March 2017 Commit Log

Number of Commits:
330
Number of Active Developers:
6
sbu062 2017-03-31 20:05 Rev.: 3218

fix doxygen

4 lines of code changed in 1 file:

sbu062 2017-03-31 19:40 Rev.: 3217

small fix doxygen comments

3 lines of code changed in 1 file:

sbu062 2017-03-31 16:28 Rev.: 3216

in (reproduction_mass_offspring_calc) deleted mult_factor parameter

2 lines of code changed in 1 file:

sbu062 2017-03-31 16:24 Rev.: 3215

small fix

5 lines of code changed in 1 file:

sbu062 2017-03-31 16:16 Rev.: 3214

fix comments in (reproduction_cost_energy_dynamic)

15 lines of code changed in 1 file:

sbu062 2017-03-31 15:13 Rev.: 3213

add commends

28 lines of code changed in 1 file:

sbu062 2017-03-31 12:46 Rev.: 3212

procedure (reproduction_cost_energy_dynamic) implements dynamic cost that is different in males and females and depend on the combined offspring mass and agent's mass

77 lines of code changed in 1 file:

sbu062 2017-03-31 09:51 Rev.: 3211

added arbitrary multiplier in (reproduction_mass_offspring_calc)

21 lines of code changed in 1 file:

sbu062 2017-03-29 09:42 Rev.: 3210

small change comments

3 lines of code changed in 1 file:

sbu062 2017-03-29 09:39 Rev.: 3209

small fixes

2 lines of code changed in 1 file:

sbu062 2017-03-29 09:35 Rev.: 3208

isolated calculation of the overall offspring mass into (reproduction_mass_offspring_calc) function

43 lines of code changed in 1 file:

sbu062 2017-03-29 09:17 Rev.: 3207

renamed (reproduction_n_offspring_)

3 lines of code changed in 1 file:

sbu062 2017-03-29 09:07 Rev.: 3206

moved (n_offspring_reproduction) out of (reproduction_n_increment), into separate (reproduction_n_offspring_reprod) function, type bound to REPRODUCTION class

77 lines of code changed in 1 file:

sbu062 2017-03-28 12:31 Rev.: 3205

(maximum_n_reproductions) skeleton implementation, need testosterone in conspecific perception

14 lines of code changed in 1 file:

sbu062 2017-03-28 12:11 Rev.: 3204

started implementing (maximum_n_reproductions) based on relative testosterone level, need to add testosterone to conspecific perception first

36 lines of code changed in 1 file:

sbu062 2017-03-28 11:33 Rev.: 3203

fix increment n offspring in (reproduction_n_increment); started implementing (maximum_n_reproductions) for multiple fertilisation per event

36 lines of code changed in 1 file:

sbu062 2017-03-28 11:18 Rev.: 3202

fixed optional is_reproduce in (reproduce_do_this); invoke (reproductions_increment), added sub-procedure (reproduction_unsuccessful_cost)

59 lines of code changed in 1 file:

sbu062 2017-03-28 10:09 Rev.: 3201

another comment addition

4 lines of code changed in 1 file:

sbu062 2017-03-28 09:45 Rev.: 3200

test didn't work with length2mass()

1 lines of code changed in 1 file:

sbu062 2017-03-28 09:44 Rev.: 3199

test doxygen function start from ::

1 lines of code changed in 1 file:

sbu062 2017-03-28 09:41 Rev.: 3198

another fix comments

9 lines of code changed in 1 file:

sbu062 2017-03-28 09:38 Rev.: 3197

fix note

5 lines of code changed in 1 file:

sbu062 2017-03-28 09:34 Rev.: 3196

small changes

2 lines of code changed in 1 file:

sbu062 2017-03-28 09:31 Rev.: 3195

small note

5 lines of code changed in 1 file:

sbu062 2017-03-28 09:23 Rev.: 3194

fix note

7 lines of code changed in 1 file:

sbu062 2017-03-28 09:21 Rev.: 3193

small fix note

4 lines of code changed in 1 file:

sbu062 2017-03-28 09:19 Rev.: 3192

add small note

5 lines of code changed in 1 file:

sbu062 2017-03-28 09:15 Rev.: 3191

add reproduction success indicators into (population_save_data_all_agents_csv)

7 lines of code changed in 1 file:

sbu062 2017-03-28 09:06 Rev.: 3190

renames, shorter

8 lines of code changed in 1 file:

sbu062 2017-03-28 08:05 Rev.: 3189

minor changes

8 lines of code changed in 1 file:

sbu062 2017-03-28 05:13 Rev.: 3188

fix: multiply by n of reproductions

4 lines of code changed in 1 file:

sbu062 2017-03-28 05:09 Rev.: 3187

in (reproduction_n_reproductions_increment) invoke (n_offspring_reproduction_fix) to calculate number of offspring

