Directory branches/budaev/STOMACH_globalarrays/

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sbu062 2021-03-16 08:50 Rev.: 10783

temporary work branch for refactoring deleted

0 lines of code changed in 3 files:

• branches/budaev/STOMACH_globalarrays: m_common.f90 (del), m_fish.f90 (del), m_simulate.f90 (del)

sbu062 2021-03-16 08:39 Rev.: 10781

debug print code deleted, reverted to r10766 not touching added output arrays definitions

0 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_simulate.f90 (-46)

sbu062 2021-03-16 08:14 Rev.: 10780

move definition of global output arrays back to `SIMULATE` module, no reference to globals is needed in `THE_FISH`. This reverts r10677

41 lines of code changed in 2 files:

• branches/budaev/STOMACH_globalarrays: m_common.f90 (-42), m_simulate.f90 (+41)

sbu062 2021-03-16 07:52 Rev.: 10779

only comment on cumulative versus instantaneous absorption use to calculate cumulative absorption

4 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+4)

sbu062 2021-03-16 07:41 Rev.: 10778

debug: only debug print code

30 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_simulate.f90 (+30 -2)

sbu062 2021-03-16 07:40 Rev.: 10777

iadded current instantaneous absorption to history stack array, so it is now possible to correctly calculate absorption rate without requiring global output arrays in `THE_FISH` module; call (midgut_fish_history_update) moved below (check_disappear) call, fixes wrong cumulative absorption history update before checking for disappearing item

41 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+41 -38)

sbu062 2021-03-15 17:19 Rev.: 10776

(fish_midgut_update_from_stomach) is declared *impure* but could be converted to `pure` if `write` statements are deleted

1 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+1 -1)

sbu062 2021-03-15 17:15 Rev.: 10775

block `UPDATE_HISTORY_ABSORP` isolated to subroutine (midgut_fish_history_update)

38 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+38 -34)

sbu062 2021-03-15 13:42 Rev.: 10772

block UPDATE_HISTORY_ABSORP updates history stack array for cimulative absorption

37 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+37 -1)

sbu062 2021-03-15 13:41 Rev.: 10771

debug: debug code only

0 lines of code changed in 2 files:

• branches/budaev/STOMACH_globalarrays: m_simulate.f90 (new)

sbu062 2021-03-15 12:02 Rev.: 10770

added history array subcomponent to FISH_SKEL, this will include history arrays, done and init cumulative absorption so far

24 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_fish.f90 (+24 -43)

sbu062 2021-03-15 12:00 Rev.: 10769

got back output arrays to COMMONDATA because it is difficult to implement FISH class component transfer to IF_CMD and IF_GUI without `this` argument, need smaller history arrays subcomponent in FISH class; history array management code copied from AHA: (add_to_history)

132 lines of code changed in 1 file:

• branches/budaev/STOMACH_globalarrays: m_common.f90 (+132)

sbu062 2021-03-15 08:38 Rev.: 10767

definitions of output arrays moved to THE_FISH module to integrate with FISH class

0 lines of code changed in 4 files:

• branches/budaev/STOMACH_globalarrays: m_common.f90 (new), m_fish.f90 (changed)