fix doxygen
4 lines of code changed in 1 file:
small fix doxygen comments
3 lines of code changed in 1 file:
in (reproduction_mass_offspring_calc) deleted mult_factor parameter
2 lines of code changed in 1 file:
small fix
5 lines of code changed in 1 file:
fix comments in (reproduction_cost_energy_dynamic)
15 lines of code changed in 1 file:
add commends
28 lines of code changed in 1 file:
procedure (reproduction_cost_energy_dynamic) implements dynamic cost that is different in males and females and depend on the combined offspring mass and agent's mass
77 lines of code changed in 1 file:
added arbitrary multiplier in (reproduction_mass_offspring_calc)
21 lines of code changed in 1 file:
small change comments
3 lines of code changed in 1 file:
small fixes
2 lines of code changed in 1 file:
isolated calculation of the overall offspring mass into (reproduction_mass_offspring_calc) function
43 lines of code changed in 1 file:
renamed (reproduction_n_offspring_)
3 lines of code changed in 1 file:
moved (n_offspring_reproduction) out of (reproduction_n_increment), into separate (reproduction_n_offspring_reprod) function, type bound to REPRODUCTION class
77 lines of code changed in 1 file:
(maximum_n_reproductions) skeleton implementation, need testosterone in conspecific perception
14 lines of code changed in 1 file:
started implementing (maximum_n_reproductions) based on relative testosterone level, need to add testosterone to conspecific perception first
36 lines of code changed in 1 file:
fix increment n offspring in (reproduction_n_increment); started implementing (maximum_n_reproductions) for multiple fertilisation per event
36 lines of code changed in 1 file:
fixed optional is_reproduce in (reproduce_do_this); invoke (reproductions_increment), added sub-procedure (reproduction_unsuccessful_cost)
59 lines of code changed in 1 file:
another comment addition
4 lines of code changed in 1 file:
test didn't work with length2mass()
1 lines of code changed in 1 file:
test doxygen function start from ::
1 lines of code changed in 1 file:
another fix comments
9 lines of code changed in 1 file:
fix note
5 lines of code changed in 1 file:
small changes
2 lines of code changed in 1 file:
small note
5 lines of code changed in 1 file:
fix note
7 lines of code changed in 1 file:
small fix note
4 lines of code changed in 1 file:
add small note
5 lines of code changed in 1 file:
add reproduction success indicators into (population_save_data_all_agents_csv)
7 lines of code changed in 1 file:
renames, shorter
8 lines of code changed in 1 file:
minor changes
8 lines of code changed in 1 file:
fix: multiply by n of reproductions
4 lines of code changed in 1 file:
in (reproduction_n_reproductions_increment) invoke (n_offspring_reproduction_fix) to calculate number of offspring
23 lines of code changed in 1 file:
doxygen include refs to public parameters from commondata
3 lines of code changed in 1 file:
test inclusion doxygen parameters from commondata, need style
4 lines of code changed in 1 file:
small changes, use floor for number of offspring from ratio
7 lines of code changed in 1 file:
small fix comments
8 lines of code changed in 1 file:
energy functions for reproduction in CONDITION set elemental
2 lines of code changed in 1 file:
reproduction object functions now elemental
5 lines of code changed in 1 file:
invoke at create method too
10 lines of code changed in 1 file:
properly renamed reproduction functions; invoke init at indiviual agent init
21 lines of code changed in 1 file:
moved reproduction object to separate REPRODUCTION type in THE_BODT
189 lines of code changed in 1 file:
in (genome_n_reproductions_increment) implemented (n_offspring_reproduction_fix) subfunction, and parameters; NOTE: needs moving length2mass to COMMONDATA from THE_BODY
136 lines of code changed in 1 file:
scaled down
1373 lines of code changed in 1 file:
plot for offspring fraction of body mass
1373 lines of code changed in 2 files:
in (reproduce_do_execute) increment the number of reproductions, added n_reproductions in THE_GENOME
75 lines of code changed in 1 file:
fixed predictive scheme
5098 lines of code changed in 3 files:
numberef refs
4 lines of code changed in 1 file:
formatting
5 lines of code changed in 1 file:
added robots
