Directory greater_argentine_niche_model/

Directory Created:
2020-01-20 14:11
Directory Deleted:
2021-03-12 13:19
Total Files:
0
Deleted Files:
18
Lines of Code:
0

[root]/greater_argentine_niche_model

Lines of Code

greater_argentine_niche_model/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 89 (100.0%) 3168 (100.0%) 35.5
tla051 67 (75.3%) 1984 (62.6%) 29.6
zed014 22 (24.7%) 1184 (37.4%) 53.8

Most Recent Commits

tla051 2021-03-12 13:19 Rev.: 10742

removed here because archived under https://tegsvn.uib.no/svn/tegsvn/branches/tom_langbehn/archive

0 lines of code changed in 18 files:

  • greater_argentine_niche_model: INPUT_temp_environment.bin (del), f.timestep_conversion.R (del), m_binary_IO.f90 (del), m_bioenergetics.f90 (del), m_foraging.f90 (del), m_global_parameters_vassild.f90 (del), m_helpers.f90 (del), m_keypara2file.f90 (del), m_light.f90 (del), m_set_environment.f90 (del), m_set_preyfield.f90 (del), m_visrange.f90 (del), main_program_vassild.f90 (del), test_2.txt (del), test_bwd_output.R (del), test_fwd_output.R (del), test_prey.R (del), test_temp.R (del)
tla051 2020-05-25 06:46 Rev.: 9534

keypara2file added, smaller modifications, model works now

136 lines of code changed in 6 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+21 -13), m_keypara2file.f90 (new 48), m_light.f90 (+9 -8), m_set_environment.f90 (+19 -9), m_set_preyfield.f90 (+8 -9), main_program_vassild.f90 (+31 -52)
tla051 2020-04-02 09:16 Rev.: 9518

scaled light from global irradiance to PAR range by multiplying by 0.45

32 lines of code changed in 2 files:

  • greater_argentine_niche_model: m_light.f90 (+15 -23), m_set_environment.f90 (+17 -7)
tla051 2020-03-09 14:38 Rev.: 9502

Bug fixed: depth was constraint by bottom depth (m) before converting to z-units

35 lines of code changed in 3 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+3 -2), m_light.f90 (+5 -5), main_program_vassild.f90 (+27 -14)
tla051 2020-03-09 10:21 Rev.: 9501

plotting light instead of encounters

73 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_fwd_output.R (+73 -24)
zed014 2020-03-09 09:47 Rev.: 9500

bug research, r plots

85 lines of code changed in 3 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+9 -9), main_program_vassild.f90 (+5 -2), test_bwd_output.R (+71)
tla051 2020-02-28 12:05 Rev.: 9491

commit causes errors, second try

14 lines of code changed in 2 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+12 -11), m_light.f90 (+2 -2)
tla051 2020-02-28 11:18 Rev.: 9490

fixed variabel names in plot

13 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_fwd_output.R (+13 -14)
tla051 2020-02-28 11:18 Rev.: 9489

removed temperature scaling [TL] - causing a bug

450 lines of code changed in 1 file:

  • greater_argentine_niche_model: main_program_vassild.f90 (+450 -446)
tla051 2020-02-26 09:32 Rev.: 9488

tuned light measurments to observations from Bergen [TL]

3 lines of code changed in 1 file:

  • greater_argentine_niche_model: m_set_environment.f90 (+3 -2)
zed014 2020-02-17 09:42 Rev.: 9473

changed fwd r plot surface light by predation and ingestion rates

15 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_fwd_output.R (+15 -44)
zed014 2020-02-13 10:37 Rev.: 9462

Changed fwd and bwd r files:
melted all the bottom depths

Changed fortran file:
changed predator density and bottom depths

330 lines of code changed in 4 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+3 -3), main_program_vassild.f90 (+2 -4), test_bwd_output.R (+151 -96), test_fwd_output.R (+174 -96)
tla051 2020-02-10 12:28 Rev.: 9443

changed from loop to melt to create dataframes [TL]

171 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_fwd_output.R (+171 -156)
zed014 2020-02-10 09:03 Rev.: 9439

changed the r plots
changed soøe fishes states parameters

2 lines of code changed in 1 file:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+2 -2)
zed014 2020-02-07 11:57 Rev.: 9403

changing some fish state parameters
output fwd: desactivated 2 lines: there are dubles!
Change the forward plots

