Directory branches/budaev/STOMACH/scripts/

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sbu062 2022-06-08 10:59 Rev.: 12560

simulation for `midgut_michaelis_k`

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-06-07 10:00 Rev.: 12551

run simulation check `midgut_michaelis_r_max`
do also revert `svn merge -r HEAD:12532 .`

8 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+8 -8)

sbu062 2022-05-31 09:07 Rev.: 12536

batch job: reduced batch for check effect of `appetite_threshold_stomach`
This was for shorter run time than r12532

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3 -3)

sbu062 2022-05-30 18:47 Rev.: 12532

batch job: check effect of `appetite_threshold_stomach`

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-30 11:14 Rev.: 12528

parameters file name is now `cfg` extension: **parameters.cfg**
This makes it much easier to work with the file, as syntax highlighting is almost everywhere automatic

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: quick-plot.R (+1 -1)

sbu062 2022-05-20 10:08 Rev.: 12513

run batch job with extended temperatures, including experiment IFN02

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-19 08:11 Rev.: 12502

use gzip to compress run data, to much space for data taken

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2)

sbu062 2022-05-18 19:05 Rev.: 12499

batch run for `ingestion_delay`

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-18 19:04 Rev.: 12498

add default `appetite_factor_a`as in additional model run `batch-def-5000000.fishmet`

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2 -2)

sbu062 2022-05-18 19:00 Rev.: 12497

revert temperature

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-18 18:51 Rev.: 12496

simulation batch for `ingestion_delay`

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-11 09:37 Rev.: 12461

report script revision in xmpp notification

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2 -2)

sbu062 2022-05-11 09:33 Rev.: 12460

report end batch by notification via xmpp

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2)

sbu062 2022-05-11 09:23 Rev.: 12459

better reporting

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -2)

sbu062 2022-05-11 09:00 Rev.: 12458

added counter for parameter sets and loop runs

4 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+4 -1)

sbu062 2022-05-11 08:03 Rev.: 12456

collapse white space

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -5)

sbu062 2022-05-11 07:53 Rev.: 12454

better log name

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+1 -1)

sbu062 2022-05-11 07:52 Rev.: 12453

add log file on execution for control

13 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+13)

sbu062 2022-05-11 07:23 Rev.: 12452

pdf is smaller

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+1 -1)

sbu062 2022-05-11 07:21 Rev.: 12451

need configurable plot format and file extension

7 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+7 -4)

sbu062 2022-05-10 17:14 Rev.: 12450

fix appetite parameter set added to file names to avoid confusing numbered names

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2 -1)

sbu062 2022-05-10 16:34 Rev.: 12448

comment only

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3)

sbu062 2022-05-10 16:32 Rev.: 12447

add appetite function parameter sets to loop

48 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+48 -31)

sbu062 2022-05-10 12:16 Rev.: 12440

add generator script revision to all batch outputs

4 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+4 -3)

sbu062 2022-05-10 12:03 Rev.: 12439

added helper comment for copy-paste on fishmet server

4 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+4)

sbu062 2022-05-10 11:54 Rev.: 12438

typo fix dot

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+1 -1)

sbu062 2022-05-10 11:53 Rev.: 12437

need script revision number in csv output file

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+1 -1)

sbu062 2022-03-31 12:19 Rev.: 12319

fix save output arrays in batch script, more help on rate output arrays

7 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+7 -6)

sbu062 2022-03-31 10:27 Rev.: 12318

tools go to scripts "directory"

118 lines of code changed in 2 files:

• branches/budaev/STOMACH/scripts: quick-plot.R (new 60), quick-plot.gnuplot (new 58)

sbu062 2022-03-30 18:29 Rev.: 12316

reformat only

1 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+1)

sbu062 2022-03-30 18:13 Rev.: 12314

save also output stats for each simulation run

10 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+10 -7)

sbu062 2022-03-30 11:20 Rev.: 12310

comments only

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3 -1)

sbu062 2022-03-30 10:41 Rev.: 12308

add more plot reusing file suffix

6 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+6 -3)

sbu062 2022-03-30 10:27 Rev.: 12307

delete extraneous spaces
isee PRP8 https://peps.python.org/pep-0008/#whitespace-in-expressions-and-statements

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2 -2)

sbu062 2022-03-30 10:23 Rev.: 12306

added full reference for (stomach_volume)

8 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+8 -4)

sbu062 2022-03-30 09:44 Rev.: 12305

fix params to agree with dictionary names

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3 -2)

sbu062 2022-03-30 09:29 Rev.: 12304

more useful explicit parameters in graphic file name, not loop numbers

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3 -1)

sbu062 2022-03-29 08:30 Rev.: 12300

fix `output stats` must invoke all counters

3 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+3 -2)

sbu062 2022-03-29 08:13 Rev.: 12299

add svn revision

5 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+5 -3)

sbu062 2022-03-29 08:03 Rev.: 12298

added tags

2 lines of code changed in 1 file:

• branches/budaev/STOMACH/scripts: sensitivity_generate.py (+2)

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