2 lines of code changed in 1 file:
added papers
18 lines of code changed in 1 file:
delete note
0 lines of code changed in 1 file:
small additions
31 lines of code changed in 1 file:
fix
0 lines of code changed in 1 file:
ahaweb
2 lines of code changed in 1 file:
fix added links
0 lines of code changed in 1 file:
added links
7 lines of code changed in 1 file:
fix link
2 lines of code changed in 1 file:
added binary downloads
15 lines of code changed in 1 file:
fix misprint
2197 lines of code changed in 3 files:
scale svg 780 px
11 lines of code changed in 1 file:
fix dia svg, text broken in browser if starts with quotes
2586 lines of code changed in 3 files:
fixed wrong weighting
7456 lines of code changed in 3 files:
added stochastic weighting of exected arousals
0 lines of code changed in 1 file:
scaled up scheme
7 lines of code changed in 1 file:
svg width 750
7 lines of code changed in 1 file:
increased size to 700
6507 lines of code changed in 1 file:
fix fonts , now cairo svg
1120 lines of code changed in 1 file:
increased fonts
13265 lines of code changed in 3 files:
margin broken in dia svg , did 0.4
194 lines of code changed in 1 file:
increased svg to 40%
137 lines of code changed in 1 file:
reduce svg from dia, as huge in html output
1457 lines of code changed in 1 file:
replace dia file by standard svg + eps
2 lines of code changed in 1 file:
added svg and eps from dia, diafile is not included
13094 lines of code changed in 2 files:
small fix absolute path
1 lines of code changed in 1 file:
fix dia tag, added title and size
1 lines of code changed in 1 file:
test embed dia file
2 lines of code changed in 1 file:
fix dia graph
0 lines of code changed in 1 file:
added plot scheme for doxygen
0 lines of code changed in 1 file:
visual range functions require module :: notation to render correctly
10 lines of code changed in 1 file:
minor fix
4 lines of code changed in 1 file:
added small note on srgetr parameters
5 lines of code changed in 1 file:
minor fix doxygen
7 lines of code changed in 1 file:
doxygen small fix
9 lines of code changed in 1 file:
changelog updated
52 lines of code changed in 1 file:
another micro fix
1 lines of code changed in 1 file:
minor fix doxygen
3 lines of code changed in 1 file:
named if block added
4 lines of code changed in 1 file:
deleted disabled obsolete code in (body_mass_is_starvation_check); check energy reserves of the agent at (reproduce_do_execute); introduced cost of unsuccessful reproduction, parameter 'REPRODUCTION_COST_UNSUCCESS'
57 lines of code changed in 1 file:
now using the (is_starved) backend in (body_mass_is_starvation_check)
12 lines of code changed in 1 file:
implemented (is_starved) as backend for (body_mass_is_starvation_check), so far not used in the frontend (body_mass_is_starvation_check)
53 lines of code changed in 1 file:
continue implementing (reproduce_do_execute): step 2 decrement body mass as cost of reproduction and length to keep history stacks in sync
11 lines of code changed in 1 file:
done setter-procedure (condition_body_length_set_update_hist)
40 lines of code changed in 1 file:
set-accessor for body mass (condition_body_mass_set_update_hist)
54 lines of code changed in 1 file:
do implementation of (reproduce_do_execute): step 1 done
53 lines of code changed in 1 file:
doxygen cleanup in (eat_food_item_do_execute)
8 lines of code changed in 2 files:
cleanup doxygen in (eat_food_item_do_execute)
47 lines of code changed in 1 file:
rudimentary (behaviour_do_reproduce) in the agent's 'BEHAVIOUR' class
46 lines of code changed in 1 file:
fix reference to proc in doxygen: real names linked with module, e.g. the_neurobio::reproduce_do_this()
1 lines of code changed in 1 file:
fixed doxygen comments for (do_this) procedures in 'eat_food' and 'reproduce'
29 lines of code changed in 1 file:
doxygene style: cross-refs for procedures
7 lines of code changed in 1 file:
doxygen fix subroutine as weblink
2 lines of code changed in 1 file:
doxygen fix
5 lines of code changed in 1 file:
small change comments
105 lines of code changed in 2 files:
deleted old code
added new growth equation (marked with TEST)
forward simulation stops when individual reaches max length
27 lines of code changed in 1 file:
deleted old code
6 lines of code changed in 1 file:
