Directory hormones_v2/stochastic_trunk/

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cje012 2020-03-26 11:20 Rev.: 9511

Deleted folder that was no longer needed

23 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+23 -35)

cje012 2020-03-26 10:59 Rev.: 9507

Removed settings for double precision

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Makefile (+1 -1)

cje012 2019-04-26 15:55

Fixed bug that caused negative survival if starvation limit was turned on.

2 lines of code changed in 2 files:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1), Hormones_v2_forcedE.f90 (+1 -1)

cje012 2019-04-23 13:41 Rev.: 8154

Fixed error in makefile

16 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Makefile (+16 -2)

cje012 2019-04-23 13:07 Rev.: 8150

Removed all -f as they caused problems for windows.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Makefile (+2 -2)

cje012 2019-04-23 12:52 Rev.: 8149

Updated makefile to also be able to compile Hormones_v2_forced.f90, just write make ex.

22 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Makefile (+22 -5)

cje012 2019-04-23 12:51 Rev.: 8148

Added proset to file

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2_forcedE.f90 (+2 -1)

cje012 2019-04-23 12:51 Rev.: 8147

Version of the model for doing experiments and forcing individuals through choosen environments.

675 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2_forcedE.f90 (new 675)

cje012 2019-04-15 13:53 Rev.: 8136

Minor but important fix

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

cje012 2019-04-15 13:39 Rev.: 8134

Fixed error where initial R_cat was saved incorrecly to the ind.array.

5 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+5 -3)

cje012 2019-04-15 08:34 Rev.: 8126

Updated to new parameters.

0 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (-1)

cje012 2019-04-15 07:56 Rev.: 8124

Updated to new parameterset.

9 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+9 -14)

cje012 2019-03-22 08:47 Rev.: 8071

Updated to the version in the binary_IO trunk with some small tweaks so it will work with the hormone model.

215 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: binary_IO.f90 (+215 -106)

cje012 2019-03-18 12:33 Rev.: 8037

Changed OXF_inc to 1._RP+(2._RP/3._RP)

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+1 -1)

cje012 2019-02-08 08:24 Rev.: 7818

Replaced tabs with spaces.

14 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+14 -14)

cje012 2019-02-01 07:59 Rev.: 7744

Added OXFmax_inc = 1.6 to parameterfile.

19 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+19 -15)

cje012 2018-12-12 10:07 Rev.: 7577

Changed the model so that the initiation of the environment is done before the forward part of the model (like in the parasite branch of the model). So that individuals always move predictably in the environment.

29 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+29 -14)

cje012 2018-12-03 11:53 Rev.: 7566

Minor change

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+1 -1)

cje012 2018-12-03 11:42 Rev.: 7565

Added O2max_inc that incrases O2max_standard over the empirical value, and M_O2_coeff so that M_O2 stays unchanged.

5 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+5 -3)

cje012 2018-11-02 08:30 Rev.: 7478

Fixed error in how R_cat is saved to the ind array.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

cje012 2018-11-02 07:47 Rev.: 7475

Commented out lines about starvation_limit as they cause problems.

4 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+4 -4)

cje012 2018-07-10 11:45 Rev.: 7240

Removed old commented line where intake_max was saved to ind array.

0 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (-1)

cje012 2018-07-10 11:39 Rev.: 7239

Removed changes as they broke the model.

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+3 -16)

cje012 2018-07-10 09:52 Rev.: 7238

Rewritten so it can run with only one environment (E_categories=1) if ValueOfE_min==ValueOfe_max. If E_categories=1 and ValueOfE_min/=ValueOfe_min then the code is broken.

16 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+16 -3)

cje012 2018-07-09 09:36 Rev.: 7220

Moved from ./stochastic_trunk to .stochastic_trunk/Tools

0 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting-combine.r (del)

cje012 2018-07-09 09:35 Rev.: 7219

Moved from ./stochastic_trunk to ./stochastic_trunk/Tools

0 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (del)

cje012 2018-07-09 09:32 Rev.: 7218

Updated to the parameters that have yielded the best results until now.

16 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+16 -16)

cje012 2018-06-26 09:23 Rev.: 7205

Minor fix.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+2 -2)

cje012 2018-06-26 08:35 Rev.: 7204

Minor fix.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+2 -2)

cje012 2018-06-15 15:12 Rev.: 7203

Fixed minor bug in code

5 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+5 -5)

cje012 2018-06-11 14:08 Rev.: 7200

Added plot with O2_used given environment with colour for THF.

8 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+8 -1)

cje012 2018-06-11 13:32 Rev.: 7199

Commented out some plots that took a lot of time to plot and added a new plot with M_size_O2 given O2_used with THF as colour

40 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+40 -32)

cje012 2018-05-29 12:15 Rev.: 7177

Minor changes to plots to make them look a bit better.

30 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+30 -26)

cje012 2018-05-24 09:06 Rev.: 7128

Fixed error in code where the change of reserves from the start to the end of the timestep was saved incorrecly to the ind array. Thank you Sigrunn!

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

cje012 2018-04-27 13:58 Rev.: 7038

Minor changes to comments.

23 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: plotting.r (+23 -7)

cje012 2018-04-19 10:00 Rev.: 7037

Fixed error.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+1 -1)

cje012 2018-04-19 09:34 Rev.: 7036

Fixed error in autocorrelatedE. phi was not saved to lastphi in while loop.

3 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+3)

cje012 2018-04-19 08:38 Rev.: 7035

Changed phi = alpha*lastphi + sqrt(1._RP-alpha)*rnorm() into phi = alpha*lastphi + sqrt(1._RP-alpha**2._RP)*rnorm() as the old way of calculating phi did not give a standard normal distribution.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: functions.f90 (+1 -1)

cje012 2018-04-19 08:37 Rev.: 7034

Added new parameter SMR_coeff_weight used for calculations of SMR_coeff.

2 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: parameters.f90 (+2 -1)

cje012 2018-04-19 08:36 Rev.: 7033

Weight used for calculating SMR_coeff is now a parameter names SMR_coeff_weight.

1 lines of code changed in 1 file:

• hormones_v2/stochastic_trunk: Hormones_v2.f90 (+1 -1)

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