23 lines of code changed in 1 file:

sbu062 2017-03-28 03:56 Rev.: 3186

doxygen include refs to public parameters from commondata

3 lines of code changed in 1 file:

sbu062 2017-03-28 03:52 Rev.: 3185

test inclusion doxygen parameters from commondata, need style

4 lines of code changed in 1 file:

sbu062 2017-03-28 03:46 Rev.: 3184

small changes, use floor for number of offspring from ratio

7 lines of code changed in 1 file:

sbu062 2017-03-28 03:29 Rev.: 3183

small fix comments

8 lines of code changed in 1 file:

sbu062 2017-03-28 03:14 Rev.: 3182

energy functions for reproduction in CONDITION set elemental

2 lines of code changed in 1 file:

sbu062 2017-03-28 03:12 Rev.: 3181

reproduction object functions now elemental

5 lines of code changed in 1 file:

sbu062 2017-03-28 03:05 Rev.: 3180

invoke at create method too

10 lines of code changed in 1 file:

sbu062 2017-03-28 02:58 Rev.: 3179

properly renamed reproduction functions; invoke init at indiviual agent init

21 lines of code changed in 1 file:

sbu062 2017-03-28 02:51 Rev.: 3178

moved reproduction object to separate REPRODUCTION type in THE_BODT

189 lines of code changed in 1 file:

sbu062 2017-03-27 20:44 Rev.: 3177

in (genome_n_reproductions_increment) implemented (n_offspring_reproduction_fix) subfunction, and parameters; NOTE: needs moving length2mass to COMMONDATA from THE_BODY

136 lines of code changed in 1 file:

sbu062 2017-03-27 19:49 Rev.: 3176

scaled down

1373 lines of code changed in 1 file:

sbu062 2017-03-27 19:48 Rev.: 3175

plot for offspring fraction of body mass

1373 lines of code changed in 2 files:

sbu062 2017-03-27 12:42 Rev.: 3174

in (reproduce_do_execute) increment the number of reproductions, added n_reproductions in THE_GENOME

75 lines of code changed in 1 file:

sbu062 2017-03-26 12:22 Rev.: 3173

fixed predictive scheme

5098 lines of code changed in 3 files:

sbu062 2017-03-25 22:07 Rev.: 3172

numberef refs

4 lines of code changed in 1 file:

sbu062 2017-03-25 21:55 Rev.: 3171

formatting

5 lines of code changed in 1 file:

sbu062 2017-03-25 14:20 Rev.: 3170

added robots

2 lines of code changed in 1 file:

sbu062 2017-03-25 14:18 Rev.: 3169

added papers

18 lines of code changed in 1 file:

sbu062 2017-03-25 14:11 Rev.: 3168

delete note

0 lines of code changed in 1 file:

sbu062 2017-03-25 14:09 Rev.: 3167

small additions

31 lines of code changed in 1 file:

sbu062 2017-03-25 13:54 Rev.: 3166

fix

0 lines of code changed in 1 file:

sbu062 2017-03-25 13:42 Rev.: 3165

ahaweb

2 lines of code changed in 1 file:

sbu062 2017-03-25 11:54 Rev.: 3164

fix added links

0 lines of code changed in 1 file:

sbu062 2017-03-25 11:52 Rev.: 3163

added links

7 lines of code changed in 1 file:

sbu062 2017-03-25 09:58 Rev.: 3162

fix link

2 lines of code changed in 1 file:

sbu062 2017-03-25 09:55 Rev.: 3161

added binary downloads

15 lines of code changed in 1 file:

sbu062 2017-03-25 08:26 Rev.: 3160

fix misprint

2197 lines of code changed in 3 files:

sbu062 2017-03-25 07:55 Rev.: 3159

scale svg 780 px

11 lines of code changed in 1 file:

sbu062 2017-03-25 07:49 Rev.: 3158

fix dia svg, text broken in browser if starts with quotes

2586 lines of code changed in 3 files:

sbu062 2017-03-25 07:26 Rev.: 3157

fixed wrong weighting

7456 lines of code changed in 3 files:

sbu062 2017-03-24 22:09 Rev.: 3156

added stochastic weighting of exected arousals

0 lines of code changed in 1 file:

sbu062 2017-03-24 21:52 Rev.: 3155

scaled up scheme

7 lines of code changed in 1 file:

sbu062 2017-03-24 17:36 Rev.: 3154

svg width 750

7 lines of code changed in 1 file:

sbu062 2017-03-24 17:33 Rev.: 3153

increased size to 700

6507 lines of code changed in 1 file:

sbu062 2017-03-24 17:29 Rev.: 3152

fix fonts , now cairo svg

1120 lines of code changed in 1 file:

sbu062 2017-03-24 17:20 Rev.: 3151

increased fonts

13265 lines of code changed in 3 files:

sbu062 2017-03-24 15:25 Rev.: 3150

margin broken in dia svg , did 0.4

194 lines of code changed in 1 file:

sbu062 2017-03-24 15:22 Rev.: 3149

increased svg to 40%

137 lines of code changed in 1 file:

sbu062 2017-03-24 15:18 Rev.: 3148

reduce svg from dia, as huge in html output

1457 lines of code changed in 1 file:

sbu062 2017-03-24 15:11 Rev.: 3147

replace dia file by standard svg + eps

2 lines of code changed in 1 file:

sbu062 2017-03-24 15:08 Rev.: 3146

added svg and eps from dia, diafile is not included

13094 lines of code changed in 2 files:

sbu062 2017-03-24 15:03 Rev.: 3145

small fix absolute path

1 lines of code changed in 1 file:

sbu062 2017-03-24 14:57 Rev.: 3144

fix dia tag, added title and size

1 lines of code changed in 1 file:

sbu062 2017-03-24 14:54 Rev.: 3143

test embed dia file

2 lines of code changed in 1 file:

sbu062 2017-03-24 14:50 Rev.: 3142

fix dia graph

0 lines of code changed in 1 file:

sbu062 2017-03-24 14:48 Rev.: 3141

added plot scheme for doxygen

0 lines of code changed in 1 file:

sbu062 2017-03-24 12:59 Rev.: 3140

visual range functions require module :: notation to render correctly

10 lines of code changed in 1 file:

sbu062 2017-03-24 12:56 Rev.: 3139

minor fix

4 lines of code changed in 1 file:

sbu062 2017-03-24 12:54 Rev.: 3138

added small note on srgetr parameters

5 lines of code changed in 1 file:

sbu062 2017-03-24 08:32 Rev.: 3137

minor fix doxygen

7 lines of code changed in 1 file:

sbu062 2017-03-23 21:04 Rev.: 3136

doxygen small fix

9 lines of code changed in 1 file:

sbu062 2017-03-23 20:56 Rev.: 3135

changelog updated

52 lines of code changed in 1 file:

sbu062 2017-03-23 20:11 Rev.: 3134

another micro fix

1 lines of code changed in 1 file:

sbu062 2017-03-23 20:09 Rev.: 3133

minor fix doxygen

3 lines of code changed in 1 file:

sbu062 2017-03-23 20:03 Rev.: 3132

named if block added

4 lines of code changed in 1 file:

sbu062 2017-03-23 19:58 Rev.: 3131

deleted disabled obsolete code in (body_mass_is_starvation_check); check energy reserves of the agent at (reproduce_do_execute); introduced cost of unsuccessful reproduction, parameter 'REPRODUCTION_COST_UNSUCCESS'

57 lines of code changed in 1 file:

sbu062 2017-03-23 16:52 Rev.: 3130

now using the (is_starved) backend in (body_mass_is_starvation_check)

12 lines of code changed in 1 file:

sbu062 2017-03-23 16:46 Rev.: 3129

implemented (is_starved) as backend for (body_mass_is_starvation_check), so far not used in the frontend (body_mass_is_starvation_check)

53 lines of code changed in 1 file:

sbu062 2017-03-23 16:19 Rev.: 3128

continue implementing (reproduce_do_execute): step 2 decrement body mass as cost of reproduction and length to keep history stacks in sync

11 lines of code changed in 1 file:

sbu062 2017-03-23 15:59 Rev.: 3127

done setter-procedure (condition_body_length_set_update_hist)

40 lines of code changed in 1 file:

sbu062 2017-03-23 15:46 Rev.: 3126

set-accessor for body mass (condition_body_mass_set_update_hist)

54 lines of code changed in 1 file:

sbu062 2017-03-23 15:02 Rev.: 3125

do implementation of (reproduce_do_execute): step 1 done

53 lines of code changed in 1 file:

sbu062 2017-03-23 14:15

doxygen cleanup in (eat_food_item_do_execute)

8 lines of code changed in 2 files:

sbu062 2017-03-23 14:06 Rev.: 3122

cleanup doxygen in (eat_food_item_do_execute)

47 lines of code changed in 1 file:

sbu062 2017-03-23 13:57 Rev.: 3121

rudimentary (behaviour_do_reproduce) in the agent's 'BEHAVIOUR' class

46 lines of code changed in 1 file:

sbu062 2017-03-23 13:14 Rev.: 3120

fix reference to proc in doxygen: real names linked with module, e.g. the_neurobio::reproduce_do_this()

1 lines of code changed in 1 file:

sbu062 2017-03-23 13:09 Rev.: 3119

fixed doxygen comments for (do_this) procedures in 'eat_food' and 'reproduce'

29 lines of code changed in 1 file:

sbu062 2017-03-23 12:35 Rev.: 3118

doxygene style: cross-refs for procedures

7 lines of code changed in 1 file:

sbu062 2017-03-23 12:29 Rev.: 3117

doxygen fix subroutine as weblink

2 lines of code changed in 1 file:

sbu062 2017-03-23 12:26 Rev.: 3116

doxygen fix

5 lines of code changed in 1 file:

sbu062 2017-03-23 11:02 Rev.: 3115

small change comments

105 lines of code changed in 2 files:

jwe041 2017-03-23 09:58 Rev.: 3114

deleted old code

added new growth equation (marked with TEST)

forward simulation stops when individual reaches max length

27 lines of code changed in 1 file:

jwe041 2017-03-23 09:57 Rev.: 3113

deleted old code

6 lines of code changed in 1 file:

sbu062 2017-03-22 20:51 Rev.: 3112

fix doxygen comments

14 lines of code changed in 1 file:

sbu062 2017-03-22 20:44 Rev.: 3111

doxygen fix

14 lines of code changed in 1 file:

sbu062 2017-03-22 20:41 Rev.: 3110

fix doxygen

4 lines of code changed in 1 file:

sbu062 2017-03-22 20:38 Rev.: 3109

doxygen fix

2 lines of code changed in 1 file:

sbu062 2017-03-22 20:33 Rev.: 3108

another fix doxygen

7 lines of code changed in 1 file:

sbu062 2017-03-22 20:22 Rev.: 3107

small fix doxygen

2 lines of code changed in 1 file:

sbu062 2017-03-22 20:17 Rev.: 3106

doxygev comments fixed

13 lines of code changed in 1 file:

sbu062 2017-03-22 20:02 Rev.: 3105

done implementation of (reproduce_motivations_expect)