fix doxygen comments
14 lines of code changed in 1 file:
doxygen fix
14 lines of code changed in 1 file:
fix doxygen
4 lines of code changed in 1 file:
doxygen fix
2 lines of code changed in 1 file:
another fix doxygen
7 lines of code changed in 1 file:
small fix doxygen
2 lines of code changed in 1 file:
doxygev comments fixed
13 lines of code changed in 1 file:
done implementation of (reproduce_motivations_expect)
21 lines of code changed in 1 file:
started step 3 in (reproduce_motivations_expect)
14 lines of code changed in 1 file:
did 'reproduce' for step 2 expectancy assessment in (reproduce_motivations_expect)
41 lines of code changed in 1 file:
did active avoidance for step 2 expectancy assessment in (reproduce_motivations_expect)
36 lines of code changed in 1 file:
done hunger and passive avoidance for step 2 expectancy assessment in (reproduce_motivations_expect)
42 lines of code changed in 1 file:
fix doxygebn comments in (motivations_expect)
11 lines of code changed in 1 file:
fix perception_override_bodymass in (reproduce_motivations_expect)
0 lines of code changed in 1 file:
implemented (reproduction_cost_energy); added first step2 expectancy assessment with perception overrides in (reproduce_motivations_expect)
61 lines of code changed in 1 file:
small fix comments
10 lines of code changed in 1 file:
first implementation part of (expectancies_calculate) for reproduction
147 lines of code changed in 1 file:
updated latest changes from budaev
147888 lines of code changed in 80 files:
merged latest from branch
8 lines of code changed in 1 file:
added all revert following wrong merge
8 lines of code changed in 1 file:
merged latest changes from sbudaev
12 lines of code changed in 1 file:
fix non-initialised filename crashing in DEBUG mode; workaround against non-provided interpolation array, then plots grid only
12 lines of code changed in 1 file:
merged latest changes from sbudaev
9385 lines of code changed in 11 files:
fix platform rm and mv, workaround for non-deletion of directories due to expansion (?= -> :=)
4 lines of code changed in 1 file:
added link to cloud desktop at software requirements
5 lines of code changed in 1 file:
parameters for number of switches
5 lines of code changed in 1 file:
small change for knitr quirk, avoid placing barplots by side
2 lines of code changed in 1 file:
streaks2 data, only other variables
5 lines of code changed in 1 file:
added full non-broken model and plot
16 lines of code changed in 1 file:
x and y labels
8 lines of code changed in 1 file:
range is parameter
5 lines of code changed in 1 file:
small change in range for better AIC plots
1 lines of code changed in 1 file:
added adjustable plot label
5 lines of code changed in 1 file:
converted script to function (breakdown.linear.model)
84 lines of code changed in 1 file:
added barplots for aic and mse
6 lines of code changed in 1 file:
small changes for stand-alone use: get data from csv, use print for output
12 lines of code changed in 1 file:
added AIC-based breakpoint optimality
27 lines of code changed in 1 file:
change comments
6 lines of code changed in 1 file:
headurl deleted as too long
0 lines of code changed in 1 file:
minor fix
3 lines of code changed in 1 file:
formatting only, long lines in R
6 lines of code changed in 1 file:
added keywords
10 lines of code changed in 1 file:
named parameters "model.piecewise$coefficients[ N ]" in breakdown plot instead of copy/paste coefficients values
3 lines of code changed in 1 file:
added project data and scripts to r breakpoint regression for Lars' project
59 lines of code changed in 3 files:
added list of machines
2 lines of code changed in 1 file:
merged Camilla's latest changes
1 lines of code changed in 1 file:
Updated with autodouble for ifort as we have gotten different answers.
1 lines of code changed in 1 file:
Replaced with the code from trunk.
39 lines of code changed in 2 files:
removed capture probability (not used)
0 lines of code changed in 1 file:
changed interpolation for fish in maximum length category
34 lines of code changed in 1 file:
Updated code by adding a test so the animal's can't shrink in length.
12 lines of code changed in 1 file:
Set default compiler to ifort and added a message with compiler used in addition to platform.