54 lines of code changed in 4 files:

  • greater_argentine_niche_model: m_bioenergetics.f90 (+1), m_global_parameters_vassild.f90 (+6 -6), main_program_vassild.f90 (+2 -2), test_fwd_output.R (+45 -8)
zed014 2020-02-04 13:31 Rev.: 9378

Fortran file:
-new bottom depth values
-new output comments
-change dens of epipelagic fish: 1.0E-5 -> 5.0E-6
-put the prey_lowtroph_3d output in the bottom depth loop
-change initialization output_fwd(:,:,:,:) = 0 in output_fwd(:,bottom,:,:) = 0
-output a file with the depths, used then in the r file

52 lines of code changed in 4 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+2 -2), main_program_vassild.f90 (+18 -3), test_bwd_output.R (+3 -3), test_fwd_output.R (+29 -26)
tla051 2020-02-03 15:01 Rev.: 9377

fix bug in bottom_depth loop

44 lines of code changed in 2 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+1), main_program_vassild.f90 (+43 -42)
zed014 2020-02-03 13:38 Rev.: 9376

Loop created for diff bottom depths:

In the model,
-loop with bottom depth added in the main program,
-in the loop, z_max replaced by the bottom depth,
-2 variables linked with the loop added to the declarations in the main program,
-array of the bottom depths targeted + integer of the nb of bottom depths targeted added in the global params,
-bottom depth variable added to the bwd and fwd output (declaration and program) in the main program,

in the r bwd / fwd output program,
-loop that create and save a plot for each bottom depth added
-in plot nb 3 of each bottom depth plots, predation risk replaced by preyfield

645 lines of code changed in 4 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+4 -2), main_program_vassild.f90 (+404 -399), test_bwd_output.R (+142 -136), test_fwd_output.R (+95 -91)
tla051 2020-01-30 12:33 Rev.: 9372

first time commit, new code to make some plots of forward and backward model output [TL]

248 lines of code changed in 2 files:

  • greater_argentine_niche_model: test_bwd_output.R (new 136), test_fwd_output.R (new 112)
tla051 2020-01-30 12:32 Rev.: 9371

fixed length argentine, added function to calculate weight by length for argentine, fixed ts in years [TL]

176 lines of code changed in 5 files:

  • greater_argentine_niche_model: m_bioenergetics.f90 (+4 -1), m_global_parameters_vassild.f90 (+61 -54), m_set_environment.f90 (+1 -1), m_set_preyfield.f90 (+30 -20), main_program_vassild.f90 (+80 -63)
tla051 2020-01-27 14:48 Rev.: 9317

restructured timestep and day loop indexing to allow for higher time resolution and selection of single days to run [TL]

90 lines of code changed in 4 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+39 -31), m_set_environment.f90 (+2 -2), m_set_preyfield.f90 (+4 -4), main_program_vassild.f90 (+45 -32)
tla051 2020-01-21 14:32 Rev.: 9297

fixed error in day loop structure (environment is now 365 days irrespective of modelling timeframe) [TL]

9 lines of code changed in 3 files:

  • greater_argentine_niche_model: m_global_parameters_vassild.f90 (+1 -1), m_set_environment.f90 (+1 -1), main_program_vassild.f90 (+7 -4)
tla051 2020-01-21 13:34 Rev.: 9296

uploaded [TL]

0 lines of code changed in 1 file:

  • greater_argentine_niche_model: INPUT_temp_environment.bin (new)
tla051 2020-01-21 13:28

code uploaded [TL]

490 lines of code changed in 13 files:

  • greater_argentine_niche_model: f.timestep_conversion.R (new), m_binary_IO.f90 (new), m_bioenergetics.f90 (new 1), m_foraging.f90 (new), m_global_parameters_vassild.f90 (new 46), m_helpers.f90 (new), m_light.f90 (new 23), m_set_environment.f90 (new 6), m_set_preyfield.f90 (new 20), m_visrange.f90 (new), main_program_vassild.f90 (new 394), test_prey.R (new), test_temp.R (new)
zed014 2020-01-20 14:18 Rev.: 9287

added text [AB]

1 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_2.txt (+1)
tla051 2020-01-20 14:11 Rev.: 9284

this is a test from Tom

0 lines of code changed in 1 file:

  • greater_argentine_niche_model: test_2.txt (new)
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