21 lines of code changed in 1 file:

sbu062 2017-03-22 19:58 Rev.: 3104

started step 3 in (reproduce_motivations_expect)

14 lines of code changed in 1 file:

sbu062 2017-03-22 19:54 Rev.: 3103

did 'reproduce' for step 2 expectancy assessment in (reproduce_motivations_expect)

41 lines of code changed in 1 file:

sbu062 2017-03-22 19:38 Rev.: 3102

did active avoidance for step 2 expectancy assessment in (reproduce_motivations_expect)

36 lines of code changed in 1 file:

sbu062 2017-03-22 19:07 Rev.: 3101

done hunger and passive avoidance for step 2 expectancy assessment in (reproduce_motivations_expect)

42 lines of code changed in 1 file:

sbu062 2017-03-22 18:40 Rev.: 3100

fix doxygebn comments in (motivations_expect)

11 lines of code changed in 1 file:

sbu062 2017-03-22 17:22 Rev.: 3099

fix perception_override_bodymass in (reproduce_motivations_expect)

0 lines of code changed in 1 file:

sbu062 2017-03-22 16:16 Rev.: 3098

implemented (reproduction_cost_energy); added first step2 expectancy assessment with perception overrides in (reproduce_motivations_expect)

61 lines of code changed in 1 file:

sbu062 2017-03-22 13:29 Rev.: 3097

small fix comments

10 lines of code changed in 1 file:

sbu062 2017-03-22 13:17 Rev.: 3096

first implementation part of (expectancies_calculate) for reproduction

147 lines of code changed in 1 file:

sbu062 2017-03-21 16:30 Rev.: 3094

updated latest changes from budaev

147888 lines of code changed in 80 files:

sbu062 2017-03-21 16:05 Rev.: 3093

merged latest from branch

8 lines of code changed in 1 file:

sbu062 2017-03-21 16:04 Rev.: 3092

added all revert following wrong merge

8 lines of code changed in 1 file:

sbu062 2017-03-21 15:57 Rev.: 3091

merged latest changes from sbudaev

12 lines of code changed in 1 file:

sbu062 2017-03-21 15:36 Rev.: 3090

fix non-initialised filename crashing in DEBUG mode; workaround against non-provided interpolation array, then plots grid only

12 lines of code changed in 1 file:

sbu062 2017-03-21 14:35 Rev.: 3089

merged latest changes from sbudaev

9385 lines of code changed in 11 files:

sbu062 2017-03-21 10:56 Rev.: 3088

fix platform rm and mv, workaround for non-deletion of directories due to expansion (?= -> :=)

4 lines of code changed in 1 file:

sbu062 2017-03-21 10:30 Rev.: 3087

added link to cloud desktop at software requirements

5 lines of code changed in 1 file:

sbu062 2017-03-20 19:02 Rev.: 3086

parameters for number of switches

5 lines of code changed in 1 file:

sbu062 2017-03-20 18:55 Rev.: 3085

small change for knitr quirk, avoid placing barplots by side

2 lines of code changed in 1 file:

sbu062 2017-03-20 18:38 Rev.: 3084

streaks2 data, only other variables

5 lines of code changed in 1 file:

sbu062 2017-03-20 18:10 Rev.: 3083

added full non-broken model and plot

16 lines of code changed in 1 file:

sbu062 2017-03-20 13:56 Rev.: 3082

x and y labels

8 lines of code changed in 1 file:

sbu062 2017-03-20 13:16 Rev.: 3081

range is parameter

5 lines of code changed in 1 file:

sbu062 2017-03-20 13:05 Rev.: 3080

small change in range for better AIC plots

1 lines of code changed in 1 file:

sbu062 2017-03-20 12:17 Rev.: 3079

added adjustable plot label

5 lines of code changed in 1 file:

sbu062 2017-03-20 11:40 Rev.: 3078

converted script to function (breakdown.linear.model)

84 lines of code changed in 1 file:

sbu062 2017-03-20 11:22 Rev.: 3077

added barplots for aic and mse

6 lines of code changed in 1 file:

sbu062 2017-03-20 10:54 Rev.: 3076

small changes for stand-alone use: get data from csv, use print for output

12 lines of code changed in 1 file:

sbu062 2017-03-20 08:53 Rev.: 3075

added AIC-based breakpoint optimality

27 lines of code changed in 1 file:

sbu062 2017-03-20 07:34 Rev.: 3074

change comments

6 lines of code changed in 1 file:

sbu062 2017-03-19 20:54 Rev.: 3073

headurl deleted as too long

0 lines of code changed in 1 file:

sbu062 2017-03-19 13:28 Rev.: 3072

minor fix

3 lines of code changed in 1 file:

sbu062 2017-03-19 13:18 Rev.: 3071

formatting only, long lines in R

6 lines of code changed in 1 file:

sbu062 2017-03-19 13:13 Rev.: 3070

added keywords

10 lines of code changed in 1 file:

sbu062 2017-03-19 13:01 Rev.: 3068

named parameters "model.piecewise$coefficients[ N ]" in breakdown plot instead of copy/paste coefficients values