4 lines of code changed in 1 file:
Integrated changes for Windows compatibility
35 lines of code changed in 1 file:
Reformatted the file to fit each topic better, and added the command for meld.
16 lines of code changed in 1 file:
Updated to reflect the changes in trunk.
3 lines of code changed in 1 file:
added ifort's pdb and ilk temp files in clean target
1 lines of code changed in 1 file:
more doxygen cleanups
19 lines of code changed in 1 file:
doxygen small fix
11 lines of code changed in 2 files:
fix debug symbols option on windows and ifort
1 lines of code changed in 1 file:
fixed windows compiler options for ifort
3 lines of code changed in 1 file:
updated Makefile for running on Unix as well as Windows platforms
33 lines of code changed in 1 file:
doxygen cleanup further minor fix
3 lines of code changed in 1 file:
correction of reserve calculation in forward simulation
3 lines of code changed in 1 file:
cleanup doxygen
8 lines of code changed in 1 file:
fix doxygen comments for (sex_steroids_update_increment)
10 lines of code changed in 1 file:
reimplemented 'length_increment' value in (sex_steroids_update_increment), old implementation is so far commented out but not deleted
41 lines of code changed in 1 file:
doxygen cleanup: more cleanups in the body
28 lines of code changed in 1 file:
added steroid increment factor by length plot
0 lines of code changed in 2 files:
Edited script for work with 130 timesteps.
1 lines of code changed in 1 file:
Changed to reflect changes in tunk.
4 lines of code changed in 1 file:
Set m1 to 0.6 and m2 to 0.8
2 lines of code changed in 1 file:
Changed t_max to 150 (for some weird reason this was not saved) and declared conversion_efficiency_reserves and conversion_efficiency_growth seperatly to make the code easier to read.
3 lines of code changed in 1 file:
Changed to reflect changes in tunk.
68 lines of code changed in 1 file:
divided conversion efficiency into conv. efficiency for buidling / draining reserves and growth
68 lines of code changed in 1 file:
Changed to reflect changes in tunk.
172 lines of code changed in 2 files:
Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90).
24 lines of code changed in 1 file:
new parameters for conversion efficiency
2 lines of code changed in 1 file:
changed calculation of survival (main / interaction effects)
divided conversion efficiency into conv. eff. for building / draining from reserves and building soma
185 lines of code changed in 1 file:
small fix list
2 lines of code changed in 1 file:
added more details on build
8 lines of code changed in 1 file:
more small fix doxygen
12 lines of code changed in 1 file:
another small fix
4 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
doxygen cleanuop: timer object
10 lines of code changed in 1 file:
small chenge added
5 lines of code changed in 1 file:
fixed x-axis
1281 lines of code changed in 2 files:
doxygen cleanup: added latex plots
12 lines of code changed in 1 file:
reduced plots, too big in pdf
3643 lines of code changed in 4 files:
another small doxygen fix
5 lines of code changed in 2 files:
doxygen, one more small fix
1 lines of code changed in 1 file:
another fix doxygen
7 lines of code changed in 1 file:
doxygen further fix
9 lines of code changed in 1 file:
fix doxygen small
7 lines of code changed in 1 file:
another fix
4 lines of code changed in 1 file:
doxygen cleanup (body_len_grow_calculate_increment_step)
10 lines of code changed in 1 file:
doxygen cleanup (body_len_grow_calculate_increment_step)
19 lines of code changed in 1 file:
doxygen small fix
1 lines of code changed in 1 file:
small fix doxygen
4 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
cleanup doxygen comments for linear growth increment factor, added plot
4 lines of code changed in 1 file:
added growth increment factor interpolation plots
1604 lines of code changed in 2 files:
fix comment small
1 lines of code changed in 1 file:
another small fix, doxy style
9 lines of code changed in 1 file:
minor fix doxy
3 lines of code changed in 1 file:
added % escape doxygen quirk workaround to doxygen style description
10 lines of code changed in 1 file:
test fix % in doxygen
2 lines of code changed in 1 file:
returned back MOTIVATION_COMPET_THRESHOLD_CURVE_ABSCISSA and MOTIVATION_COMPET_THRESHOLD_CURVE_ORDINATE
2 lines of code changed in 1 file:
Set precision in a portable way: real kind=PREC_REAL.
