Directory hormones_v2/branches_camilla/parasitebranch_v1/Tools/

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Most Recent Commits

cje012 2020-03-30 10:30 Rev.: 9517

Added some code to print differences in last timestep for the fish in figureC

8 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+8 -3)

cje012 2020-03-30 07:09 Rev.: 9516

Minor changes

2 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+2 -2)

cje012 2020-03-26 11:25 Rev.: 9513

Cleaning up my mess

52 lines of code changed in 2 files:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+51 -51), plotting.r (+1 -1)

cje012 2019-11-20 14:17 Rev.: 8898

Minor change

115 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+115 -1)

cje012 2019-10-08 08:41 Rev.: 8732

Minor change

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-10-08 08:39 Rev.: 8731

Fixed bug in figure B and edited x-axis title on FigureF.

5 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+5 -5)

cje012 2019-10-07 13:13 Rev.: 8727

Added unit to Fultons condition factor in Figure A.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-10-02 11:50 Rev.: 8685

Added light grey dashed lines to figure 4 to assist the reader.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1)

cje012 2019-10-02 11:14 Rev.: 8682

Fixed minor bug in figure F

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-10-02 10:59 Rev.: 8681

Changed y-axis lable of figure Fa (survival.plot) and make the y-axis start on 0 like in the other plots that make up this figure.

2 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+2 -2)

cje012 2019-10-02 06:38 Rev.: 8678

Renamed Lifetime Mortality Risk to Accumulated Mortality Risk in figure C to reflect the terms used in the stochastic paper.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-09-30 10:41 Rev.: 8654

Changes to plots as discussed

20 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+20 -2)

cje012 2019-09-16 11:28 Rev.: 8563

Changes to make the plots reflect the figures that were shown at the ESEB conference.

25 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+25 -25)

cje012 2019-05-27 07:47 Rev.: 8335

Minor change

24 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+24 -24)

cje012 2019-05-22 08:16 Rev.: 8307

Added code to get transparent backgrounds on ggplots, which can be useful for making plots to presentations.

8 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_functions.r (+8 -1)

cje012 2019-05-22 08:15 Rev.: 8306

Some small but important changes to figures.

28 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+28 -27)

cje012 2019-05-13 15:38 Rev.: 8281

Changed script so it is easier to change the text size and colours of all figures at once.

26 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+26 -21)

cje012 2019-05-13 11:13 Rev.: 8278

Added list with names for the ind_pv_summary_individual array from the Hormone_v2_PV.f90.

20 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_arrays.r (+20 -3)

cje012 2019-05-13 11:10 Rev.: 8277

Added new function for importing data from ind_pv_summary_individual.bin files.

63 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_functions.r (+63)

cje012 2019-05-13 11:05 Rev.: 8276

Changed figure F and script to take bin files from Hormone_v2_PV.f90.

44 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+44 -160)

cje012 2019-05-10 14:28 Rev.: 8263

Minor change

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-05-02 13:36 Rev.: 8222

Fixed errors in calculation of parasite fitness and transmission rate.

30 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+30 -28)

cje012 2019-04-30 15:02 Rev.: 8214

Added new function for saving to binary files.

20 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_functions.r (+20 -22)

cje012 2019-04-30 15:01 Rev.: 8213

Work in progress

152 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+152 -83)

cje012 2019-04-26 16:56 Rev.: 8176

Work in progress

24 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+24 -25)

cje012 2019-04-26 16:46 Rev.: 8175

Work in progress

110 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+110 -1)

cje012 2019-04-26 16:46 Rev.: 8174

Added a
function for importing experiment data.

23 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_functions.r (+23 -1)

cje012 2019-04-26 08:59 Rev.: 8167

Minor updated to plots.

6 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+6 -5)

cje012 2019-04-25 08:36 Rev.: 8163

Minor change to axis title.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+1 -1)

cje012 2019-04-25 08:28 Rev.: 8162

Minor changes to axis titles.

2 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+2 -2)

cje012 2019-04-23 14:40 Rev.: 8157

Minor change

2 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: plotting.r (+2 -2)

cje012 2019-04-23 12:13 Rev.: 8145

Changed file locations, fixed some errors and changed VE.limits

29 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+29 -33)

cje012 2019-04-15 09:21 Rev.: 8131

Added Figure F which is just showing our theory regarding parasite manipulation.

84 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+84)

cje012 2019-04-10 08:27 Rev.: 8105

- Changed order of plots in Figure A
- Added points to the line for Figure B c) and d) to make them easier to distinguish from the line for virulence level 0.5 when they are printed in greyscale
- Removed reserves from Figure C as it could be difficult understand

16 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+16 -16)

cje012 2019-04-02 14:19 Rev.: 8093

Minor changes

37 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+37 -37)

cje012 2019-03-18 12:45 Rev.: 8042

Many changes to plot. The main difference is that now only 4 lines are plotted to virulence level 0.00, 0.25, 0.50 and 0.75, the lines have predefined colours and no longer uses the colours from the colourblind library. The lines now also have different line types (solid, dotted).

120 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+120 -89)

cje012 2019-03-18 12:41 Rev.: 8041

Minor change

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: plotting.r (+1 -1)

cje012 2019-03-18 12:41 Rev.: 8040

Made new function %not.in%, which has the oposite function of using %in%.

3 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: parasite_R_functions.r (+3)

cje012 2019-03-18 12:38 Rev.: 8039

Minor change.

1 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: individual_plot.r (+1 -1)

cje012 2019-03-14 10:24 Rev.: 8036

FigureB c and d is no longer used boxplot for the representation of the data, but a line for the median, a range for the 25-75% and 0-100% of the populations from the different simulations.

11 lines of code changed in 1 file:

• hormones_v2/branches_camilla/parasitebranch_v1/Tools: camilla_paper2_plots.r (+11 -13)

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