3 lines of code changed in 1 file:

sbu062 2017-03-19 12:33 Rev.: 3067

added project data and scripts to r breakpoint regression for Lars' project

59 lines of code changed in 3 files:

sbu062 2017-03-18 18:20 Rev.: 3064

added list of machines

2 lines of code changed in 1 file:

sbu062 2017-03-17 13:45 Rev.: 3063

merged Camilla's latest changes

1 lines of code changed in 1 file:

cje012 2017-03-17 08:33 Rev.: 3062

Updated with autodouble for ifort as we have gotten different answers.

1 lines of code changed in 1 file:

cje012 2017-03-17 08:30

Replaced with the code from trunk.

39 lines of code changed in 2 files:

jwe041 2017-03-16 10:31 Rev.: 3059

removed capture probability (not used)

0 lines of code changed in 1 file:

jwe041 2017-03-16 10:01 Rev.: 3058

changed interpolation for fish in maximum length category

34 lines of code changed in 1 file:

cje012 2017-03-15 11:41 Rev.: 3057

Updated code by adding a test so the animal's can't shrink in length.

12 lines of code changed in 1 file:

cje012 2017-03-15 09:09 Rev.: 3056

Set default compiler to ifort and added a message with compiler used in addition to platform.

4 lines of code changed in 1 file:

cje012 2017-03-15 09:02 Rev.: 3055

Integrated changes for Windows compatibility

35 lines of code changed in 1 file:

cje012 2017-03-15 09:00 Rev.: 3054

Reformatted the file to fit each topic better, and added the command for meld.

16 lines of code changed in 1 file:

cje012 2017-03-15 08:43 Rev.: 3053

Updated to reflect the changes in trunk.

3 lines of code changed in 1 file:

sbu062 2017-03-14 17:09 Rev.: 3052

added ifort's pdb and ilk temp files in clean target

1 lines of code changed in 1 file:

sbu062 2017-03-14 17:06 Rev.: 3051

more doxygen cleanups

19 lines of code changed in 1 file:

sbu062 2017-03-14 13:30

doxygen small fix

11 lines of code changed in 2 files:

sbu062 2017-03-14 13:19 Rev.: 3048

fix debug symbols option on windows and ifort

1 lines of code changed in 1 file:

sbu062 2017-03-14 13:06 Rev.: 3047

fixed windows compiler options for ifort

3 lines of code changed in 1 file:

sbu062 2017-03-14 11:43 Rev.: 3046

updated Makefile for running on Unix as well as Windows platforms

33 lines of code changed in 1 file:

sbu062 2017-03-14 10:46 Rev.: 3045

doxygen cleanup further minor fix

3 lines of code changed in 1 file:

jwe041 2017-03-14 08:12 Rev.: 3044

correction of reserve calculation in forward simulation

3 lines of code changed in 1 file:

sbu062 2017-03-13 17:48 Rev.: 3043

cleanup doxygen

8 lines of code changed in 1 file:

sbu062 2017-03-13 17:38 Rev.: 3042

fix doxygen comments for (sex_steroids_update_increment)

10 lines of code changed in 1 file:

sbu062 2017-03-13 17:31 Rev.: 3041

reimplemented 'length_increment' value in (sex_steroids_update_increment), old implementation is so far commented out but not deleted

41 lines of code changed in 1 file:

sbu062 2017-03-13 16:47 Rev.: 3040

doxygen cleanup: more cleanups in the body

28 lines of code changed in 1 file:

sbu062 2017-03-13 16:46 Rev.: 3039

added steroid increment factor by length plot

0 lines of code changed in 2 files:

cje012 2017-03-13 14:34 Rev.: 3038

Edited script for work with 130 timesteps.

1 lines of code changed in 1 file:

cje012 2017-03-13 11:36 Rev.: 3037

Changed to reflect changes in tunk.

4 lines of code changed in 1 file:

cje012 2017-03-13 11:33 Rev.: 3036

Set m1 to 0.6 and m2 to 0.8

2 lines of code changed in 1 file:

cje012 2017-03-13 11:31 Rev.: 3035

Changed t_max to 150 (for some weird reason this was not saved) and declared conversion_efficiency_reserves and conversion_efficiency_growth seperatly to make the code easier to read.

3 lines of code changed in 1 file:

cje012 2017-03-13 11:24 Rev.: 3034

Changed to reflect changes in tunk.

68 lines of code changed in 1 file:

jwe041 2017-03-13 10:51 Rev.: 3033

divided conversion efficiency into conv. efficiency for buidling / draining reserves and growth

68 lines of code changed in 1 file:

cje012 2017-03-13 10:46

Changed to reflect changes in tunk.

172 lines of code changed in 2 files:

cje012 2017-03-13 10:42 Rev.: 3030

Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90).

24 lines of code changed in 1 file:

jwe041 2017-03-13 10:35 Rev.: 3029

new parameters for conversion efficiency

2 lines of code changed in 1 file:

jwe041 2017-03-13 10:35 Rev.: 3028

changed calculation of survival (main / interaction effects)

divided conversion efficiency into conv. eff. for building / draining from reserves and building soma

185 lines of code changed in 1 file:

sbu062 2017-03-12 10:14 Rev.: 3027

small fix list

2 lines of code changed in 1 file:

sbu062 2017-03-12 10:11 Rev.: 3026

added more details on build

8 lines of code changed in 1 file:

sbu062 2017-03-12 10:02 Rev.: 3025

more small fix doxygen

12 lines of code changed in 1 file:

sbu062 2017-03-12 09:58 Rev.: 3024

another small fix

4 lines of code changed in 1 file:

sbu062 2017-03-12 09:54 Rev.: 3023

small fix

1 lines of code changed in 1 file:

sbu062 2017-03-12 09:00 Rev.: 3022

doxygen cleanuop: timer object

10 lines of code changed in 1 file:

sbu062 2017-03-12 08:42 Rev.: 3021

small chenge added

5 lines of code changed in 1 file:

sbu062 2017-03-11 12:40 Rev.: 3020

fixed x-axis

1281 lines of code changed in 2 files:

sbu062 2017-03-11 11:19 Rev.: 3019

doxygen cleanup: added latex plots

12 lines of code changed in 1 file:

sbu062 2017-03-11 11:01 Rev.: 3018

reduced plots, too big in pdf

3643 lines of code changed in 4 files:

sbu062 2017-03-10 23:18

another small doxygen fix

5 lines of code changed in 2 files:

sbu062 2017-03-10 23:17 Rev.: 3015

doxygen, one more small fix

1 lines of code changed in 1 file:

sbu062 2017-03-10 23:05 Rev.: 3014

another fix doxygen

7 lines of code changed in 1 file:

sbu062 2017-03-10 23:00 Rev.: 3013

doxygen further fix

9 lines of code changed in 1 file:

sbu062 2017-03-10 22:49 Rev.: 3012

fix doxygen small

7 lines of code changed in 1 file:

sbu062 2017-03-10 22:23 Rev.: 3011

another fix

4 lines of code changed in 1 file:

sbu062 2017-03-10 22:18 Rev.: 3010

doxygen cleanup (body_len_grow_calculate_increment_step)

10 lines of code changed in 1 file:

sbu062 2017-03-10 22:09 Rev.: 3009

doxygen cleanup (body_len_grow_calculate_increment_step)

19 lines of code changed in 1 file:

sbu062 2017-03-10 21:50 Rev.: 3008

doxygen small fix

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sbu062 2017-03-10 21:48 Rev.: 3007

small fix doxygen

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sbu062 2017-03-10 20:12 Rev.: 3006

small fix

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sbu062 2017-03-10 19:18 Rev.: 3005

cleanup doxygen comments for linear growth increment factor, added plot

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sbu062 2017-03-10 19:14 Rev.: 3004

added growth increment factor interpolation plots

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sbu062 2017-03-10 17:33 Rev.: 3003

fix comment small

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sbu062 2017-03-10 14:36 Rev.: 3002

another small fix, doxy style

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sbu062 2017-03-10 14:32 Rev.: 3001

minor fix doxy

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sbu062 2017-03-10 14:29 Rev.: 3000

added % escape doxygen quirk workaround to doxygen style description

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sbu062 2017-03-10 14:19 Rev.: 2999

test fix % in doxygen

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sbu062 2017-03-10 10:27 Rev.: 2998

returned back MOTIVATION_COMPET_THRESHOLD_CURVE_ABSCISSA and MOTIVATION_COMPET_THRESHOLD_CURVE_ORDINATE

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cje012 2017-03-10 10:04 Rev.: 2997

Set precision in a portable way: real kind=PREC_REAL.

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cje012 2017-03-10 10:03 Rev.: 2996

Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90).

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cje012 2017-03-10 10:02 Rev.: 2995

Set precision in a portable way (real kind=PREC_REAL defined in parameters.f90). Also turned on interpolation of hormones in forward.

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lla008 2017-03-10 09:37 Rev.: 2994

Having some trouble with running the correct version of the model

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sbu062 2017-03-09 20:37 Rev.: 2993

micro fix, check dixygen %

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sbu062 2017-03-09 17:55

micro fix

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sbu062 2017-03-09 17:51 Rev.: 2990

split reprfact_decrement_from_reproduce into separate steroid components in REPRODUCE class

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sbu062 2017-03-09 17:29 Rev.: 2989

implemented stochastic boolean (reproduction_success_stochast) function to determine the actual outcome of reproduction; use it in (reproduce_do_this)

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sbu062 2017-03-09 14:31 Rev.: 2988

small addition comment

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sbu062 2017-03-09 14:27 Rev.: 2987

started implementation of reproductio behaviour, (reproduce_do_this)