49 lines of code changed in 1 file:
Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90).
8 lines of code changed in 1 file:
Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90). Also turned on interpolation of hormones in forward.
127 lines of code changed in 1 file:
Having some trouble with running the correct version of the model
7 lines of code changed in 1 file:
micro fix, check dixygen %
2 lines of code changed in 1 file:
micro fix
2 lines of code changed in 2 files:
split reprfact_decrement_from_reproduce into separate steroid components in REPRODUCE class
32 lines of code changed in 1 file:
implemented stochastic boolean (reproduction_success_stochast) function to determine the actual outcome of reproduction; use it in (reproduce_do_this)
71 lines of code changed in 1 file:
small addition comment
2 lines of code changed in 1 file:
started implementation of reproductio behaviour, (reproduce_do_this)
48 lines of code changed in 1 file:
merged from camilla's branch
0 lines of code changed in 4 files:
another small fix
2 lines of code changed in 1 file:
small fix
1 lines of code changed in 1 file:
doxygen select food item procedure
24 lines of code changed in 1 file:
small fix, one more
3 lines of code changed in 1 file:
small fix
2 lines of code changed in 1 file:
small fix doxygen
17 lines of code changed in 1 file:
doxygen cleanup eat_food_item_motivations_expect
51 lines of code changed in 1 file:
added on updates debian system
38 lines of code changed in 1 file:
fixed wrong direction of diamond sign on scheme
15 lines of code changed in 3 files:
added folder.f90 that was absent in camilla's branch
0 lines of code changed in 1 file:
Reformatted some comments to make the code easier to read.
24 lines of code changed in 1 file:
Reformatted the code to be more readable.
19 lines of code changed in 2 files:
small fix format
0 lines of code changed in 2 files:
copied Camilla's Makefile to trunk/scripts as a basis for non-aha Makefile template, for small projects that do not use HEDTOOLS
108 lines of code changed in 1 file:
increased latest pics
3 lines of code changed in 1 file:
smal fix, disable audio in settings
4 lines of code changed in 1 file:
Changed len=: to len=* in line 21254
2 lines of code changed in 1 file:
small fix
5 lines of code changed in 1 file:
added DPI fix for cloud pc
10 lines of code changed in 1 file:
merged all latest fixes
20 lines of code changed in 2 files:
additional debugging options for ifort
2 lines of code changed in 2 files:
small fix
2 lines of code changed in 1 file:
set precision in portable way, real kind=PREC_REAL defined in parameters.f90
159 lines of code changed in 4 files:
Updated to the newest version in trunk.
86 lines of code changed in 2 files:
deleted automatic double type as real*8 is already here
14 lines of code changed in 1 file:
added code for saving figures to jpg / fig
removed for-loops
78 lines of code changed in 1 file:
added code for saving figures to jpg / fig
8 lines of code changed in 1 file:
move IF_FFLAGS above ifdef DEBUG
7 lines of code changed in 1 file:
Changed model default to be used with interpolation for hormone categories in forward.
3 lines of code changed in 1 file:
Some minor changes to plotting.
