Directory branches/budaev/RSTAT/FISHMET/

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sbu062 2022-06-09 14:05

no need obsolete file

0 lines of code changed in 2 files:

• branches/budaev/RSTAT/FISHMET: parameters-r12461.dat (del), sensitivity_generate-r12461.py (del)

sbu062 2022-06-08 10:12 Rev.: 12559

reset `midgut_michaelis_r_max`

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12551.md (+5 -5)

sbu062 2022-06-08 10:06 Rev.: 12558

fix input file name

1 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12551.md (+1 -1)

sbu062 2022-06-08 10:00 Rev.: 12557

copied worksheet for data r12551

201 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12551.md (new 201)

sbu062 2022-06-08 09:49 Rev.: 12556

data from simulation r12551 `midgut_michaelis_r_max`

657 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: batch-data_r12551.csv (new 657)

sbu062 2022-05-31 10:57 Rev.: 12538

from batch job r12536

21 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: batch-data_r12536.csv (new 21)

sbu062 2022-05-23 14:54 Rev.: 12527

fix: batch varied temperature

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12513.md (+5 -5)

sbu062 2022-05-23 14:37 Rev.: 12526

copied and adapted analysis worksheet for simulation batch r12513

201 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12513.md (new 201)

sbu062 2022-05-23 14:33 Rev.: 12525

data from simulation batch r12513

1317 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: batch-data_r12513.csv (new 1317)

sbu062 2022-05-20 14:38 Rev.: 12519

complete fix

1 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+1 -1)

sbu062 2022-05-20 14:37 Rev.: 12518

typo fixed

1 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+1 -1)

sbu062 2022-05-20 14:35 Rev.: 12517

copied call to functions and sgr

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+5 -4)

sbu062 2022-05-20 10:58 Rev.: 12516

add some analysis of SGR

16 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12499.md (+16)

sbu062 2022-05-20 10:49 Rev.: 12515

calculate specific growth rate

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12499.md (+5 -1)

sbu062 2022-05-20 10:41 Rev.: 12514

add R functions, start with specific growth rate Houde & Schekter (1981)

10 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: r-funcs.R (new 10)

sbu062 2022-05-20 10:00 Rev.: 12512

analysis of batch run r12499 with `ingestion_delay`

181 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12499.md (new 181)

sbu062 2022-05-20 09:44 Rev.: 12511

batch simulation with generator script r12499

1097 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: batch-data_r12499.csv (new 1097)

sbu062 2022-05-16 10:52 Rev.: 12494

add fit plot

14 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+14)

sbu062 2022-05-13 12:13 Rev.: 12493

need to include data simulation file revision number

7 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+7 -7)

sbu062 2022-05-13 12:06 Rev.: 12492

fix library loading

3 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+3 -1)

sbu062 2022-05-13 11:54 Rev.: 12491

use partial effect size eta-squared

2 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+2 -1)

sbu062 2022-05-13 11:42 Rev.: 12490

note on data append r12487

1 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+1)

sbu062 2022-05-13 11:34 Rev.: 12489

calculate effect sizes

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+5 -4)

sbu062 2022-05-13 11:12 Rev.: 12488

plot test chunk line

11 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+11)

sbu062 2022-05-13 10:58 Rev.: 12487

appended simulation batch for `appetite_factor_a=5000000` (default)
Diff file for `scripts/sensitivity_generate.py`
{{{
Index: scripts/sensitivity_generate.py
===================================================================
--- scripts/sensitivity_generate.py (revision 12468)
+++ scripts/sensitivity_generate.py (working copy)
@@ -87,8 +87,8 @@
# appetite parameters | parameter array pairs
#----------------------+------------------------------------
appetite = {
- "appetite_factor_a": [ 100, 1000, 10000, 500000 ],
- "appetite_factor_r": [ 10, 10, 10, 20 ]
+ "appetite_factor_a": [ 5000000 ],
+ "appetite_factor_r": [ 20 ]
}

# ------------------------------------------------------------------------------
}}}

132 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: batch-data_r12461.csv (+132)

sbu062 2022-05-13 10:45 Rev.: 12486

snall changes

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+5 -1)

sbu062 2022-05-13 10:41 Rev.: 12485

subtitles for easier navigation

6 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+6)

sbu062 2022-05-13 10:37 Rev.: 12484

add data import to worksheet

2 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+2 -6)

sbu062 2022-05-12 14:47 Rev.: 12483

comments with parameter arrays for dynamic plots of appetite effect

22 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+22)

sbu062 2022-05-12 14:30 Rev.: 12482

reordered slice curves for appetite factor

6 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+6 -4)

sbu062 2022-05-12 14:25 Rev.: 12481

add slices by food input rate and appetite patytern

27 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+27 -5)

sbu062 2022-05-12 14:09 Rev.: 12480

define recoded appetite_pattern by reordering

21 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+21 -5)

sbu062 2022-05-12 13:12 Rev.: 12479

accessory plot added

6 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+6)

sbu062 2022-05-12 12:48 Rev.: 12478

simple aov add

22 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+22)

sbu062 2022-05-12 12:26 Rev.: 12477

add python invocation for body mass levels

18 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+18)

sbu062 2022-05-12 12:18 Rev.: 12476

add default appetite curve, batch second run with
{{{
#----------------------+------------------------------------
appetite = {
"appetite_factor_a": [ 5000000 ],
"appetite_factor_r": [ 20 ]
}
}}}
with commands{{{
scripts/sensitivity_generate.py > batch-def-5000000.fishmet
./fishmet.exe --batch < batch-def-5000000.fishmet ; xsend.py sbu062@tegsvn.uib.no "Batch job finished on FISHMET"
}}}

4 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+4 -1)

sbu062 2022-05-12 11:56 Rev.: 12475

auto whitespace from rstudio

0 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (-5)

sbu062 2022-05-12 11:54 Rev.: 12474

add parameter plots and basic scatters

39 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+39)

sbu062 2022-05-12 10:50 Rev.: 12473

reformat md

5 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+5 -7)

sbu062 2022-05-12 10:48 Rev.: 12472

more effects

8 lines of code changed in 1 file:

• branches/budaev/RSTAT/FISHMET: sa_batch_r12461.md (+8)

(3 more)