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sbu062 2017-03-09 12:17 Rev.: 2986

merged from camilla's branch

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sbu062 2017-03-09 11:08 Rev.: 2985

another small fix

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sbu062 2017-03-09 11:05 Rev.: 2984

small fix

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sbu062 2017-03-09 11:00 Rev.: 2983

doxygen select food item procedure

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sbu062 2017-03-09 10:50 Rev.: 2982

small fix, one more

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sbu062 2017-03-09 10:49 Rev.: 2981

small fix

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sbu062 2017-03-09 10:46 Rev.: 2980

small fix doxygen

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sbu062 2017-03-09 10:41 Rev.: 2979

doxygen cleanup eat_food_item_motivations_expect

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sbu062 2017-03-09 09:41 Rev.: 2978

added on updates debian system

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sbu062 2017-03-09 07:43 Rev.: 2977

fixed wrong direction of diamond sign on scheme

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sbu062 2017-03-08 19:30 Rev.: 2976

added folder.f90 that was absent in camilla's branch

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cje012 2017-03-08 09:18 Rev.: 2975

Reformatted some comments to make the code easier to read.

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cje012 2017-03-08 09:06

Reformatted the code to be more readable.

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sbu062 2017-03-07 20:45 Rev.: 2972

small fix format

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sbu062 2017-03-07 13:37 Rev.: 2969

copied Camilla's Makefile to trunk/scripts as a basis for non-aha Makefile template, for small projects that do not use HEDTOOLS

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sbu062 2017-03-07 12:55 Rev.: 2968

increased latest pics

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sbu062 2017-03-07 12:48 Rev.: 2967

smal fix, disable audio in settings

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lla008 2017-03-07 10:24 Rev.: 2966

Changed len=: to len=* in line 21254

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sbu062 2017-03-07 09:33 Rev.: 2965

small fix

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sbu062 2017-03-07 09:29 Rev.: 2964

added DPI fix for cloud pc

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sbu062 2017-03-06 19:24 Rev.: 2963

merged all latest fixes

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sbu062 2017-03-06 19:10

additional debugging options for ifort

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sbu062 2017-03-06 17:08 Rev.: 2960

small fix

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sbu062 2017-03-06 16:17 Rev.: 2959

set precision in portable way, real kind=PREC_REAL defined in parameters.f90

159 lines of code changed in 4 files:

cje012 2017-03-06 13:21

Updated to the newest version in trunk.

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sbu062 2017-03-06 13:02 Rev.: 2956

deleted automatic double type as real*8 is already here

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jwe041 2017-03-06 12:47 Rev.: 2955

added code for saving figures to jpg / fig

removed for-loops

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jwe041 2017-03-06 12:46 Rev.: 2954

added code for saving figures to jpg / fig

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sbu062 2017-03-06 12:03 Rev.: 2953

move IF_FFLAGS above ifdef DEBUG

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cje012 2017-03-06 11:34 Rev.: 2952

Changed model default to be used with interpolation for hormone categories in forward.

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cje012 2017-03-06 11:32 Rev.: 2951

Some minor changes to plotting.

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sbu062 2017-03-06 10:31 Rev.: 2950

small changes

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cje012 2017-03-06 09:24 Rev.: 2949

Removed some comments

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sbu062 2017-03-06 08:05 Rev.: 2948

minor fix

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sbu062 2017-03-06 05:31 Rev.: 2947

merged config xfce

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sbu062 2017-03-06 05:28 Rev.: 2946

minor fix, added makefile config for thunar

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sbu062 2017-03-05 19:56 Rev.: 2945

merged latest

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sbu062 2017-03-05 18:32 Rev.: 2944

more added

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sbu062 2017-03-05 16:05 Rev.: 2943

more cleanups, white space

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sbu062 2017-03-05 16:00 Rev.: 2942

added more comments and cleanup

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sbu062 2017-03-05 15:47 Rev.: 2941

added building with the debugging symbols included, to do this set DEBUG to some value, e.g. : make DEBUG=1

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sbu062 2017-03-05 15:27 Rev.: 2940

merged latest details on codeblocks initial config

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sbu062 2017-03-05 15:25 Rev.: 2939

more details on codeblocks initial config

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sbu062 2017-03-05 15:00 Rev.: 2938

merged latest

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sbu062 2017-03-05 14:49 Rev.: 2937

added initial project setup

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sbu062 2017-03-05 14:29 Rev.: 2936

deleted real source file from the project, placed fake file

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sbu062 2017-03-05 14:23 Rev.: 2935

added standard targets and some notes, compatibility with the aha codeblocks project