1 lines of code changed in 1 file:
small changes
9 lines of code changed in 1 file:
Removed some comments
18 lines of code changed in 1 file:
minor fix
14 lines of code changed in 1 file:
merged config xfce
9 lines of code changed in 1 file:
minor fix, added makefile config for thunar
9 lines of code changed in 1 file:
merged latest
6 lines of code changed in 2 files:
more added
6 lines of code changed in 2 files:
more cleanups, white space
12 lines of code changed in 1 file:
added more comments and cleanup
19 lines of code changed in 1 file:
added building with the debugging symbols included, to do this set DEBUG to some value, e.g. : make DEBUG=1
16 lines of code changed in 1 file:
merged latest details on codeblocks initial config
7 lines of code changed in 2 files:
more details on codeblocks initial config
7 lines of code changed in 2 files:
merged latest
11 lines of code changed in 2 files:
added initial project setup
8 lines of code changed in 2 files:
deleted real source file from the project, placed fake file
100 lines of code changed in 1 file:
added standard targets and some notes, compatibility with the aha codeblocks project
13 lines of code changed in 1 file:
added gfortran docs
3 lines of code changed in 1 file:
merged latest changes
3 lines of code changed in 1 file:
minor change
3 lines of code changed in 1 file:
merged latest doc changes from bransh
67 lines of code changed in 4 files:
minor fix
2 lines of code changed in 1 file:
minor fix
1 lines of code changed in 1 file:
minor fix
5 lines of code changed in 2 files:
do delete later to reduce downtime
7 lines of code changed in 1 file:
delete before copy to minimise downtime
8 lines of code changed in 1 file:
added more on thunar actions
8 lines of code changed in 2 files:
added on thunar actions
10 lines of code changed in 2 files:
fix doc on cloud workstation
44 lines of code changed in 2 files:
merged fron branch
179 lines of code changed in 8 files:
minor fix
2 lines of code changed in 1 file:
more details on cloud workstation
17 lines of code changed in 4 files:
doxygen cleanup, minor fixes
3 lines of code changed in 1 file:
small fixes
10 lines of code changed in 1 file:
changelog updated
100 lines of code changed in 2 files:
updated template from working file
51 lines of code changed in 1 file:
portability, use unix/windows platform utils via variables
14 lines of code changed in 1 file:
portability, use unix/windows platform utils via variables
24 lines of code changed in 2 files:
added more text to web headpage
11 lines of code changed in 2 files:
added more text to web headpage
45 lines of code changed in 1 file:
web ip address of ahaweb server and debian path
22 lines of code changed in 4 files:
now use web ip address of ahaweb server, 158.37.63.57
4 lines of code changed in 1 file:
web ip address of ahaweb server
1 lines of code changed in 1 file:
merged
0 lines of code changed in 1 file:
minor fix
0 lines of code changed in 1 file:
deleted MOD_AHA.adoc as it is now fully in doxygen-generated part, not this general manual
0 lines of code changed in 1 file:
merged from branch
101317 lines of code changed in 26 files:
more info on cloud -based IaaS system.
35 lines of code changed in 2 files:
minor fix
8 lines of code changed in 2 files:
added cloud-based workstation AHA_Workshop to doc
64 lines of code changed in 1 file:
added screenshots for IaaS workstation
0 lines of code changed in 2 files:
Added some comments
3 lines of code changed in 1 file:
Working Makefile. Thank you so much Sergey!
33 lines of code changed in 1 file:
Started but far for finished.
62 lines of code changed in 1 file:
Trying to make a Makefile
3 lines of code changed in 1 file:
Some more minor changes to comments.
10 lines of code changed in 1 file:
Minor changes to comments.
2 lines of code changed in 2 files:
Separated parameters into a seperate file (parameters.f90).
6 lines of code changed in 1 file:
File with a module containing all the parameters to hormone model (Hormones_v2.f90).
56 lines of code changed in 1 file:
Added svn tags
2 lines of code changed in 1 file:
File with parameter files for Hormones_v2.f90
56 lines of code changed in 1 file:
Put parameters in seperate file.
6 lines of code changed in 1 file:
Replaced old version with the one from trunk.
242 lines of code changed in 3 files:
Christian debugged. Several changes, Jacqueline has list in her notes.
138 lines of code changed in 1 file:
Christian debugged. Minor changes.
20 lines of code changed in 1 file:
Christian debugged. Changed code for stacked area charts.
31 lines of code changed in 1 file:
fix uninitialised vars
3 lines of code changed in 1 file:
fix uninitialised var
1 lines of code changed in 1 file:
doxygen cleanup: latex eps graphs fixed width 14 cm now
8 lines of code changed in 1 file:
updated changelog
50 lines of code changed in 1 file:
deleted unneeded codeblocks files, they are autogenerated, only cbp is essential
0 lines of code changed in 2 files:
added installation for user-built PGPLOT
12 lines of code changed in 2 files:
added template for cb
9 lines of code changed in 1 file:
added codeblocks template project files
105 lines of code changed in 3 files:
doxygen, minor fix weblink
2 lines of code changed in 1 file:
doxygen fix, utf quotes ane signs are not rendered well, changed to ascii
6 lines of code changed in 1 file:
added a short intro to the aha model at mainpage
28 lines of code changed in 1 file:
1 lines of code changed in 1 file: