

returned to predictive as in r8090
`svn merge -r HEAD:8090 .`

4 lines of code changed in 2 files:

cje012 2019-04-02 14:19 Rev.: 8093

Minor changes

37 lines of code changed in 1 file:

sbu062 2019-04-02 14:18 Rev.: 8092

run: disable attention weighting

2 lines of code changed in 1 file:

sbu062 2019-04-02 12:11 Rev.: 8091

GOS-linked behaviour

1 lines of code changed in 1 file:

sbu062 2019-04-02 12:06 Rev.: 8090

return to high food as in r7884

2 lines of code changed in 1 file:

sbu062 2019-04-01 21:09 Rev.: 8089

exclude pattern temporary files

1 lines of code changed in 1 file:

sbu062 2019-04-01 20:38 Rev.: 8088

use environ vars for paths
Note that Windows doesn't normally allow joining vars
e.g. `%FPATH%%LOGFIL%`, use full path in both vars

5 lines of code changed in 1 file:

sbu062 2019-04-01 13:31 Rev.: 8087

save log operation into log file

4 lines of code changed in 1 file:

March 2019 »

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