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sbu062 2017-03-05 13:50 Rev.: 2934

added gfortran docs

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sbu062 2017-03-05 12:21 Rev.: 2933

merged latest changes

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sbu062 2017-03-05 11:39 Rev.: 2932

minor change

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sbu062 2017-03-05 10:24 Rev.: 2931

merged latest doc changes from bransh

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sbu062 2017-03-05 10:21 Rev.: 2930

minor fix

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sbu062 2017-03-05 10:15 Rev.: 2929

minor fix

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sbu062 2017-03-05 10:09

minor fix

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sbu062 2017-03-05 10:04 Rev.: 2926

do delete later to reduce downtime

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sbu062 2017-03-05 09:58 Rev.: 2925

delete before copy to minimise downtime

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sbu062 2017-03-05 09:54 Rev.: 2924

added more on thunar actions

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sbu062 2017-03-05 09:43 Rev.: 2923

added on thunar actions

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sbu062 2017-03-05 09:17 Rev.: 2922

fix doc on cloud workstation

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sbu062 2017-03-04 20:57 Rev.: 2921

merged fron branch

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sbu062 2017-03-04 16:04 Rev.: 2920

minor fix

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sbu062 2017-03-04 15:56 Rev.: 2919

more details on cloud workstation

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sbu062 2017-03-04 14:50 Rev.: 2918

doxygen cleanup, minor fixes

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sbu062 2017-03-04 14:45 Rev.: 2917

small fixes

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sbu062 2017-03-04 14:35

changelog updated

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sbu062 2017-03-04 13:04 Rev.: 2914

updated template from working file

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sbu062 2017-03-04 12:57 Rev.: 2913

portability, use unix/windows platform utils via variables

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sbu062 2017-03-04 12:42 Rev.: 2912

portability, use unix/windows platform utils via variables

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sbu062 2017-03-04 10:54

added more text to web headpage

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sbu062 2017-03-04 10:47 Rev.: 2909

added more text to web headpage

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sbu062 2017-03-04 10:37 Rev.: 2908

web ip address of ahaweb server and debian path

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sbu062 2017-03-04 10:25 Rev.: 2907

now use web ip address of ahaweb server, 158.37.63.57

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sbu062 2017-03-04 10:09 Rev.: 2906

web ip address of ahaweb server

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sbu062 2017-03-03 21:28 Rev.: 2905

merged

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sbu062 2017-03-03 21:27 Rev.: 2904

minor fix

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sbu062 2017-03-03 21:11 Rev.: 2902

deleted MOD_AHA.adoc as it is now fully in doxygen-generated part, not this general manual

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sbu062 2017-03-03 21:04 Rev.: 2900

merged from branch

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sbu062 2017-03-03 21:02 Rev.: 2899

more info on cloud -based IaaS system.

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sbu062 2017-03-03 18:41

minor fix

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sbu062 2017-03-03 18:39 Rev.: 2896

added cloud-based workstation AHA_Workshop to doc

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sbu062 2017-03-03 18:25 Rev.: 2895

added screenshots for IaaS workstation

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cje012 2017-03-03 15:37 Rev.: 2894

Added some comments

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cje012 2017-03-03 15:32 Rev.: 2893

Working Makefile. Thank you so much Sergey!

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cje012 2017-03-03 15:10 Rev.: 2892

Started but far for finished.

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cje012 2017-03-03 14:56 Rev.: 2891

Trying to make a Makefile

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cje012 2017-03-03 12:12 Rev.: 2890

Some more minor changes to comments.

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cje012 2017-03-03 12:05

Minor changes to comments.

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cje012 2017-03-03 12:01 Rev.: 2887

Separated parameters into a seperate file (parameters.f90).

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cje012 2017-03-03 12:00 Rev.: 2886

File with a module containing all the parameters to hormone model (Hormones_v2.f90).

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cje012 2017-03-03 11:16 Rev.: 2885

Added svn tags

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cje012 2017-03-03 11:15 Rev.: 2884

File with parameter files for Hormones_v2.f90

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cje012 2017-03-03 11:14 Rev.: 2883

Put parameters in seperate file.

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cje012 2017-03-03 10:42

Replaced old version with the one from trunk.

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nzlcj 2017-03-03 10:28 Rev.: 2879

Christian debugged. Several changes, Jacqueline has list in her notes.

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nzlcj 2017-03-03 10:27 Rev.: 2878

Christian debugged. Minor changes.

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nzlcj 2017-03-03 10:26 Rev.: 2877

Christian debugged. Changed code for stacked area charts.

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sbu062 2017-03-03 08:45 Rev.: 2876

fix uninitialised vars

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sbu062 2017-03-03 08:45 Rev.: 2875

fix uninitialised var

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sbu062 2017-03-02 18:57 Rev.: 2874

doxygen cleanup: latex eps graphs fixed width 14 cm now

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sbu062 2017-03-02 18:07 Rev.: 2873

updated changelog

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sbu062 2017-03-02 16:06 Rev.: 2872

deleted unneeded codeblocks files, they are autogenerated, only cbp is essential

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sbu062 2017-03-02 11:14

added installation for user-built PGPLOT

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sbu062 2017-03-01 16:05 Rev.: 2869

added template for cb

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sbu062 2017-03-01 13:41 Rev.: 2868

added codeblocks template project files

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sbu062 2017-03-01 12:01 Rev.: 2867

doxygen, minor fix weblink

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sbu062 2017-03-01 11:55 Rev.: 2866

doxygen fix, utf quotes ane signs are not rendered well, changed to ascii

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sbu062 2017-03-01 11:49 Rev.: 2865

added a short intro to the aha model at mainpage

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tla051 2017-03-01 07:33 Rev.: 2864

1 lines of code changed in 1 file:

February 2017 »

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